BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0157.p (508 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- ... 887 0.0 ref|YP_004754593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 608 e-172 ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 600 e-169 ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-... 585 e-165 ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di... 537 e-150 >ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase [Herbaspirillum seropedicae SmR1] Length = 508 Score = 887 bits (2292), Expect = 0.0, Method: Composition-based stats. Identities = 471/508 (92%), Positives = 485/508 (95%) Query: 1 MSQRVPSLQEILAWLRQASPSAQLTSDSRRVAAGDVFFAYVGDADGRSYIADAVERGAAA 60 M +R +L +I AWLRQA+PSAQLTSDSRRVA GDVFFAYVGDADGRSYIADAVERGAAA Sbjct: 1 MPERALNLHDIQAWLRQAAPSAQLTSDSRRVAPGDVFFAYVGDADGRSYIADAVERGAAA 60 Query: 61 VLYEADGYSWPEQIDAPHLAVPDLKMRAGEIAAAWYGQPDQHMLTVAVTGTNGKTSCAYW 120 V+YEA G++WP QID PHLAV DLK AGEIAA+WYGQPDQ MLTVAVTGTNGKTSCAYW Sbjct: 61 VVYEAAGFTWPAQIDVPHLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYW 120 Query: 121 LGTALSRLAGAGSAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLSQARVGA 180 LG ALSRLAGA +AGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKL+Q RVGA Sbjct: 121 LGIALSRLAGASTAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGA 180 Query: 181 LAIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVV 240 LAIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVV Sbjct: 181 LAIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVV 240 Query: 241 NLDDGMGQRLLPLLAERKLPVIGYAIADEQGGDTHGVPTLRASQLRSSHTGTAFHVDSPF 300 NLDD MGQRLLPLLAERK+PVIGYAIADEQGGD HGVPTLRASQLRSSHTGT FHVDSPF Sbjct: 241 NLDDDMGQRLLPLLAERKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVDSPF 300 Query: 301 GSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALLPAPGRMQQFGGPDVPLI 360 GSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAAL PAPGRMQQFGGPDVPLI Sbjct: 301 GSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFGGPDVPLI 360 Query: 361 VIDYAHTPDALDKTLSTLRQVATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLT 420 VIDYAHTPDALDKTLSTLRQ+ATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLT Sbjct: 361 VIDYAHTPDALDKTLSTLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLT 420 Query: 421 SDNPRTEDPNAIIEQIRAGMSRVEPTVLPDRAGAILWAIRHATKADVVLLAGKGHEPYQE 480 SDNPR+EDP AII+QIRAGMSRVEP VLPDRAGAILWAIRHATKADVVLLAGKGHE YQE Sbjct: 421 SDNPRSEDPQAIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQE 480 Query: 481 IAGKKLPFLDADHVALALAARSTMMGGA 508 IAGKKLPFLDADHVALALAARSTMMGGA Sbjct: 481 IAGKKLPFLDADHVALALAARSTMMGGA 508 >ref|YP_004754593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Collimonas fungivorans Ter331] gb|AEK63770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Collimonas fungivorans Ter331] Length = 