BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0173.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773750.1| HlyD-family secretion protein [Herbaspirillu... 546 e-153 gb|EFV85475.1| HlyD family secretion protein [Achromobacter xylo... 430 e-118 gb|EGP47179.1| RND family efflux transporter MFP subunit 8 [Achr... 428 e-118 ref|ZP_06684534.1| multidrug efflux pump BpeE [Achromobacter pie... 428 e-118 ref|YP_003981897.1| RND family efflux transporter MFP subunit 8 ... 424 e-116 >ref|YP_003773750.1| HlyD-family secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ61842.1| HlyD-family secretion protein [Herbaspirillum seropedicae SmR1] Length = 399 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 330/388 (85%), Positives = 352/388 (90%), Gaps = 2/388 (0%) Query: 5 MSSKITLRHRYTVTAAVFAVIAIAVAGTLSAIGVDSTANAQQAPQAAG--VDVAEVVQRQ 62 M + LR R+ +TA V AVIA++V G +S +G+ + A + AAG VDVAEVV RQ Sbjct: 1 MQTPAPLRKRFALTATVLAVIALSVGGAISVVGLSANATTAPSAAAAGAPVDVAEVVSRQ 60 Query: 63 IIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPRPYEAEVARAE 122 IIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPRPYEAEVARAE Sbjct: 61 IIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPRPYEAEVARAE 120 Query: 123 AQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAAANVQAAQAALRSARL 182 AQLAGAEARAGYTASDLARGQRLL DNAIAKRDFEEKQNASREA+ANV AA+AALR+ARL Sbjct: 121 AQLAGAEARAGYTASDLARGQRLLSDNAIAKRDFEEKQNASREASANVAAARAALRAARL 180 Query: 183 NLEYTQIVAPVSGRISRAEVTVGNIVSVGSATPALSTLVSVAKVYASFDVDEQSFLKYVN 242 NLEYT+I APVSGRISRAEVTVGN+V+ G+A L+TLVSVAKVYASFDVDEQSFLKYVN Sbjct: 181 NLEYTRITAPVSGRISRAEVTVGNVVNPGAANAPLTTLVSVAKVYASFDVDEQSFLKYVN 240 Query: 243 PARAKGTSVAVFMGLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYA 302 PARA G +V V +GLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDNA+ QLVPGLYA Sbjct: 241 PARAAGATVPVELGLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDNANSQLVPGLYA 300 Query: 303 RVRLGGGEPHQAVLIDEKALGTDQDKRFVMVADKDNKANYRQVVVGAGHDGLVVIEKGLQ 362 RVRLGGGEPHQAVLIDEKA+GTDQDKRFVMVADKDN ANYRQVVVGAGHDGLVVIEKGLQ Sbjct: 301 RVRLGGGEPHQAVLIDEKAIGTDQDKRFVMVADKDNHANYRQVVVGAGHDGLVVIEKGLQ 360 Query: 363 PGERIVVNGLQRIRPGDPITPTVVPMQT 390 PGERIVVNGLQRIRPGD ITPTVVPMQT Sbjct: 361 PGERIVVNGLQRIRPGDAITPTVVPMQT 388 >gb|EFV85475.1| HlyD family secretion protein [Achromobacter xylosoxidans C54] Length = 396 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 248/337 (73%), Positives = 289/337 (85%), Gaps = 1/337 (0%) Query: 53 VDVAEVVQRQIIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPR 112 V+VAEVV + I+DWQ YSGR+EA+DRV++RPLV GTLTAVHF+DG++VKKGDVLFTIDPR Sbjct: 46 VEVAEVVSKTIVDWQRYSGRLEAIDRVDIRPLVSGTLTAVHFQDGSIVKKGDVLFTIDPR 105 Query: 113 PYEAEVARAEAQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAAANVQA 172 PY AEV RA A L A+ARA YTA++LARGQRLL