BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0167.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773755.1| transmembrane protein [Herbaspirillum serope...   228   2e-58
ref|ZP_06834458.1| antibiotic biosynthesis monooxygenase [Glucon...   139   1e-31
ref|NP_519971.1| hypothetical protein RSc1850 [Ralstonia solanac...   138   2e-31
ref|ZP_08862716.1| monooxygenase [Ruegeria sp. TW15]                  137   5e-31
ref|ZP_08859446.1| monooxygenase [Ruegeria sp. TW15]                  137   6e-31

>ref|YP_003773755.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61847.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 113/114 (99%), Positives = 113/114 (99%)

Query: 41  MRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISPQLH 100
           MRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFIS QLH
Sbjct: 1   MRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISTQLH 60

Query: 101 KGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGME 154
           KGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGME
Sbjct: 61  KGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGME 114


>ref|ZP_06834458.1| antibiotic biosynthesis monooxygenase [Gluconacetobacter hansenii
           ATCC 23769]
 gb|EFG84352.1| antibiotic biosynthesis monooxygenase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 122

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/114 (56%), Positives = 83/114 (72%)

Query: 40  QMRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISPQL 99
            ++PLD NFPI +QL    +PVVL+N+FT+D  D + F + WK DA +M++QPGFIS QL
Sbjct: 3   HLKPLDDNFPIERQLEIEAAPVVLINLFTLDAADEERFLEVWKDDAGFMKRQPGFISTQL 62

Query: 100 HKGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGM 153
           H+  GDS  ++NYAVWES   FR AFTHP+FR K   YP+SA+A PHLF  VG+
Sbjct: 63  HRALGDSPTYLNYAVWESNEAFRAAFTHPEFRSKLKAYPSSAIARPHLFQKVGV 116


>ref|NP_519971.1| hypothetical protein RSc1850 [Ralstonia solanacearum GMI1000]
 emb|CAD15552.1| hypothetical transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 164

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 84/108 (77%)

Query: 41  MRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISPQLH 100
           +RP+D NFPI +Q+  + SPVVLVN+F +D  D +AF + W+ DA++M++QPGFIS QLH
Sbjct: 4   IRPMDPNFPIQRQVELDASPVVLVNLFLLDKADEEAFLRVWQDDANFMKRQPGFISTQLH 63

Query: 101 KGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLF 148
           +  GDS  ++NYAVWES  HFR AF HP+FR K + YP+SAVASPHLF
Sbjct: 64  RAIGDSPAYLNYAVWESNAHFRAAFMHPEFRAKLSDYPSSAVASPHLF 111


>ref|ZP_08862716.1| monooxygenase [Ruegeria sp. TW15]
          Length = 122

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 86/115 (74%)

Query: 39  VQMRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISPQ 98
           V  +PLD  FPI +QL  +  PVVLVN+FTVD  + DA  +AWK+DA WM+KQPG+IS Q
Sbjct: 2   VSFKPLDPEFPIERQLGIDAGPVVLVNLFTVDPDEQDALVEAWKSDAQWMQKQPGYISTQ 61

Query: 99  LHKGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGM 153
           LHK  GD S++MNYA+WES  +FR AF++P+F+ + + YP+SAV +PHLF  V +
Sbjct: 62  LHKAVGDGSMYMNYAIWESVANFRAAFSNPEFQQQLSHYPSSAVTAPHLFEKVAV 116


>ref|ZP_08859446.1| monooxygenase [Ruegeria sp. TW15]
          Length = 122

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 64/115 (55%), Positives = 85/115 (73%)

Query: 39  VQMRPLDANFPIGKQLNGNESPVVLVNIFTVDTKDIDAFKKAWKADADWMRKQPGFISPQ 98
           V  +PLD  FPI +QL  +  PVVLVN+FTVD  D DA  +AWK+DA WM+KQPG+IS Q
Sbjct: 2   VNFKPLDPEFPIERQLGMDAGPVVLVNLFTVDPVDQDALIEAWKSDAQWMKKQPGYISTQ 61

Query: 99  LHKGAGDSSVFMNYAVWESTRHFRDAFTHPQFRDKPNLYPASAVASPHLFTLVGM 153
           LHK  GD S+++NYAVWES   FR AF++P+F+ + + YP+SAV +PHLF  + +
Sbjct: 62  LHKAIGDGSMYLNYAVWESVADFRAAFSNPEFQQQLSHYPSSAVTAPHLFEKIAV 116