511 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 336/510 (65%), Positives = 390/510 (76%), Gaps = 9/510 (1%) Query: 4 RVPSLQEILAWLRQASPS-AQLTSDSRRVAAGDVFFAYVGDA-DGRSYIADAVERGAAAV 61 ++ L EI WL +P+ A+L SDSR+V AGDVFFAY GDA DGR+YIA A+E GA+AV Sbjct: 5 KLQQLPEIQQWLDSVAPAGAELVSDSRKVKAGDVFFAYPGDAADGRAYIAQALENGASAV 64 Query: 62 LYEADGYSWPEQIDAPHLAVPDLKMRAGEIAAAWYGQPDQHMLTVAVTGTNGKTSCAYWL 121 LYE + ++W H AV LK+ +GEIA +Y Q D+ ML VAVTGTNGKTSC WL Sbjct: 65 LYEKEKFAWDTAWRVAHRAVSGLKLLSGEIAHGYYDQADKDMLVVAVTGTNGKTSCTQWL 124 Query: 122 GTALSRLAGAGSAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLSQARVGAL 181 G ALS L A GVIGTLG G ++ G+ F+ TG TTPDA+LLQ++L + + V AL Sbjct: 125 GHALSHLGQA--TGVIGTLGTGIYMQGERGEFEETGNTTPDALLLQQALSNMRRQGVAAL 182 Query: 182 AIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVVN 241 AIEASSIGL QGR+NGMHVD+AL TNFTRDHLD+HGD Q YE AKR LF WPGL+ AV+N Sbjct: 183 AIEASSIGLEQGRLNGMHVDIALFTNFTRDHLDYHGDEQHYEAAKRMLFDWPGLQQAVIN 242 Query: 242 LDDGMGQRLLPLLAERK--LPVIGYAIADEQGGDTHGVPTLRASQLRSSHTGTAFHVDSP 299 LDD MG RL+ L +++ +PVIGY + Q GV LRAS +R++ GTAFHVDSP Sbjct: 243 LDDAMGLRLIDHLRQKQPAIPVIGYTCEELQA--VPGVQVLRASAIRTNANGTAFHVDSP 300 Query: 300 FGSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALLPAPGRMQQFGGPDVPL 359 FGS QVKTQLVG+FNVSN LGI+GVLL +GVAWDA + A L+ PGRMQQFGG D PL Sbjct: 301 FGSAQVKTQLVGQFNVSNALGILGVLLAKGVAWDAALNAIELLVAVPGRMQQFGGHDAPL 360 Query: 360 IVIDYAHTPDALDKTLSTLRQVATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVL 419 IVIDYAHTPDALDKTL+TLRQVA QR GQLWCVFGCGGDRDPGKRPQMG +AE AD V++ Sbjct: 361 IVIDYAHTPDALDKTLNTLRQVAQQRNGQLWCVFGCGGDRDPGKRPQMGAVAELADHVIV 420 Query: 420 TSDNPRTEDPNAIIEQIRAGMSRVEPT-VLPDRAGAILWAIRHATKADVVLLAGKGHEPY 478 TSDNPR+E+P+ II QI AGM + L DRA AILWA+RHA KADVVLLAGKGHE Y Sbjct: 421 TSDNPRSEEPSLIIGQILAGMKAPQAAQALEDRAAAILWAVRHAAKADVVLLAGKGHETY 480 Query: 479 QEIAGKKLPFLDADHVALALAARSTMMGGA 508 QEI GKKLPFLDADH ALALAAR+TM GGA Sbjct: 481 QEIKGKKLPFLDADHTALALAARATMKGGA 510 >ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding enzyme; AltName: Full=Meso-diaminopimelate-adding enzyme; AltName: Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase; AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 508 Score = 600 bits (1548), Expect = e-169, Method: Composition-based stats. Identities = 317/507 (62%), Positives = 383/507 (75%), Gaps = 12/507 (2%) Query: 7 SLQEILAWLRQASPSAQLTSDSRRVAAGDVFFAYVGD-ADGRSYIADAVERGAAAVLYEA 65 +L IL WL +P A+L SDSRR+A GDVF AY GD ADGRSYIA+A+ERGA AV+YEA Sbjct: 8 ALASILDWLAANAPKAELASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEA 67 Query: 66 DGYSWPEQIDAPHLAVPDLKMRAGEIAAAWYGQPDQHMLTVAVTGTNGKTSCAYWLGTAL 125 G +W + D HLA+ DLK AGEIAAA+Y PD+ M TVA+TGTNGKTSCA WLG+AL Sbjct: 68 AGCTWDAEWDVAHLAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSAL 127 Query: 126 SRLAGAGSAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLSQARVGALAIEA 185 SRL VIGTLGVG F NG FDVTGYTTPDAVLLQRSL +S ALAIEA Sbjct: 128 SRLGQP--TAVIGTLGVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEA 185 Query: 186 SSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVVNLDDG 245 SSIGL QGR++GMH D+AL TNFTRDHLD+HGDM YE+AK LF WPGL+HAV+NLDD Sbjct: 186 SSIGLHQGRLSGMHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFDWPGLQHAVINLDDA 245 Query: 246 MGQRLLPLLAERK--LPVIGYAIADEQGGDTHGVPTLRASQLRSSHTGTAFHVDSPFGSG 303 MG RL+ L R+ + + GY ++D++ G+ LRA+ +RS+ +GT F ++S G+ Sbjct: 246 MGVRLVQRLQSRQADVGITGYTLSDKK---IDGIAVLRATDIRSNQSGTVFQLESSAGNT 302 Query: 304 QVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALLPAPGRMQQFGGPDVPLIVID 363 QVKTQLVG+FNVSNVLGI+G+LL +G+A V A AL PGRMQQ GG + PL+VID Sbjct: 303 QVKTQLVGQFNVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQLGGGEAPLVVID 362 Query: 364 YAHTPDALDKTLSTLRQVATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLTSDN 423 YAHTPDAL+KTL+TLR VA RGG+LWCVFGCGGDRDPGKRPQMG+++ AD +V+T+DN Sbjct: 363 YAHTPDALEKTLATLRSVANDRGGELWCVFGCGGDRDPGKRPQMGKVSMAADHIVVTTDN 422 Query: 424 PRTEDPNAIIEQIRAGMS--RVEPTVLPDRAGAILWAIRHATKADVVLLAGKGHEPYQEI 481 PR E+P II I AG++ + P ++ DRA AILWA RHA + DV+LLAGKGHE YQE+ Sbjct: 423 PRNEEPANIIGDIVAGITAPKNAPQIIEDRASAILWAGRHAARQDVILLAGKGHEAYQEV 482 Query: 482 AGKKLPFLDADHVALALAARSTMMGGA 508 G+KLPFLDADH ALAL+ R +M GA Sbjct: 483 KGRKLPFLDADHAALALSTR--VMQGA 507 >ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Herminiimonas arsenicoxydans] emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) [Herminiimonas arsenicoxydans] Length = 508 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 312/500 (62%), Positives = 377/500 (75%), Gaps = 10/500 (2%) Query: 7 SLQEILAWLRQASPSAQLTSDSRRVAAGDVFFAYVGD-ADGRSYIADAVERGAAAVLYEA 65 +L ILAWL+ A+P+A+L SDSR + GDVF AY GD ADGR+YI+DA+ERGA A+LY+A Sbjct: 8 ALTAILAWLQAAAPAAELASDSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDA 67 Query: 66 DGYSWPEQIDAPHLAVPDLKMRAGEIAAAWYGQPDQHMLTVAVTGTNGKTSCAYWLGTAL 125 G +W E+ + PHLA+ +L+ AG IAAA+YG PD M TVAVTGTNGKTSC+ WLG AL Sbjct: 68 AGCNWDEEWNVPHLAIDNLRACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNAL 127 Query: 126 SRLAGAGSAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLSQARVGALAIEA 185 SRL VIGTLGVG F +G+ F+VTGYTTPDAVLLQR L + A ALAIEA Sbjct: 128 SRLGQP--TAVIGTLGVGIFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEA 185 Query: 186 SSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVVNLDDG 245 SSIGL QGR+ G+H D+AL TNFTRDHLD+HGDM YE AK LF WPGL+HAVVNLDD Sbjct: 186 SSIGLHQGRLYGVHFDMALFTNFTRDHLDYHGDMAAYEAAKTMLFDWPGLRHAVVNLDDA 245 Query: 246 MGQRLLPLLAERK--LPVIGYAIADEQGGDTHGVPTLRASQLRSSHTGTAFHVDSPFGSG 303 +G RL+ L R+ + + GY + ++ D + L AS +RS+H GT+F + S FG Sbjct: 246 LGVRLVERLKRRQSGIGITGYTLTNQGVAD---IDLLSASDIRSTHAGTSFQLTSKFGVT 302 Query: 304 QVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALLPAPGRMQQFGGPDVPLIVID 363 VKTQLVG FNVSNVLGI+G+LL +G+A VVAA AL PGRMQQ GG + PL+VID Sbjct: 303 LVKTQLVGEFNVSNVLGIIGILLAKGIALSNVVAAIEALTSVPGRMQQLGGAEAPLVVID 362 Query: 364 YAHTPDALDKTLSTLRQVATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLTSDN 423 YAHTPDAL+KTL+TLR+VA +RGG LWCVFGCGGDRD GKRPQMG+ A AD +++TSDN Sbjct: 363 YAHTPDALEKTLATLREVANERGGALWCVFGCGGDRDAGKRPQMGKAAMAADHIIVTSDN 422 Query: 424 PRTEDPNAIIEQIRAGM--SRVEPTVLPDRAGAILWAIRHATKADVVLLAGKGHEPYQEI 481 PR E+P +II QI AGM ++ P ++ DRA AIL+A RHA K DV+LLAGKGHE YQEI Sbjct: 423 PRHEEPASIIAQIVAGMDVAKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKGHEAYQEI 482 Query: 482 AGKKLPFLDADHVALALAAR 501 G+K PFLDADH ALAL+AR Sbjct: 483 KGRKQPFLDADHAALALSAR 502 >ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase [Oxalobacter formigenes HOxBLS] Length = 504 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 282/496 (56%), Positives = 351/496 (70%), Gaps = 11/496 (2%) Query: 11 ILAWLRQASPSAQLTSDSRRVAA--GDVFFAYVGD-ADGRSYIADAVERGAAAVLYEADG 67 ++ WLR P+ QL SDSR + A VFFAY GD ADGR YI+ A+ GA AV++E +G Sbjct: 11 VVRWLRAVCPNGQLFSDSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEG 70 Query: 68 YSWPEQIDAPHLAVPDLKMRAGEIAAAWYGQPDQHMLTVAVTGTNGKTSCAYWLGTALSR 127 + W + + PHL V LK A +AAA+Y P Q M +AVTGTNGKTSC WLG +LS Sbjct: 71 FDWNPEWNVPHLGVMGLKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSA 130 Query: 128 LAGAGSAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLSQARVGALAIEASS 187 L VIGTLGV FVNG+ + TGYTTPD V LQR L KL + V +A+EASS Sbjct: 131 LGK--KTAVIGTLGVTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASS 188 Query: 188 IGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKHAVVNLDDGMG 247 IG+ QGR+NG+ +DV L TNFTRDHLD+H DM +Y+ AKRKLF WPGLKHAV+NLDD MG Sbjct: 189 IGIDQGRLNGIPIDVGLFTNFTRDHLDYHHDMASYKAAKRKLFDWPGLKHAVLNLDDPMG 248 Query: 248 QRLLPLLAERKLPVIGYAIADEQGGDTHGVPTLRASQLRSSHTGTAFHVDSPFGSGQVKT 307 + L L R + + GY + + DT +P L+A +R +G F +DS GS +++T Sbjct: 249 RELATALKTR-ISLTGYTL---ENADT-AIPVLKACDIRHRTSGIEFSIDSFSGSARIRT 303 Query: 308 QLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALLPAPGRMQQFGGPDVPLIVIDYAHT 367 +L+GRFN SNVLG++GVLL G+ WD V LLP GRMQQ GG + PL+VID+AHT Sbjct: 304 RLIGRFNASNVLGVLGVLLAAGIHWDDAVRTLGDLLPPAGRMQQMGGKNAPLVVIDFAHT 363 Query: 368 PDALDKTLSTLRQVATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQADQVVLTSDNPRTE 427 PDA++K L+TLR VA +R G+LWCVFGCGGDRD GKRPQMG ++E AD V++TSDNPR+E Sbjct: 364 PDAMEKGLATLRHVANERNGKLWCVFGCGGDRDQGKRPQMGSVSETADFVIVTSDNPRSE 423 Query: 428 DPNAIIEQIRAGMSRVEPTVLPDRAGAILWAIRHATKADVVLLAGKGHEPYQEIAGKKLP 487 DP I++QI +GM + EP V DRA AIL A+R A++ DV+ LAGKGHE YQEI G KLP Sbjct: 424 DPKEIMKQIISGMEK-EPQVYEDRAMAILQAVRQASQNDVIFLAGKGHETYQEIKGVKLP 482 Query: 488 FLDADHVALALAARST 503 F DADHVALALA+R T Sbjct: 483 FADADHVALALASRVT 498