DNAIA+RDFEEKQNA+REAAAN+Q Sbjct: 106 PYAAEVDRAAAALTAAKARASYTATELARGQRLLADNAIARRDFEEKQNAAREAAANLQG 165 Query: 173 AQAALRSARLNLEYTQIVAPVSGRISRAEVTVGNIVSVGSATPALSTLVSVAKVYASFDV 232 AQAAL A+LNL YT+I APV+GR+SRAEVTVGN+V+ G+A+ L+TLVSV+K+YASFDV Sbjct: 166 AQAALDYAKLNLGYTRIEAPVAGRVSRAEVTVGNVVAAGAASVPLTTLVSVSKMYASFDV 225 Query: 233 DEQSFLKYVNPAR-AKGTSVAVFMGLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDN 291 DEQ+FLKYVNPAR K SV V +GLANEDGYSR G V SVDNRLD SGTIRVRA FDN Sbjct: 226 DEQTFLKYVNPARNGKAGSVPVELGLANEDGYSRTGFVQSVDNRLDATSGTIRVRAEFDN 285 Query: 292 ADGQLVPGLYARVRLGGGEPHQAVLIDEKALGTDQDKRFVMVADKDNKANYRQVVVGAGH 351 ADG L+PGLYAR+RLGG EP AVLIDEKA+GTDQDKR+V+V D N ANYRQV +GA Sbjct: 286 ADGTLLPGLYARIRLGGSEPRSAVLIDEKAIGTDQDKRYVLVLDDKNHANYRQVKLGANQ 345 Query: 352 DGLVVIEKGLQPGERIVVNGLQRIRPGDPITPTVVPM 388 +GL V++ GL GERIVVNGLQR+RPGD ++PTVVPM Sbjct: 346 EGLRVVDSGLAAGERIVVNGLQRVRPGDAVSPTVVPM 382 >gb|EGP47179.1| RND family efflux transporter MFP subunit 8 [Achromobacter xylosoxidans AXX-A] Length = 388 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 246/337 (72%), Positives = 287/337 (85%), Gaps = 1/337 (0%) Query: 53 VDVAEVVQRQIIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPR 112 V+VAEVV + I+DWQ YSGR+EA+DRV++RPLV GTLTAVHF+DG++VKKGDVLFTIDPR Sbjct: 38 VEVAEVVNKTIVDWQRYSGRLEAIDRVDIRPLVSGTLTAVHFQDGSIVKKGDVLFTIDPR 97 Query: 113 PYEAEVARAEAQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAAANVQA 172 PY AEV RA A L A+ARA YTA++LARGQRLL DNAIA+RDFEEKQNA+REAAAN+Q Sbjct: 98 PYAAEVDRAAAALTAAKARASYTATELARGQRLLTDNAIARRDFEEKQNAAREAAANLQG 157 Query: 173 AQAALRSARLNLEYTQIVAPVSGRISRAEVTVGNIVSVGSATPALSTLVSVAKVYASFDV 232 AQAAL A+LNL YT+I APV+GR+SRAEVTVGN+V+ G+ + L+TLVSV+K+YASFDV Sbjct: 158 AQAALDYAKLNLGYTRIEAPVAGRVSRAEVTVGNVVAAGATSVPLTTLVSVSKMYASFDV 217 Query: 233 DEQSFLKYVNPAR-AKGTSVAVFMGLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDN 291 DEQ+FLKYVNPAR K SV V +GLANEDGYSR G V SVDNRLD SGTIRVRA FDN Sbjct: 218 DEQTFLKYVNPARNGKAGSVPVELGLANEDGYSRTGFVQSVDNRLDATSGTIRVRAEFDN 277 Query: 292 ADGQLVPGLYARVRLGGGEPHQAVLIDEKALGTDQDKRFVMVADKDNKANYRQVVVGAGH 351 ADG L+PGLYAR+RLGG EP AVLIDEKA+GTDQDKR+V+V D N ANYR V +GA Sbjct: 278 ADGTLLPGLYARIRLGGSEPRSAVLIDEKAIGTDQDKRYVLVLDDKNHANYRLVKLGANQ 337 Query: 352 DGLVVIEKGLQPGERIVVNGLQRIRPGDPITPTVVPM 388 +GL V++ GL GERIVVNGLQR+RPGD ++PTVVPM Sbjct: 338 EGLRVVDSGLAAGERIVVNGLQRVRPGDAVSPTVVPM 374 >ref|ZP_06684534.1| multidrug efflux pump BpeE [Achromobacter piechaudii ATCC 43553] gb|EFF78562.1| multidrug efflux pump BpeE [Achromobacter piechaudii ATCC 43553] Length = 398 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 256/364 (70%), Positives = 299/364 (82%), Gaps = 3/364 (0%) Query: 40 STANAQQAPQAAGVDVAEVVQRQIIDWQSYSGRIEAVDRVEVRPLVGGTLTAVHFKDGAL 99 + A AQ AP A V+VAEV+ + I+DWQ YSGR+EA+DRV++RPLV GTLT VHF+DG++ Sbjct: 33 