BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0175.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773748.1| outer membrane drug efflux protein [Herbaspi... 743 0.0 ref|YP_001633128.1| putative outer membrane efflux protein [Bord... 589 e-166 ref|YP_003981899.1| multidrug efflux system lipoprotein 3 [Achro... 534 e-149 gb|EFV85473.1| multidrug efflux system outer membrane protein [A... 528 e-147 ref|YP_784862.1| multidrug efflux system outer membrane protein ... 526 e-147 >ref|YP_003773748.1| outer membrane drug efflux protein [Herbaspirillum seropedicae SmR1] gb|ADJ61840.1| outer membrane drug efflux protein [Herbaspirillum seropedicae SmR1] Length = 504 Score = 743 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 461/504 (91%), Positives = 480/504 (95%) Query: 7 MMTQSLSMSRLLRPVRISSALLAALLVLAGCSVAPTYERPAVDTPATFKEAAPAPQTGEN 66 MMTQ LSMSRLLRPVRI SALLAALLVLAGCSVAPTYERP+VDTPA FKEAAPA QTGEN Sbjct: 1 MMTQPLSMSRLLRPVRIGSALLAALLVLAGCSVAPTYERPSVDTPAAFKEAAPATQTGEN 60 Query: 67 GSQWKTAQPAEDIARGEWWKIFGDDGLNALEVQALEANQNLKAAAARLSQSRALRQDARS 126 GSQWKTAQPAEDIARGEWWKIFGD+ LNALE A +ANQ+LKAAAARL Q+RAL +DAR+ Sbjct: 61 GSQWKTAQPAEDIARGEWWKIFGDEKLNALEDTAQQANQDLKAAAARLGQARALTRDARA 120 Query: 127 GLFPQVNAGFGATRQRPSPASQGLAPDANTTPNTLWRAQLGVSYEADLFGRVASTVDAAT 186 G FPQV+AG GATRQRPSPASQGL DA+T PNTL+RAQ+ VSYE DLFGRVASTVDAAT Sbjct: 121 GYFPQVDAGVGATRQRPSPASQGLPADADTRPNTLYRAQVNVSYEVDLFGRVASTVDAAT 180 Query: 187 ADAQRSEALFHSVLLALQADVAQQYFQVRELDAAAELYRGTVELRQESLRLVQRRFDEGD 246 ADAQRSEALFHSVLLALQADVAQQYF VRELDAAA LYRGTV+LRQESLRLVQRRFDEGD Sbjct: 181 ADAQRSEALFHSVLLALQADVAQQYFLVRELDAAAALYRGTVDLRQESLRLVQRRFDEGD 240 Query: 247 ISEVDVARARSELASAQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLTRLSVSVP 306 ISEVDVARAR+ELASAQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLTRL+V+VP Sbjct: 241 ISEVDVARARAELASAQSEALGIARQRATAEHALAILLGRTPAEFSLPPQPLTRLAVTVP 300 Query: 307 AGLPSTLLERRPDIAAAERAMAAANARVGVAKSAFFPALNLTGGLGYESAQLGDLFNWSS 366 GLPS LLERRPDIAAAERAMAAANARVGVAKSAFFP+LNLTGGLGYESAQLGDLFNWSS Sbjct: 301 PGLPSALLERRPDIAAAERAMAAANARVGVAKSAFFPSLNLTGGLGYESAQLGDLFNWSS 360 Query: 367 RTFLLGPLVGTALSMPLFDGGRRQAGVDRARASYEEQVATYRGTVLNAFREVEDNLANLR 426 RTFLLGPLVGTALSMPLFDGGRRQAGVDRARASYEEQVA+YRGTVLNAFREVEDNLANLR Sbjct: 361 RTFLLGPLVGTALSMPLFDGGRRQAGVDRARASYEEQVASYRGTVLNAFREVEDNLANLR 420 Query: 427 ILDDQNRAQDEAVAASSRAAKLSHTQYREGAVSYFSVIDADRTVLQQQRASVTLDGERAR 486 ILD QNRAQDEAVAAS+RAAKLSHTQYREGAVSYFSVIDADRTVLQQQRASVTLDGERAR Sbjct: 421 ILDQQNRAQDEAVAASARAAKLSHTQYREGAVSYFSVIDADRTVLQQQRASVTLDGERAR 480 Query: 487 STVNLIRALGGGWGGPATQLSSSR 510 STVNLIRALGGGWG PA QLSS+R Sbjct: 481 STVNLIRALGGGWGVPAEQLSSAR 