BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0169.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773753.1| AraC family transcription regulator protein ... 553 e-155 gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 3... 380 e-103 ref|YP_003980895.1| AraC family transcriptional regulator [Achro... 377 e-102 gb|EFV87711.1| AraC family Transcriptional regulator [Achromobac... 375 e-102 ref|YP_002944700.1| AraC family transcriptional regulator [Vario... 367 1e-99 >ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61845.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 301/338 (89%), Positives = 312/338 (92%), Gaps = 4/338 (1%) Query: 1 MDLDLHSVQDSGPLL----LPEAVESAPARQQDDPRFQAMQQELLQLLERTTAGVEGMLA 56 M+LDLH++QD+ LL A APA ++ RFQAMQQELLQLLE T GVEGML Sbjct: 1 MELDLHTIQDAAALLSPEAHDAAPAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLE 60 Query: 57 TAIPNLEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV 116 TAIPN+EIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV Sbjct: 61 TAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV 120 Query: 117 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPASANFGEGAARGLYVNRLDVDLLDAV 176 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPA+A EGAARGLYVNRLDVDLLDAV Sbjct: 121 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAV 180 Query: 177 LRLLRLHETPRDVPIMAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG 236 LRLLRL E P DVPI+APMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG Sbjct: 181 LRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG 240 Query: 237 YDQALRIEDVARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA 296 YDQALRI+D+ARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA Sbjct: 241 YDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA 300 Query: 297 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL 334 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL Sbjct: 301 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL 338 >gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 31 [Achromobacter xylosoxidans AXX-A] Length = 311 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 201/306 (65%), Positives = 244/306 (79%), Gaps = 2/306 (0%) Query: 24 PARQQDDPRFQAMQQELLQLLERTTAGVEGMLATAIPNLEIYRITCPSGPKHAVQKPVFA 83 PA +P F+ + ELL LLER T +EG L T + L ++R++ P+GPK +QK A Sbjct: 3 PADHTPNPVFEPARHELLCLLERMTGTLEGSLDTPVEGLYLHRLSQPTGPKPGLQKAALA 62 Query: 84 VIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGEL 143 VIAQGSKR+ +G+E YEYDP HYL++SVDLPVV KV V SP PYLGLRL+L+ +EI EL Sbjct: 63 VIAQGSKRLLIGEETYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLNPEEITEL 122 Query: 144 IGDENLPASANFGEGAARGLYVNRLDVDLLDAVLRLLRLHETPRDVPIMAPMIRREILYR 203 I DENLP ++R L +N L LLD +LRLLRL +TPRD+PI+APMI+RE+LYR Sbjct: 123 ISDENLPPLVP--AESSRALCINPLGGTLLDVMLRLLRLLDTPRDIPILAPMIKRELLYR 180 Query: 204 LLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIEDVARDVHMSVSSLHHHFKL 263 LLMNGQG +LRQTVLQDSQ+NRVAKAIR++++ Y Q LR+E++ARDVHMSVSSLHHHFK Sbjct: 181 LLMNGQGVVLRQTVLQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSSLHHHFKQ 240 Query: 264 VTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDK 323 TAMSPLQYQK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG PPLRDK Sbjct: 241 ATAMSPLQYQKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGTPPLRDK 300 Query: 324 RRWQEE 329 +RW++E Sbjct: 301 QRWKDE 306 >ref|YP_003980895.