NVAVAQGAPSAPPVEVAEVINKTIVDWQRYSGRLEAIDRVDIRPLVSGTLTQVHFQDGSI 92 Query: 100 VKKGDVLFTIDPRPYEAEVARAEAQLAGAEARAGYTASDLARGQRLLGDNAIAKRDFEEK 159 VKKGDVLFTIDPRPY AEV RA A L A+ARA YTA++LARGQRLL DNAIA+RDFEEK Sbjct: 93 VKKGDVLFTIDPRPYAAEVDRAAAALTAAKARASYTATELARGQRLLADNAIARRDFEEK 152 Query: 160 QNASREAAANVQAAQAALRSARLNLEYTQIVAPVSGRISRAEVTVGNIVSVGSATPALST 219 QNASREAAAN+Q AQAAL A+LNL YT+I APV+GR+SRAEVTVGN+V+ G+A+ L+T Sbjct: 153 QNASREAAANLQGAQAALDYAKLNLGYTRIEAPVTGRVSRAEVTVGNVVAAGAASVPLTT 212 Query: 220 LVSVAKVYASFDVDEQSFLKYVNPAR-AKGTSVAVFMGLANEDGYSRKGRVGSVDNRLDT 278 LVSV+K+YASFDVDEQ+FLKYVNPAR + SV V +GLANE+GYSR G V SVDNRLD Sbjct: 213 LVSVSKMYASFDVDEQTFLKYVNPARNGRAGSVPVELGLANEEGYSRTGVVQSVDNRLDA 272 Query: 279 ASGTIRVRAIFDNADGQLVPGLYARVRLGGGEPHQAVLIDEKALGTDQDKRFVMVADKDN 338 SGTIRVRA FDNADG L+PGLYARVRLGG +P AVLIDEKA+GTDQDKR+V+V D N Sbjct: 273 TSGTIRVRAEFDNADGSLLPGLYARVRLGGSDPRSAVLIDEKAIGTDQDKRYVLVLDDKN 332 Query: 339 KANYRQVVVGAGHDGLVVIEKGLQPGERIVVNGLQRIRPGDPITPTVVPMQTQAATAAPA 398 A YRQV +GA +GL V++ GL GERIVVNGLQRIRPGD ++PTVVPM AA AP Sbjct: 333 HAVYRQVKLGANQEGLRVVDSGLSAGERIVVNGLQRIRPGDAVSPTVVPM--VAAQRAPV 390 Query: 399 PAAG 402 A Sbjct: 391 QTAA 394 >ref|YP_003981897.1| RND family efflux transporter MFP subunit 8 [Achromobacter xylosoxidans A8] gb|ADP19182.1| efflux transporter, RND family, MFP subunit 8 [Achromobacter xylosoxidans A8] Length = 398 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 260/379 (68%), Positives = 307/379 (81%), Gaps = 2/379 (0%) Query: 12 RHRYTVTAAVFAVIAIAVAGTL-SAIGVDSTANAQQAPQAAGVDVAEVVQRQIIDWQSYS 70 R+R V A AVIA L A + A AQ AP A V+VAEV+ + I+DWQ YS Sbjct: 4 RNRIAVLAVFAAVIAAGGGYALFRAPAGANAAQAQTAPAAPPVEVAEVLNKTIVDWQRYS 63 Query: 71 GRIEAVDRVEVRPLVGGTLTAVHFKDGALVKKGDVLFTIDPRPYEAEVARAEAQLAGAEA 130 GR+EA+DRV++RPLV GTLTAVHF+DG++VKKGDVLFTIDPRPY AEV RA A L A+A Sbjct: 64 GRLEAIDRVDIRPLVSGTLTAVHFQDGSIVKKGDVLFTIDPRPYAAEVDRAAAALTAAKA 123 Query: 131 RAGYTASDLARGQRLLGDNAIAKRDFEEKQNASREAAANVQAAQAALRSARLNLEYTQIV 190 RA YTA++LARGQRLL DNAIA+RDFEEKQNA+REAAAN+Q AQAAL A+LNL YT+I Sbjct: 124 RASYTATELARGQRLLTDNAIARRDFEEKQNAAREAAANLQGAQAALDYAKLNLGYTRIE 183 Query: 191 APVSGRISRAEVTVGNIVSVGSATPALSTLVSVAKVYASFDVDEQSFLKYVNPAR-AKGT 249 APV+GR+SRAEVTVGN+V+ G+A+ L+ LVSV+K+YASFDVDEQ+FL+YVNPAR + Sbjct: 184 APVAGRVSRAEVTVGNVVAAGAASVPLTRLVSVSKMYASFDVDEQTFLRYVNPARGGRSG 243 Query: 250 SVAVFMGLANEDGYSRKGRVGSVDNRLDTASGTIRVRAIFDNADGQLVPGLYARVRLGGG 309 +V V +GLANE+GYSR G V SVDNRLDT SGTIRVRA FDNADG L+PGLYARVRLGG Sbjct: 244 AVPVELGLANEEGYSRTGVVQSVDNRLDTTSGTIRVRAEFDNADGMLLPGLYARVRLGGS 303 Query: 310 EPHQAVLIDEKALGTDQDKRFVMVADKDNKANYRQVVVGAGHDGLVVIEKGLQPGERIVV 369 +P QAVLIDEKA+GTDQDKR+V+V D N A YRQ+ +GA +GL V++ GL GERIVV Sbjct: 304 DPRQAVLIDEKAIGTDQDKRYVLVLDDKNHAVYRQIKLGANQEGLRVVDSGLAAGERIVV 363 Query: 370 NGLQRIRPGDPITPTVVPM 388 NGLQRIRPGD +TPTVVPM Sbjct: 364 NGLQRIRPGDAVTPTVVPM 382