504 >ref|YP_001633128.1| putative outer membrane efflux protein [Bordetella petrii DSM 12804] emb|CAP44861.1| putative outer membrane efflux protein [Bordetella petrii] Length = 492 Score = 589 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 348/464 (75%), Positives = 397/464 (85%), Gaps = 4/464 (0%) Query: 39 VAPTYERPAVDTPATFKEAAPAPQTGENGSQWKTAQPAEDIARGEWWKIFGDDGLNALEV 98 V P Y+RP VDTPA +KEA PA + G W+TAQPAE+ RGEWWK+FGDD LNALE Sbjct: 25 VGPEYQRPEVDTPAAYKEALPAHEAG----SWQTAQPAEEALRGEWWKLFGDDTLNALET 80 Query: 99 QALEANQNLKAAAARLSQSRALRQDARSGLFPQVNAGFGATRQRPSPASQGLAPDANTTP 158 QA +AN +L+AAAARL Q+RAL +ARS FP V+AGFG TRQRPSPASQGL+ + +T P Sbjct: 81 QAQQANHSLQAAAARLKQARALLGNARSEQFPTVDAGFGPTRQRPSPASQGLSANDSTDP 140 Query: 159 NTLWRAQLGVSYEADLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFQVRELD 218 +TLWRAQ+GVSYE DLFGRVASTVDAATAD Q+SEAL+ SVLLALQADVAQ YFQVRELD Sbjct: 141 STLWRAQVGVSYEVDLFGRVASTVDAATADVQQSEALYRSVLLALQADVAQAYFQVRELD 200 Query: 219 AAAELYRGTVELRQESLRLVQRRFDEGDISEVDVARARSELASAQSEALGIARQRATAEH 278 A +LYR TVELR E+L+L+QRR+D GDISE+D+ARARSEL SA+SEALG R+RA AEH Sbjct: 201 AGLQLYRQTVELRAETLQLIQRRYDAGDISELDLARARSELESARSEALGFERRRANAEH 260 Query: 279 ALAILLGRTPAEFSLPPQPLTRLSVSVPAGLPSTLLERRPDIAAAERAMAAANARVGVAK 338 ALA+LLG+ P+EFSLP QPL+R++V+VPAGLPSTLLERRPDIAAAERAMAAANARVGVAK Sbjct: 261 ALAVLLGKAPSEFSLPAQPLSRIAVNVPAGLPSTLLERRPDIAAAERAMAAANARVGVAK 320 Query: 339 SAFFPALNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPLFDGGRRQAGVDRARA 398 SAFFP+LN+TG G+ESA+LGDLF WSSRTFLLGPLVG ALS+P+FDGGRRQAG+DRARA Sbjct: 321 SAFFPSLNITGAAGFESAELGDLFEWSSRTFLLGPLVGAALSLPIFDGGRRQAGLDRARA 380 Query: 399 SYEEQVATYRGTVLNAFREVEDNLANLRILDDQNRAQDEAVAASSRAAKLSHTQYREGAV 458 YEE VA YR TVL AFREVEDNLANLRIL Q AQD A+ AS RAA++SHTQYREG++ Sbjct: 381 VYEEDVANYRQTVLTAFREVEDNLANLRILSSQTEAQDAALQASQRAARISHTQYREGSI 440 Query: 459 SYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGWGGP 502 SY VI+ADRTVL QQR SV LDGERARS VNL+RALGGGW P Sbjct: 441 SYLDVIEADRTVLAQQRVSVQLDGERARSAVNLVRALGGGWDTP 484 >ref|YP_003981899.1| multidrug efflux system lipoprotein 3 [Achromobacter xylosoxidans A8] gb|ADP19184.1| multidrug efflux system lipoprotein 3 [Achromobacter xylosoxidans A8] Length = 492 Score = 534 bits (1376), Expect = e-149, Method: Composition-based stats. Identities = 332/468 (70%), Positives = 396/468 (84%), Gaps = 5/468 (1%) Query: 36 GCSVAPTYERPAVDTPATFKEAA-PAPQTGENGSQWKTAQPAEDIARGEWWKIFGDDGLN 94 GC+V PTYERP+ PA FKEAA PA + G WKTA+P+ED RG WWK+FGD+GLN Sbjct: 20 GCAVGPTYERPSAAVPAAFKEAALPASEAG----TWKTAEPSEDALRGAWWKVFGDEGLN 75 Query: 95 ALEVQALEANQNLKAAAARLSQSRALRQDARSGLFPQVNAGFGATRQRPSPASQGLAPDA 154 L+ +A +ANQNL+AAAARL+QSRAL+++AR+G FP ++A FG RQRPS SQGL Sbjct: 76 QLQEEAQQANQNLQAAAARLTQSRALQREARAGFFPNLDAAFGPNRQRPSAVSQGLPDGT 135 Query: 155 NTTPNTLWRAQLGVSYEADLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFQV 214 +T+P T WRAQ VSYEADLFGRVAST DAA+ADAQ+SEAL+ SVLLALQADVA YF V Sbjct: 136 STSPVTTWRAQGAVSYEADLFGRVASTYDAASADAQQSEALYRSVLLALQADVATTYFLV 195 Query: 215 RELDAAAELYRGTVELRQESLRLVQRRFDEGDISEVDVARARSELASAQSEALGIARQRA 274 RE DA ++LYR TV+LR ++L+L+QRR+D GDISE+D+ARA++ELASAQSEALGI R+RA Sbjct: 196 REQDAESQLYRQTVKLRTDTLQLIQRRYDAGDISELDLARAKAELASAQSEALGIDRRRA 255 Query: 275 TAEHALAILLGRTPAEFSLPPQPLTRLSVSVPAGLPSTLLERRPDIAAAERAMAAANARV 334 +EHALA+LLGR PA+F++PPQP+ ++++S+PAGLPSTLLERRPDIAAAERAMAAANARV Sbjct: 256 ASEHALAVLLGRAPADFAMPPQPIQKVALSIPAGLPSTLLERRPDIAAAERAMAAANARV 315 Query: 335 GVAKSAFFPALNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPLFDGGRRQAGVD 394 G AKSAFFP L++TG GYES+ LG+LF WSSRTFLLGPLVG ALSMP+FDGGRRQAG+D Sbjct: 316 GAAKSAFFPRLDITGAFGYESSDLGNLFQWSSRTFLLGPLVGAALSMPIFDGGRRQAGLD 375 Query: 395 RARASYEEQVATYRGTVLNAFREVEDNLANLRILDDQNRAQDEAVAASSRAAKLSHTQYR 454 RARA YEE VA YR TVLNAFREVEDNLANLRIL DQ +AQD AV A++RAAKLSHTQYR Sbjct: 376 RARAVYEEDVAVYRQTVLNAFREVEDNLANLRILADQTKAQDAAVDAAARAAKLSHTQYR 435 Query: 455 EGAVSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGWGGP 502 EG++S+ VI+ADR+VL QQR SV L+GE+ARS V LIRA+GGGW P Sbjct: 436 EGSISFLDVIEADRSVLLQQRVSVQLNGEQARSAVGLIRAIGGGWENP 483 >gb|EFV85473.1| multidrug efflux system outer membrane protein [Achromobacter xylosoxidans C54] Length = 495 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 337/468 (72%), Positives = 396/468 (84%), Gaps = 5/468 (1%) Query: 36 GCSVAPTYERPAVDTPATFKEAA-PAPQTGENGSQWKTAQPAEDIARGEWWKIFGDDGLN 94 GC+V PTYERPA TPA +KEAA PA + G WK AQP+E+ RGEWWK+FGD+GLN Sbjct: 21 GCAVGPTYERPAAATPAAYKEAALPAAEAG----TWKPAQPSEEALRGEWWKVFGDEGLN 76 Query: 95 ALEVQALEANQNLKAAAARLSQSRALRQDARSGLFPQVNAGFGATRQRPSPASQGLAPDA 154 L+ +A +ANQNL+AAAARL+Q+RAL+++AR+G FP ++A FG RQRPS SQGL Sbjct: 77 QLQEEAHKANQNLQAAAARLTQARALQREARAGFFPSLDAAFGPNRQRPSAVSQGLPDGT 136 Query: 155 NTTPNTLWRAQLGVSYEADLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFQV 214 +T P T WRAQ VSYEADLFGRVAST DAATADAQ+SEAL+ SVLLALQADVA YF V Sbjct: 137 STRPVTTWRAQGTVSYEADLFGRVASTADAATADAQQSEALYRSVLLALQADVATTYFLV 196 Query: 215 RELDAAAELYRGTVELRQESLRLVQRRFDEGDISEVDVARARSELASAQSEALGIARQRA 274 RE DA A LYR TV+LR E+L+L+QRR+D GDISE+D+ARA++ELASAQSEALGI R+RA Sbjct: 197 REQDAEAALYRQTVQLRTETLQLIQRRYDAGDISELDLARAKAELASAQSEALGIDRRRA 256 Query: 275 TAEHALAILLGRTPAEFSLPPQPLTRLSVSVPAGLPSTLLERRPDIAAAERAMAAANARV 334 EHALA+LLGR P+EF++PP+P+ ++++S+PAGLPSTLLERRPDIAAAERAMAAANARV Sbjct: 257 