BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0156.p (486 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D... 808 0.0 emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan... 519 e-145 ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-di... 507 e-141 ref|YP_004754592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-di... 497 e-138 ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-dia... 475 e-132 >ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase [Herbaspirillum seropedicae SmR1] gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein [Herbaspirillum seropedicae SmR1] Length = 486 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 454/486 (93%), Positives = 472/486 (97%) Query: 1 MMRFDFRQLLEWIRTAEEAASAHTVPGVVNAPAGVLELNDVVTDSRAVKPGNVFVALRGE 60 MMRFDFRQ+LEW+RTAE AASAHTVPGVVNAPAG+L LNDVVTDSRAVKPGNVFVALRGE Sbjct: 1 MMRFDFRQMLEWLRTAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGE 60 Query: 61 RFDAHDFLDAVVAQGAAAVVVDRVPPGLSVPAIVVPDIRAALGQIAHGWRVQRQIPVIGV 120 RFDAHDFLDAV QGAAAVVV+RVPPGL++PAIVVPD RAALGQIAHGWR+QRQIPVIGV Sbjct: 61 RFDAHDFLDAVADQGAAAVVVERVPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGV 120 Query: 121 TGSNGKTTVKEMIAAILAAAFGEDGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMN 180 TGSNGKTTVKEMIA ILAAAFGE+GYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMN Sbjct: 121 TGSNGKTTVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMN 180 Query: 181 HPGEIAVLSRIAAPTLGLVNNAQREHQEFMASVEAVARENGAVIRHLPADGVAVFPADDD 240 HPGEIAVLSRIAAPTLGLVNNAQREHQEFMA+VEAVARENGAVIRHLPADGVAVFPADDD Sbjct: 181 HPGEIAVLSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDD 240 Query: 241 FTALWREEAGARRVLTFGLNAQADVSASYQATAFGSTLQVTVKGLAVPPAQFKVELAAVG 300 FT LWREEAGARRVL+FGL+AQADVSASYQATAFGSTLQV VKGLAVPPAQFKVELAAVG Sbjct: 241 FTPLWREEAGARRVLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVG 300 Query: 301 EHNVRNALAAAACALGAGIPVDAVVRGLQSFAPVNGRLQRKQARSGALVIDDTYNANPDS 360 EHNVRNALAAAACALGAGI ++AVVRGL+SFAPVNGRLQRK+ARSGALVIDDTYNANPDS Sbjct: 301 EHNVRNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEARSGALVIDDTYNANPDS 360 Query: 361 VRAAIDVLASIAGPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVT 420 VRAAIDVLA+IAGPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVT Sbjct: 361 VRAAIDVLAAIAGPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVT 420 Query: 421 SYGPALQNVAQAMHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVNVESLTQ 480 +YG Q VAQA+HFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVNVES TQ Sbjct: 421 AYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVNVESPTQ 480 Query: 481 HQQETH 486 HQQETH Sbjct: 481 HQQETH 486 >emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Herminiimonas arsenicoxydans] Length = 455 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 298/461 (64%), Positives = 342/461 (74%), Gaps = 17/461 (3%) Query: 27 GVVNAPA-GVLELNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVVAQGAAAVVVDRVP 85 + NA A G + V TDSR V GN+FVALRGERFDAH FL V + AAVV +++P Sbjct: 11 AIKNATATGDAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKVAAVVAEKIP 70 Query: 86 PGLSVPAIVVPDIRAALGQIAHGWRVQRQIPVIGVTGSNGKTTVKEMIAAILAAAFGEDG 145 GL+VPA++VPD R ALG++A WR Q +P+IGVTGSNGKTTVKEMIAAIL AAFG D Sbjct: 71 AGLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDN 130 Query: 146 YLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTLGLVNNAQRE 205 YL TRGNFNN+IGVPLTL RL A +AAVIE+GMNHPGEIAVLS IA PT+GLVNNAQRE Sbjct: 131 YLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQRE 190 Query: 206 HQEFMASVEAVARENGAVIRHLPADGVAVFPADDDFTALWREEAGARRVLTFGLNAQADV 265 HQEFM SVEAVA+ENGAV+ LPADGVAVFPADD FT LWR A R+ LTFG +A ADV Sbjct: 191 HQEFMESVEAVAQENGAVLASLPADGVAVFPADDAFTPLWRSYAAQRKTLTFGFSADADV 250 Query: 266 SASYQATAFGSTLQVTVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGIPVDAVV 325 +Y A FG+ + VT +F + L+A G HNVRNALAA AC L GI +A+V Sbjct: 251 RCTYAANVFGNDMSVTAGN-----QKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIV 305 Query: 326 RGLQSFAPVNGRLQRKQARSGALVIDDTYNANPDSVRAAIDVLASIAGPRVLVLGDMGEV 