BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0171.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773752.1| LysR family transcription regulator protein ... 659 0.0 ref|YP_545898.1| LysR family transcriptional regulator [Methylob... 517 e-144 gb|EGW60779.1| transcriptional regulator, LysR family [Dechloros... 500 e-139 ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus... 473 e-131 ref|YP_003731372.1| LysR family transcriptional regulator [Acine... 472 e-131 >ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61844.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 309/337 (91%), Positives = 332/337 (98%) Query: 69 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESMLKVRLLNRTTRRISLTP 128 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTL+QGLESML+VRLLNRTTRRISLTP Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 129 DGAAYYERCVRILADVEETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYSKYPD 188 DGAAYYERCVRILAD++ETEQSFRNVTRGPQGRLRIDVP S+GRLMLLPNLCDFY++YPD Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 189 IELVMGMGDRPVDLVQEAVDCVIRIGDLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 248 IEL+MGMGDRPVDLVQEAVDCVIRIG+LQDSSMVARRIGTFQTVTCAAP+YLERHGVPHT Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 Query: 249 LEDLQQHQSVHYFSGRTGRTIDWDFVVDGITREVKMNGRLSVNDADAYVECALQGFGMVQ 308 +EDLQQH++VHYFS RTGRTIDWDFVV+G+TREVKMNG+L+VN+ADAYVECALQGFGMVQ Sbjct: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 Query: 309 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFATCPLN 368 APLYMVTRHIDEGRLVEVLSQWKPAP+PISVVYLHNRHLSPKVRAFVDWVAELFATCPL+ Sbjct: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPLH 300 Query: 369 KACTMGMEESECHFVNKPESTTVRTVVEQYNIAESVF 405 KACTMGMEESEC FV+K E++TVR VVEQYNIAESVF Sbjct: 301 KACTMGMEESECRFVDKAETSTVRNVVEQYNIAESVF 337 >ref|YP_545898.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gb|ABE50057.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 338 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 237/337 (70%), Positives = 283/337 (83%) Query: 69 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESMLKVRLLNRTTRRISLTP 128 MDR QAMQVFT VVDANSFTRAAD+L LPRTTVTT IQ LE +L VRLLNRTTRR+SLTP Sbjct: 2 MDRLQAMQVFTRVVDANSFTRAADSLGLPRTTVTTTIQALEGLLNVRLLNRTTRRLSLTP 61 Query: 129 DGAAYYERCVRILADVEETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYSKYPD 188 DGAAYYERC+RILA+V+ETE FR+VTRGP GRLRIDVP SIGRL+++P LCDFY++YPD Sbjct: 62 DGAAYYERCMRILAEVDETEALFRDVTRGPSGRLRIDVPPSIGRLIIIPKLCDFYTRYPD 121 Query: 189 IELVMGMGDRPVDLVQEAVDCVIRIGDLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 248 +ELV+GM DRPVD+VQEAVDCV+R+GDLQDSSMVARRIGTF VTCAAP YL +G+P T Sbjct: 122 VELVIGMSDRPVDMVQEAVDCVVRVGDLQDSSMVARRIGTFHIVTCAAPRYLAEYGMPGT 181 Query: 249 LEDLQQHQSVHYFSGRTGRTIDWDFVVDGITREVKMNGRLSVNDADAYVECALQGFGMVQ 308 L+DLQ H +VHYFS RTGR +DWDFV++G EVKM GR++VND++ YV CALQGFG++Q Sbjct: 182 LDDLQHHHAVHYFSSRTGRNMDWDFVIEGKVTEVKMAGRVAVNDSEVYVACALQGFGLIQ 241 Query: 309 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFATCPLN 368 AP YMV ++ G LVEVL QW+P+ PISVVYLHNRHLSPKVRAFVDW+AELF +CPL Sbjct: 242 APRYMVLPQLESGELVEVLPQWQPSSHPISVVYLHNRHLSPKVRAFVDWIAELFGSCPLL 301 Query: 369 KACTMGMEESECHFVNKPESTTVRTVVEQYNIAESVF 405 C+ M E+EC F + T+R ++++ N+AE+VF Sbjct: 302 GGCSSDMVENECRFAQCEQGNTMRGIIDRNNVAEAVF 338 >gb|EGW60779.