AGEHALAVLLGRAPSEFAMPPKPIEKVALSIPAGLPSTLLERRPDIAAAERAMAAANARV 316 Query: 335 GVAKSAFFPALNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPLFDGGRRQAGVD 394 G AKSAFFP L++TG GYES++LG+LF WSSRTFLLGPLVG ALSMP+FDGGRRQAG+D Sbjct: 317 GAAKSAFFPRLDITGAFGYESSELGNLFQWSSRTFLLGPLVGAALSMPIFDGGRRQAGLD 376 Query: 395 RARASYEEQVATYRGTVLNAFREVEDNLANLRILDDQNRAQDEAVAASSRAAKLSHTQYR 454 RARA YEE VA YR TVLNAFREVEDNLANLRIL DQ RAQD AV AS+RAAKLSHTQYR Sbjct: 377 RARAVYEEDVAVYRQTVLNAFREVEDNLANLRILSDQTRAQDAAVEASARAAKLSHTQYR 436 Query: 455 EGAVSYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGWGGP 502 EG++SY VI+ADR+VL QQR +V L GE+ARS V+LIRA+GGGWG P Sbjct: 437 EGSISYLDVIEADRSVLLQQRVAVQLSGEQARSAVDLIRAIGGGWGNP 484 >ref|YP_784862.1| multidrug efflux system outer membrane protein [Bordetella avium 197N] emb|CAJ47929.1| multidrug efflux system outer membrane protein [Bordetella avium 197N] Length = 496 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 327/461 (70%), Positives = 384/461 (83%), Gaps = 5/461 (1%) Query: 39 VAPTYERPAVDTPATFKEAAPAPQTGENGSQWKTAQPAEDIARGEWWKIFGDDGLNALEV 98 V P Y +PA TPA +KEAAP + WKTAQP+E RGEWWKIFGD LNA++ Sbjct: 23 VGPDYHQPAAATPARYKEAAP-----QEAGNWKTAQPSEAALRGEWWKIFGDTALNAMQE 77 Query: 99 QALEANQNLKAAAARLSQSRALRQDARSGLFPQVNAGFGATRQRPSPASQGLAPDANTTP 158 +AL ANQ+LKAAAARL+Q+RAL++DAR+ FP+V+AG G RQRPSPASQ L+ +A+ + Sbjct: 78 EALGANQSLKAAAARLAQARALQRDARADFFPKVDAGVGPNRQRPSPASQDLSDNASPSA 137 Query: 159 NTLWRAQLGVSYEADLFGRVASTVDAATADAQRSEALFHSVLLALQADVAQQYFQVRELD 218 +T WRAQ +YEADLFGRVA++VDAATADAQ+SEAL+ S+LLALQADVA YF VRE D Sbjct: 138 STQWRAQASAAYEADLFGRVANSVDAATADAQQSEALYRSILLALQADVASTYFLVRERD 197 Query: 219 AAAELYRGTVELRQESLRLVQRRFDEGDISEVDVARARSELASAQSEALGIARQRATAEH 278 A ++LYR TV LR+ SL L+QRRF+ GDI E+D+ARA+SELA AQ+EALG+ RQRATAEH Sbjct: 198 AESQLYRQTVALREASLTLIQRRFEAGDIGELDLARAKSELAQAQAEALGVDRQRATAEH 257 Query: 279 ALAILLGRTPAEFSLPPQPLTRLSVSVPAGLPSTLLERRPDIAAAERAMAAANARVGVAK 338 ALA+LLG+TPAEFS+PPQPL L V+VPAGLPS LLERRPDIAAAERAMA+ANARVGVAK Sbjct: 258 ALAVLLGKTPAEFSMPPQPLKPLLVTVPAGLPSALLERRPDIAAAERAMASANARVGVAK 317 Query: 339 SAFFPALNLTGGLGYESAQLGDLFNWSSRTFLLGPLVGTALSMPLFDGGRRQAGVDRARA 398 SAFFP L +TG LGYES+QL LF WSSRTFLLGPLVGTALS+P+FDGGRRQA +DRA A Sbjct: 318 SAFFPRLEITGALGYESSQLSKLFQWSSRTFLLGPLVGTALSLPIFDGGRRQASLDRALA 377 Query: 399 SYEEQVATYRGTVLNAFREVEDNLANLRILDDQNRAQDEAVAASSRAAKLSHTQYREGAV 458 YEE VA YR TVL+AFREVEDNLANLRIL +Q +AQ EAV AS+RAA +SH QYREG++ Sbjct: 378 VYEEDVAQYRQTVLSAFREVEDNLANLRILGNQTQAQSEAVDASARAASISHAQYREGSI 437 Query: 459 SYFSVIDADRTVLQQQRASVTLDGERARSTVNLIRALGGGW 499 SY VI+ADRTVL Q+R SV L GE+ARSTV+LIRALGGGW Sbjct: 438 SYLDVIEADRTVLTQRRLSVQLTGEQARSTVDLIRALGGGW 478