BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0165.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773758.1| D-amino acid dehydrogenase small subunit [He... 665 0.0 ref|YP_004751206.1| D-amino acid dehydrogenase small subunit [Co... 490 e-136 ref|ZP_08871537.1| D-amino-acid dehydrogenase [Verminephrobacter... 308 9e-82 ref|YP_001860863.1| D-amino-acid dehydrogenase [Burkholderia phy... 305 1e-80 gb|EGP44552.1| D-amino acid dehydrogenase small subunit [Achromo... 305 1e-80 >ref|YP_003773758.1| D-amino acid dehydrogenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61850.1| D-amino acid dehydrogenase, small subunit, protein [Herbaspirillum seropedicae SmR1] Length = 421 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 342/420 (81%), Positives = 363/420 (86%), Gaps = 19/420 (4%) Query: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSV 60 MHICVMGAGVIGVTTAYRLLQDGHQVSLID R QPG GTSQGNGAQLSYSYVAPLADPSV Sbjct: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDERDQPGAGTSQGNGAQLSYSYVAPLADPSV 60 Query: 61 WTKWAYYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLT 120 W+KWAYYLFSKDSPLTI+PT + QYRWL FLR CNA VRQTTIDLLQLAFYSRDQLT Sbjct: 61 WSKWAYYLFSKDSPLTIKPTLEAAQYRWLAGFLRYCNAGSVRQTTIDLLQLAFYSRDQLT 120 Query: 121 QWNAGLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALG 180 QWN L+LSFDHQRSGKLVMFTDAQGLEAAA QV+FQ+QYGCQQEVL AA+CIRIEPALG Sbjct: 121 QWNGRLKLSFDHQRSGKLVMFTDAQGLEAAAGQVRFQAQYGCQQEVLDAAQCIRIEPALG 180 Query: 181 HSQRDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQA 240 SQRDWVGGVYT SEEAGDCP FCRALVA+MQA PNFRFIGGARI+ VRR+G AL AVQA Sbjct: 181 RSQRDWVGGVYTRSEEAGDCPAFCRALVAAMQADPNFRFIGGARITAVRRQGSALSAVQA 240 Query: 241 GGEWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDI 300 G EWI+A RFVLALGA+S +FAR LDLRLPLYPLKGYSITVPLED+ASR AAPQVSITDI Sbjct: 241 GNEWISAQRFVLALGADSADFARQLDLRLPLYPLKGYSITVPLEDEASRAAAPQVSITDI 300 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDATRS---- 356 ARKIVYARLGQRLRVAGRIELVGQDRSIPP AI EL+ G+RELFP C LGEDA S Sbjct: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPRAIAELKQGMRELFPDCVLGEDARLSPWMG 360 Query: 357 ---------------PVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAFQYR 401 PV+NL+ NIGQGALGWTLACGSAAL+ADQIAGR +IDDT F+YR Sbjct: 361 FRPATPSGVPIVGACPVDNLYLNIGQGALGWTLACGSAALIADQIAGRPCSIDDTPFRYR 420 >ref|YP_004751206.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] gb|AEK60383.1| D-amino acid dehydrogenase small subunit [Collimonas fungivorans Ter331] Length = 422 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 257/420 (61%), Positives = 307/420 (73%), Gaps = 20/420 (4%) Query: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSV 60 MHICV+GAGVIGVT+AYRLL+ GHQV+L+DA PG TS GNGAQLS+SYVAPLADPSV Sbjct: 1 MHICVLGAGVIGVTSAYRLLEAGHQVTLVDAEALPGSQTSLGNGAQLSFSYVAPLADPSV 60 Query: 61 WTKWAYYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLT 120 WT W YLFS SPLT+RP D Q+RWL +FL CN RVRQTTIDLL+LAF+SR+QL Sbjct: 61 