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 335 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 236/336 (70%), Positives = 281/336 (83%), Gaps = 6/336 (1%) Query: 69 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESMLKVRLLNRTTRRISLTP 128 MDRFQAMQVFT VVDANSFTRAA+ L LPR TVTT+IQ LE++L+VRLLNRTTRRISLTP Sbjct: 1 MDRFQAMQVFTRVVDANSFTRAAETLGLPRATVTTIIQNLEALLQVRLLNRTTRRISLTP 60 Query: 129 DGAAYYERCVRILADVEETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYSKYPD 188 DGAAYYE C RILA+VEETE SFR+ RGP+GRLRIDVP IGRL+L+P+LCDF S+YPD Sbjct: 61 DGAAYYEHCARILAEVEETEASFRDAARGPKGRLRIDVPPPIGRLILIPHLCDFSSRYPD 120 Query: 189 IELVMGMGDRPVDLVQEAVDCVIRIGDLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 248 +ELV+GMGDR VDLV+EAVDCVIR+G+LQDSS+VARRIGTFQ++TC AP YLER+G PH+ Sbjct: 121 VELVIGMGDRAVDLVREAVDCVIRVGELQDSSLVARRIGTFQSITCGAPDYLERYGTPHS 180 Query: 249 LEDLQQHQSVHYFSGRTGRTIDWDFVVDGITREVKMNGRLSVNDADAYVECALQGFGMVQ 308 ++DLQQHQ+VHYFS RTGRTIDWDF+VDG+ VKM G++SVNDA+AY++CALQGFG++Q Sbjct: 181 IDDLQQHQAVHYFSTRTGRTIDWDFIVDGVFTPVKMAGKVSVNDAEAYLDCALQGFGLIQ 240 Query: 309 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFATCPLN 368 PL M H++ G L EVL P+P+PISV YL NRHLSPKVRAFVDWVA+LF TCPL Sbjct: 241 LPLLMALPHLESGALKEVLPHLTPSPMPISVAYLQNRHLSPKVRAFVDWVADLFGTCPL- 299 Query: 369 KACTMGMEES--ECHFVNKPESTTVRTVVEQYNIAE 402 G ES +C F P++ T+R ++EQ N AE Sbjct: 300 ---LGGQRESSPQCSFPTHPDTLTLRDMLEQQNRAE 332 >ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL95184.1| putative LysR-family transcriptional regulator protein [Azoarcus sp. BH72] Length = 335 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 227/337 (67%), Positives = 269/337 (79%), Gaps = 2/337 (0%) Query: 69 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESMLKVRLLNRTTRRISLTP 128 MDRFQAMQVFT VVDANSF+RAAD+L LPR TVT +IQ LE +L+VRLLNR+TRR+SLT Sbjct: 1 MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQ 60 Query: 129 DGAAYYERCVRILADVEETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYSKYPD 188 DGAAYYERCV ILADVEETE SFR+ GP+GRLRIDVP S+GRL+L+P LCDF+++YP+ Sbjct: 61 DGAAYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPE 120 Query: 189 IELVMGMGDRPVDLVQEAVDCVIRIGDLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 248 +E+ +GM DRPVD+V+EAVDC +R+G L DSS+VARRIGTF VTCAAPSYLERHG P T Sbjct: 121 LEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGTFFLVTCAAPSYLERHGEPRT 180 Query: 249 LEDLQQHQSVHYFSGRTGRTIDWDFVVDGITREVKMNGRLSVNDADAYVECALQGFGMVQ 308 + +L H +V+YFS GRT+DWDFVVDG EVKM G +SVND DAY+ CALQGFGMVQ Sbjct: 181 IAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ 240 Query: 309 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFATCPLN 368 P +M H++ G L EVL QW PAP+PIS VY NRHLSPKVRAFVDWVAELFA CPL Sbjct: 241 MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLL 300 Query: 369 KACTMGMEESECHFVNKPESTTVRTVVEQYNIAESVF 405 T ++ C + KP T+R+VVEQ+N+AES Sbjct: 301 GG-TAAVDYC-CSYEGKPAGNTLRSVVEQHNLAESAL 335 >ref|YP_003731372.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] gb|ADI89999.1| LysR family transcriptional regulator [Acinetobacter sp. DR1] Length = 342 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 219/338 (64%), Positives = 268/338 (79%), Gaps = 4/338 (1%) Query: 69 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLIQGLESMLKVRLLNRTTRRISLTP 128 MD F AM+VF VV+ NSF+ AAD+L LPR +VTT IQGLE L+VRLLNRTTR++SLTP Sbjct: 1 MDLFHAMKVFNKVVETNSFSLAADSLGLPRASVTTTIQGLEKHLQVRLLNRTTRKLSLTP 60 Query: 129 DGAAYYERCVRILADVEETEQSFRNVTRGPQGRLRIDVPGSIGRLMLLPNLCDFYSKYPD 188 DGA YYER RILADVE+ E +F + RGP+GRLRIDV SIGRL+L+P LCDF+SKYPD Sbjct: 61 DGAVYYERTTRILADVEDVESTFHDSERGPRGRLRIDVKASIGRLILIPMLCDFHSKYPD 120 Query: 189 IELVMGMGDRPVDLVQEAVDCVIRIGDLQDSSMVARRIGTFQTVTCAAPSYLERHGVPHT 248 I+LV+GM DRPVDLVQ+AVDCVIRIG L+DSS+VARRIGT Q VT AAP YL HG P T Sbjct: 121 IDLVIGMSDRPVDLVQDAVDCVIRIGQLKDSSLVARRIGTIQCVTVAAPRYLAEHGEPKT 180 Query: 249 LEDLQQHQSVHYFSGRTGRTIDWDFVVDGITREVKMNGRLSVNDADAYVECALQGFGMVQ 308 + DLQ+HQ VHYF+ RTGR IDWDF+VDG V + GR+SVND D+Y++ A+QGFG++Q Sbjct: 181 INDLQKHQVVHYFNSRTGRNIDWDFMVDGEIHSVGVKGRVSVNDGDSYIDLAVQGFGLIQ 240 Query: 309 APLYMVTRHIDEGRLVEVLSQWKPAPLPISVVYLHNRHLSPKVRAFVDWVAELFATCPLN 368 P YMV +H++ G L EVL++W PAP+PISVVYL NRHLSPKVR FVDWVAELFA CPL Sbjct: 241 CPYYMVAKHLESGALREVLTEWLPAPMPISVVYLQNRHLSPKVRVFVDWVAELFAGCPLL 300 Query: 369 KACTMGMEESECHFVNKPEST---TVRTVVEQYNIAES 403 C+M +++ +C F + E T+RT+V+ N+AE+ Sbjct: 301 SGCSMSLDQ-KCEFASAKEHNHEYTIRTLVQNENMAEA 337