BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0178.p (143 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia ... 150 6e-35 ref|ZP_04881164.1| DNA-binding response regulator [Burkholderia ... 150 8e-35 ref|YP_105470.1| DNA-binding response regulator [Burkholderia ma... 149 9e-35 ref|YP_111501.1| two-component response regulator protein [Burkh... 149 1e-34 ref|YP_001585768.1| two component transcriptional regulator [Bur... 147 5e-34 >ref|ZP_02486145.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] ref|ZP_02510364.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 245 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 75/122 (61%), Positives = 94/122 (77%), Gaps = 2/122 (1%) Query: 23 RRAK-CLXPVTRGRHPRAYRFAGWELNLNTRRLTAPDQRQVSLTNAEFSLLVAFLGAPGR 81 RRA+ PV RGRHPRAYRF GW LN+NTRRL+ D +++ LT EF+LL FLG+P R Sbjct: 123 RRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLSTRDAQEIPLTVGEFNLLAFFLGSPSR 182 Query: 82 IISREHLLESTRAFDEVYDRAIDVQILRLRRKLEADPKHPTLLRTERGAGYLLDT-EIEV 140 +++R LLE TRAFD+V+DRA+DVQI RLR+K+E DPKHP L+RTERG GY D E+E Sbjct: 183 VVTRAQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVET 242 Query: 141 IW 142 +W Sbjct: 243 LW 244 >ref|ZP_04881164.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] ref|ZP_04910545.1| DNA-binding response regulator [Burkholderia mallei FMH] ref|ZP_04915507.1| DNA-binding response regulator [Burkholderia mallei JHU] gb|EDK52151.1| DNA-binding response regulator [Burkholderia mallei FMH] gb|EDK57453.1| DNA-binding response regulator [Burkholderia mallei JHU] gb|EDP85518.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] Length = 236 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 2/122 (1%) Query: 23 RRAK-CLXPVTRGRHPRAYRFAGWELNLNTRRLTAPDQRQVSLTNAEFSLLVAFLGAPGR 81 RRA+ PV RGRHPRAYRF GW LN+NTRRL D +++ LT EF+LL FLG+P R Sbjct: 114 RRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSR 173 Query: 82 IISREHLLESTRAFDEVYDRAIDVQILRLRRKLEADPKHPTLLRTERGAGYLLDT-EIEV 140 +++R LLE TRAFD+V+DRA+DVQI RLR+K+E DPKHP L+RTERG GY D E+E Sbjct: 174 VVTRAQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVET 233 Query: 141 IW 142 +W Sbjct: 234 LW 235 >ref|YP_105470.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] ref|YP_990210.1| DNA-binding response regulator [Burkholderia mallei SAVP1] ref|YP_001024528.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] ref|YP_001078852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] ref|ZP_02269533.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] ref|ZP_02407395.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] ref|ZP_02460149.1| DNA-binding response regulator [Burkholderia pseudomallei 9] ref|ZP_02494285.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] ref|ZP_02502520.1| DNA-binding response regulator [Burkholderia pseudomallei 112] ref|ZP_03456614.1| DNA-binding response regulator [Burkholderia pseudomallei 576] ref|ZP_03791662.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] ref|ZP_04521528.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] ref|ZP_04610537.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] ref|ZP_04971835.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gb|AAU46907.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gb|ABM49028.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gb|ABM99704.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10229] gb|ABO03294.1| DNA-binding response regulator VirG [Burkholderia mallei NCTC 10247] gb|EDK82710.1| DNA-binding response regulator [Burkholderia mallei 2002721280] tpg|DAA06010.1| TPA_exp: VirG [Burkholderia mallei] gb|EEC31751.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gb|EEH27970.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gb|EEP50442.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gb|EEP84192.1| DNA-binding response regulator VirG [Burkholderia mallei GB8 horse 4] gb|EES42950.1| DNA-binding response regulator VirG [Burkholderia mallei PRL-20] Length = 245 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 2/122 (1%) Query: 23 RRAK-CLXPVTRGRHPRAYRFAGWELNLNTRRLTAPDQRQVSLTNAEFSLLVAFLGAPGR 81 RRA+ PV RGRHPRAYRF GW LN+NTRRL D +++ LT EF+LL FLG+P R Sbjct: 123 RRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSR 182 Query: 82 IISREHLLESTRAFDEVYDRAIDVQILRLRRKLEADPKHPTLLRTERGAGYLLDT-EIEV 140 +++R LLE TRAFD+V+DRA+DVQI RLR+K+E DPKHP L+RTERG GY D E+E Sbjct: 183 VVTRAQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVET 242 Query: 141 IW 142 +W Sbjct: 243 LW 244 >ref|YP_111501.1| two-component response regulator protein [Burkholderia pseudomallei K96243] ref|YP_335690.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] ref|YP_001063115.1| DNA-binding response regulator [Burkholderia pseudomallei 668] ref|YP_001076056.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] ref|ZP_01768890.1| DNA-binding response regulator [Burkholderia pseudomallei 305] ref|ZP_02415910.1| DNA-binding response regulator [Burkholderia pseudomallei 14] ref|ZP_02451984.1| DNA-binding response regulator [Burkholderia pseudomallei 91] ref|ZP_02475642.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] ref|ZP_04812497.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] ref|ZP_04893330.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04900635.1| DNA-binding response regulator [Burkholderia pseudomallei S13] ref|ZP_04955021.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] ref|ZP_04968944.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] emb|CAH38967.1| putative two-component response regulator protein [Burkholderia pseudomallei K96243] gb|ABA51757.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gb|ABN86844.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gb|ABN93658.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gb|EBA46801.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gb|EDO87962.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gb|EDO90168.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gb|EDS83647.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gb|EES23122.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gb|EET04543.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 245 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 2/122 (1%) Query: 23 RRAK-CLXPVTRGRHPRAYRFAGWELNLNTRRLTAPDQRQVSLTNAEFSLLVAFLGAPGR 81 RRA+ PV RGRHPRAYRF GW LN+NTRRL D +++ LT EF+LL FLG+P R Sbjct: 123 RRAEPSTTPVRRGRHPRAYRFDGWTLNMNTRRLLTRDAQEIPLTVGEFNLLAFFLGSPSR 182 Query: 82 IISREHLLESTRAFDEVYDRAIDVQILRLRRKLEADPKHPTLLRTERGAGYLLDT-EIEV 140 +++R LLE TRAFD+V+DRA+DVQI RLR+K+E DPKHP L+RTERG GY D E+E Sbjct: 183 VVTRAQLLECTRAFDDVFDRAVDVQIWRLRKKIEKDPKHPELIRTERGVGYYFDAKEVET 242 Query: 141 IW 142 +W Sbjct: 243 LW 244 >ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001941520.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] gb|ABX19476.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] dbj|BAG47530.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] Length = 253 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 74/117 (63%), Positives = 88/117 (75%), Gaps = 1/117 (0%) Query: 23 RRAKCLXPVT-RGRHPRAYRFAGWELNLNTRRLTAPDQRQVSLTNAEFSLLVAFLGAPGR 81 RRA P T R + RAYRF+GWELN+ TRRLT P V LTN EF LL AFL APGR Sbjct: 122 RRAGATAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGR 181 Query: 82 IISREHLLESTRAFDEVYDRAIDVQILRLRRKLEADPKHPTLLRTERGAGYLLDTEI 138 ++SR+ LLES+R +D+VYDR+IDVQILRLRRK+E DP HP +RT RGAGY+LD + Sbjct: 182 VLSRDQLLESSRLYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPV 238