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18180.1| bacterial regulatory helix-turn-helix protein, AraC family protein 31 [Achromobacter xylosoxidans A8] Length = 320 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 200/302 (66%), Positives = 243/302 (80%), Gaps = 2/302 (0%) Query: 30 DPRFQAMQQELLQLLERTTAGVEGMLATAIPNLEIYRITCPSGPKHAVQKPVFAVIAQGS 89 D ++ ++ELL LER T +EG L T I L ++R++ P+G K +QK FAVIAQGS Sbjct: 17 DAAYEPARRELLCTLERMTGDLEGSLDTPIEGLFLHRLSQPTGAKPGLQKAAFAVIAQGS 76 Query: 90 KRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENL 149 KR+ +GDE YEYDP HYL++SV+LPVV KV V SP PYLGLRL+L+ +EI LI DENL Sbjct: 77 KRLLIGDEAYEYDPFHYLISSVELPVVAKVSVASPTLPYLGLRLDLNVEEITALISDENL 136 Query: 150 PASANFGEGAARGLYVNRLDVDLLDAVLRLLRLHETPRDVPIMAPMIRREILYRLLMNGQ 209 PA A R L VN L LLDAVLRLLRL +TPRD+PI+AP+++RE+LYRLLMNGQ Sbjct: 137 PAQPP--AEAGRALCVNPLGSVLLDAVLRLLRLLDTPRDIPILAPLVKRELLYRLLMNGQ 194 Query: 210 GALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIEDVARDVHMSVSSLHHHFKLVTAMSP 269 G +LRQ+VLQDSQ+NRVAKAIR++++ Y Q LR+E++ARDVHMSVSSLHHHFK TAMSP Sbjct: 195 GTVLRQSVLQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSSLHHHFKQATAMSP 254 Query: 270 LQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQEE 329 LQYQK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG+PPLRDK+RW++E Sbjct: 255 LQYQKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGSPPLRDKQRWKDE 314 Query: 330 EA 331 A Sbjct: 315 TA 316 >gb|EFV87711.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 315 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 200/297 (67%), Positives = 239/297 (80%), Gaps = 2/297 (0%) Query: 33 FQAMQQELLQLLERTTAGVEGMLATAIPNLEIYRITCPSGPKHAVQKPVFAVIAQGSKRI 92 F+ + ELL LLER T +EG L T I L ++RI+ P+GPK A+QK AVIAQGSKR+ Sbjct: 16 FEPARHELLCLLERMTGTLEGSLDTPIEGLFLHRISQPTGPKPALQKAALAVIAQGSKRV 75 Query: 93 FVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAS 152 +GDE YEYDP HYL++SVDLPVV KV V SP PYLGLRL+L+ +EI LI DENLP Sbjct: 76 LIGDEAYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLNPEEITALISDENLPPL 135 Query: 153 ANFGEGAARGLYVNRLDVDLLDAVLRLLRLHETPRDVPIMAPMIRREILYRLLMNGQGAL 212 A+R + VN L LLD +LRLLRL +TPRD+PI+APM++RE+LYRLLMNGQG + Sbjct: 136 VP--AEASRAMCVNPLGGTLLDVMLRLLRLLDTPRDIPILAPMVKRELLYRLLMNGQGVV 193 Query: 213 LRQTVLQDSQMNRVAKAIRLIKEGYDQALRIEDVARDVHMSVSSLHHHFKLVTAMSPLQY 272 LRQTVLQDSQ+NRVAKAIR++++ Y LR+E++ARDVHMSVSSLHHHFK TAMSPLQY Sbjct: 194 LRQTVLQDSQLNRVAKAIRILRDNYALPLRVEEIARDVHMSVSSLHHHFKQATAMSPLQY 253 Query: 273 QKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQEE 329 QK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG PPLRDK+RW++E Sbjct: 254 QKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGTPPLRDKQRWKDE 310 >ref|YP_002944700.1| AraC family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19434.1| transcriptional regulator, AraC family [Variovorax paradoxus S110] Length = 330 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 193/314 (61%), Positives = 236/314 (75%), Gaps = 2/314 (0%) Query: 13 PLLLPEAVESAPARQQDDPRFQAMQQELLQLLERTTAGVEGMLATAIPNLEIYRITCPSG 72 P PE + +P ++EL+ L+ R T G +G + T + L+++ I+ P G Sbjct: 2 PQDTPEIAAAIAQPMPLEPELDEARKELVALINRITRGQDGTVETPVAGLQVFCISKPDG 61 Query: 73 PKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLR 132 PKHA P +IAQGSKRI VGD+IY YDPMHYLV SVDLPV G+V +TS +EPYLG+R Sbjct: 62 PKHAFATPALGLIAQGSKRIIVGDDIYVYDPMHYLVTSVDLPVCGQVRLTSDNEPYLGVR 121 Query: 133 LELDTQEIGELIGDENLPASANFGEGAARGLYVNRLDVDLLDAVLRLLRLHETPRDVPIM 192 LEL EIG+LIGDE LPA AN A+RG+YVNR+ + +L+ VLRLLRL E+P DVPIM Sbjct: 122 LELAIDEIGKLIGDEKLPAKAN--APASRGMYVNRIGMPVLEPVLRLLRLVESPEDVPIM 179 Query: 193 APMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIEDVARDVHM 252 AP+I+REI+YRLL+NG+GA LRQ LQDS R+AKAI ++ Y Q+LRIED+AR VHM Sbjct: 180 APLIKREIMYRLLVNGEGARLRQIALQDSHTQRIAKAISALRINYSQSLRIEDMARAVHM 239 Query: 253 SVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYS 312 SVSS HHHFK VTAMSPLQYQK LRLQEAR+ +L A A V++AAH VGYES SQF+REYS Sbjct: 240 SVSSFHHHFKAVTAMSPLQYQKQLRLQEARRQMLMAGADVSSAAHSVGYESPSQFAREYS 299 Query: 313 RLFGAPPLRDKRRW 326 R+FGAPPLRDKRRW Sbjct: 300 RMFGAPPLRDKRRW 313