WTHWPEYLFSAASPLTLRPQMDPAQWRWLFKFLAACNTGRVRQTTIDLLRLAFFSREQLQ 120 Query: 121 QWNAGLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALG 180 Q QL F H+R+GKLVM+ DA+GLE A +Q++FQ+ +GCQQE++ AA C++IEPAL Sbjct: 121 QLTQVQQLDFQHRRAGKLVMYGDAKGLEGARKQIEFQALHGCQQEIIDAARCMQIEPALA 180 Query: 181 HSQRDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQA 240 +++RDWVGGVYTPSEEAGDC FCR LV +M P FRF RI ++ AL AV A Sbjct: 181 NAKRDWVGGVYTPSEEAGDCALFCRQLVEAMSQQPGFRFAHSQRIHKLEMRNGALTAVHA 240 Query: 241 GGEWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDI 300 G E IAA+ FVLALGA S FAR LPLYPLKGYSITVPL D A++ AAPQVSITD+ Sbjct: 241 GQEQIAANTFVLALGAASAGFARHAGFSLPLYPLKGYSITVPLNDAATQAAAPQVSITDL 300 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDA------- 353 +RKIVYARLG RLRVAGR+ELVG DRSIP +AI+EL+ G ELFPGC D+ Sbjct: 301 SRKIVYARLGNRLRVAGRVELVGMDRSIPASAIDELKRGASELFPGCGDLSDSAGLSPWS 360 Query: 354 -------------TRSPVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAFQY 400 + SPV+NL+ N+G G+LGWTLA GSA+L+A IAG +ID F + Sbjct: 361 GFRPATPSGVPLISASPVKNLYLNVGHGSLGWTLAHGSASLLAQLIAGGATSIDAAPFAF 420 >ref|ZP_08871537.1| D-amino-acid dehydrogenase [Verminephrobacter sp. At4] Length = 402 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 184/406 (45%), Positives = 241/406 (59%), Gaps = 25/406 (6%) Query: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSV 60 M +CV+GAG++G+ AY L G QV++ID R QPG G S GNGAQLSYSYV PLAD + Sbjct: 1 MQVCVLGAGIVGLAAAYELQLRGMQVTVID-RAQPGAGASSGNGAQLSYSYVQPLADAGI 59 Query: 61 WTKWAYYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLT 120 W + L S S +RP D Q+RW +EFLR CN +++ LL LA SR +L Sbjct: 60 WRQLPRLLLSPHSAFRLRPQWDWQQWRWGLEFLRACNRHTSERSSQYLLALAALSRQRLE 119 Query: 121 QWNAGLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALG 180 +L D R+GKLV++ GL AA +Q+Q Q +GC+Q+ + A C+ IEPAL Sbjct: 120 AMLQAERLDCDFSRTGKLVLYDTPAGLAAARRQMQLQQTWGCKQQAVSAERCLEIEPALQ 179 Query: 181 HSQRDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQA 240 H QR G +YTP E A DC + C+ L A + A RF+ G + R+G + AV+ Sbjct: 180 HCQRHIEGAIYTPDECAADCLRVCQGLQA-LLAERGVRFLLGTTVQGFERQGARISAVKT 238 Query: 241 GGEWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDI 300 + A +FVL+LG+ S AR L LRLP+YPLKGYSIT+ D + A P+V++TD Sbjct: 239 DAGAVPAQQFVLSLGSASHALARTLGLRLPVYPLKGYSITL----DTAAAATPRVNVTDA 294 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGED-------- 352 ARK+V+ARLG+RLRVAG ELVG D IPPA I+ L R LFPGC+ + Sbjct: 295 ARKVVFARLGRRLRVAGMAELVGHDARIPPARIQSLCRATRALFPGCSDFAELRPWSGLR 354 Query: 353 ---ATRSPV--------ENLHFNIGQGALGWTLACGSAALVADQIA 387 T PV ENL N G GALG+TLA G+AA + + +A Sbjct: 355 PATPTGLPVVGRRSDAPENLLLNTGHGALGFTLAFGTAAQLVELLA 400 >ref|YP_001860863.1| D-amino-acid dehydrogenase [Burkholderia phymatum STM815] gb|ACC73817.1| D-amino-acid dehydrogenase [Burkholderia phymatum STM815] Length = 416 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 174/417 (41%), Positives = 244/417 (58%), Gaps = 20/417 (4%) Query: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSV 60 M +CV+GAGV+G+TTA+ L +DGH V++++AR S NG QLSYSYVAPLADP+V Sbjct: 1 MRVCVLGAGVVGLTTAWSLARDGHDVTVVEARGGAALEASFANGGQLSYSYVAPLADPAV 60 Query: 61 WTKWAYYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLT 120 K +L +DS L P D Q+RW FL C + R RQT +++L L S+ L Sbjct: 61 LPKLPAWLLQRDSALRFVPRFDAQQWRWCAAFLLACRSHRARQTALEMLSLGALSKAALH 120 Query: 121 QWNAGLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALG 180 + ++FD+ R+GKLV++ D+ E A +++ G Q L ++C +EPAL Sbjct: 121 EIVERESIAFDYVRNGKLVVYRDSHDFERARHKMERLVAAGSDQRALDGSQCAMLEPALA 180 Query: 181 HSQRDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQA 240 H+Q GG++TPSEEAGDC +F AL +++A F R+ E+ R+G + A + Sbjct: 181 HAQPLIAGGIHTPSEEAGDCQRFSVALADALRARHRVTFHYDTRVRELVRKGPHIVAART 240 Query: 241 GGEWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDI 300 I AD FV+ALG SV L +RLP+YPL GYS+T+ DDA AP+VS+TD+ Sbjct: 241 ASGDIEADAFVVALGLGSVPLVAALGVRLPIYPLTGYSLTI---DDADPRHAPRVSVTDL 297 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGEDAT------ 354 RK+V+A LG+RLR+AG +E+ G A IE L+ +E+FP +A Sbjct: 298 HRKVVFAPLGERLRIAGMVEIAGLPDVQRAARIELLKRQAQEIFPAAGDYANAQAWCGHR 357 Query: 355 -----------RSPVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAFQY 400 R+P NL N G GALG+TLACGSA ++AD IAGR ++D A+ Y Sbjct: 358 PATPDSKPLIGRTPYGNLWLNTGHGALGFTLACGSARVIADMIAGRPASVDIAAYAY 414 >gb|EGP44552.1| D-amino acid dehydrogenase small subunit [Achromobacter xylosoxidans AXX-A] Length = 415 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 180/416 (43%), Positives = 239/416 (57%), Gaps = 19/416 (4%) Query: 1 MHICVMGAGVIGVTTAYRLLQDGHQVSLIDARQQPGEGTSQGNGAQLSYSYVAPLADPSV 60 M +CV+GAGV+GVT+AY L + GH+V L+D+ P E +S NG QLSYSYVAPLA P V Sbjct: 1 MRVCVIGAGVVGVTSAYFLARQGHEVVLVDSHAHPAEVSSYANGGQLSYSYVAPLAGPGV 60 Query: 61 WTKWAYYLFSKDSPLTIRPTADLDQYRWLVEFLRCCNAQRVRQTTIDLLQLAFYSRDQLT 120 +L +DSPL RP D Q+RW + F C A R++T L L+F SRD + Sbjct: 61 LPNVPGWLLREDSPLRFRPRLDPHQWRWCLRFALACRASVARESTAQLQALSFLSRDAMH 120 Query: 121 QWNAGLQLSFDHQRSGKLVMFTDAQGLEAAAQQVQFQSQYGCQQEVLGAAECIRIEPALG 180 L F H R+GKL+ + A LE A V +Q+ +G +QEVL AA+ ++ EPAL Sbjct: 121 ALLEQENLEFGHLRNGKLIAYRSAALLEKARALVAYQAAHGAEQEVLDAAQTLQREPALA 180 Query: 181 HSQRDWVGGVYTPSEEAGDCPQFCRALVASMQAHPNFRFIGGARISEVRREGHALRAVQA 240 G +YTPSEEAGDC QF +AL +QA PN + ++ ++REG + AV Sbjct: 181 GMGASLAGAIYTPSEEAGDCRQFTQALFERLQALPNVQCAMSNPVAGLQREGRRIVAVHT 240 Query: 241 GGEWIAADRFVLALGAESVEFARLLDLRLPLYPLKGYSITVPLEDDASRTAAPQVSITDI 300 I AD VLA G + + L +PLYPLKGYS+TVPL DD T AP++S+TD Sbjct: 241 RDGDIGADAVVLATGIGTRALLQPLGHDVPLYPLKGYSLTVPLADD--DTVAPRISVTDY 298 Query: 301 ARKIVYARLGQRLRVAGRIELVGQDRSIPPAAIEELRNGLRELFPGCALGED-------- 352 R+IVYAR+G LR+A +++ + I PA I L+ +RE FP L + Sbjct: 299 ERRIVYARVGGVLRIAAMVDIGSANADIDPARIALLKRQVREAFPALDLAQAIPWAGLRP 358 Query: 353 ---------ATRSPVENLHFNIGQGALGWTLACGSAALVADQIAGRRRAIDDTAFQ 399 S +NL NIGQGALG+TLACGSAAL+ Q+AG +D F+ Sbjct: 359 ATPTGKPLIGRSSAADNLWLNIGQGALGFTLACGSAALLTAQMAGLETPLDALPFR 414