385 RGLQ+FAPV+GRLQRK A SGALVIDDTYNANPDSVRAAIDVLA +A PR+LVLGDMGEV Sbjct: 306 RGLQAFAPVSGRLQRKLAASGALVIDDTYNANPDSVRAAIDVLAQMASPRILVLGDMGEV 365 Query: 386 GDQGPQFHAEIGAYARSRGIPLFFGLGELTKHAVTSYGPALQNVAQAMHFDDIAALNAAV 445 G+ G Q+H EIGAYAR+ GI LGEL +H V+++G A A H+D + ALN A+ Sbjct: 366 GNDGRQYHEEIGAYARANGIEHVLALGELARHTVSAFG------AGAQHYDSVEALNDAL 419 Query: 446 EQAAPQGATVLVKGSRFMKMERVVQHLVNVESLTQHQQETH 486 ATVLVKGSRFMKMERVVQHL L Q QE H Sbjct: 420 AAIFAADATVLVKGSRFMKMERVVQHL-----LGQQTQEAH 455 >ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase [Janthinobacterium sp. Marseille] Length = 455 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 293/449 (65%), Positives = 342/449 (76%), Gaps = 16/449 (3%) Query: 38 LNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVVAQGAAAVVVDRVPPGLSVPAIVVPD 97 + V TDSR V GN+FVALRGERFDAHDFL V + AA+V + VP GL+VPA++V D Sbjct: 23 FDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVAETVPDGLTVPALIVQD 82 Query: 98 IRAALGQIAHGWRVQRQIPVIGVTGSNGKTTVKEMIAAILAAAFGEDGYLGTRGNFNNEI 157 R ALGQIAH WR Q ++P+IGVTGSNGKTTVKEMIAAIL AA G D YL TRGNFNN+I Sbjct: 83 TRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMIAAILEAACGVDNYLATRGNFNNDI 142 Query: 158 GVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTLGLVNNAQREHQEFMASVEAVA 217 GVPLTL RL+ +AAVIE+GMNHPGEIAVLS IA PT+GLVNNAQREHQEFMASVEAVA Sbjct: 143 GVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIAEPTVGLVNNAQREHQEFMASVEAVA 202 Query: 218 RENGAVIRHLPADGVAVFPADDDFTALWREEAGARRVLTFGLNAQADVSASYQATAFGST 277 +ENGAV+ LPADG+AVFPADD+FT LWR+ A R+VLTFG + ADV SY A AFGS Sbjct: 203 QENGAVLAGLPADGIAVFPADDEFTPLWRQLAAQRKVLTFGFSDDADVRCSYSANAFGSD 262 Query: 278 LQVTVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGIPVDAVVRGLQSFAPVNGR 337 ++++ QF V L+A G HNVRNALAA ACAL GI DA+ RGLQ+FAPV+GR Sbjct: 263 MEISAG-----RQQFTVALSAAGVHNVRNALAAIACALAIGIATDAIARGLQAFAPVSGR 317 Query: 338 LQRKQARSGALVIDDTYNANPDSVRAAIDVLASIAGPRVLVLGDMGEVGDQGPQFHAEIG 397 LQRK A +GALVIDDTYNANPDSVRAAIDVLA ++ PR+LVLG+MGEVG+ G Q+H EIG Sbjct: 318 LQRKLAANGALVIDDTYNANPDSVRAAIDVLAQMSAPRILVLGEMGEVGNDGRQYHEEIG 377 Query: 398 AYARSRGIPLFFGLGELTKHAVTSYGPALQNVAQAMHFDDIAALNAAVEQAAPQGATVLV 457 AYAR++ I LG+LT++A +++G A A H+D + LN A+ ATVLV Sbjct: 378 AYARAKSIEYVLTLGDLTRYAASAFG------AGANHYDSVEELNDALAGIFTADATVLV 431 Query: 458 KGSRFMKMERVVQHLVNVESLTQHQQETH 486 KGSRFMKMERVVQHL L Q QE H Sbjct: 432 KGSRFMKMERVVQHL-----LGQQTQEAH 455 >ref|YP_004754592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Collimonas fungivorans Ter331] gb|AEK63769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D- alanyl ligase [Collimonas fungivorans Ter331] Length = 472 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 298/454 (65%), Positives = 336/454 (74%), Gaps = 17/454 (3%) Query: 38 LNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVVAQGAAAVVVDRVPP---GLSVPAIV 94 +N + TDSRAV PG +FVALRGERFDAHDFLD V+AQG AAVVV+R P L+VPA+V Sbjct: 26 VNGLCTDSRAVTPGCLFVALRGERFDAHDFLDQVIAQGVAAVVVERTPATLTALAVPALV 85 Query: 95 VPDIRAALGQIAHGWRVQRQIPVIGVTGSNGKTTVKEMIAAILAAAFGEDGYLGTRGNFN 154 V D R ALG I WR Q +P+I VTGSNGKTTVKEMIAAIL AAFG D L TRGNFN Sbjct: 86 VNDTRVALGTIGQRWRQQFTLPLIAVTGSNGKTTVKEMIAAILVAAFGVDKSLATRGNFN 145 Query: 155 NEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTLGLVNNAQREHQEFMASVE 214 NEIGVPLTL RL A HQAAVIE+GMNHPGEIA+L+ +A PT+ LVNNAQREHQEFMASV Sbjct: 146 NEIGVPLTLLRLGAGHQAAVIELGMNHPGEIALLTALAEPTVALVNNAQREHQEFMASVA 205 Query: 215 AVARENGAVIRHLPADGVAVFPADDDFTALWREEAGARR-VLTFGLNAQADVSASYQATA 273 AVA ENG+VIR LPA G+AVFPADD FT LWR A + ++FGL A ADVS SY A Sbjct: 206 AVAEENGSVIRGLPASGIAVFPADDPFTGLWRGYAADKAGSISFGLTADADVSCSYTGAA 265 Query: 274 --FGSTLQVTVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGIPVDAVVRGLQSF 331 FGS L VT A P F ++LAA GEHNVRNALAA AC L GI V A+ RGL++F Sbjct: 266 HGFGSDLIVTF-ATAGGPQIFALQLAAAGEHNVRNALAAIACTLAIGIDVAAIKRGLETF 324 Query: 332 APVNGRLQRKQAR----SGALVIDDTYNANPDSVRAAIDVLASIAGPRVLVLGDMGEVGD 387 APV+GRLQRK A +GALVIDDTYNANPDSVRAAIDVLA A PR+LVLGDMGEVG+ Sbjct: 325 APVSGRLQRKLATAAGCAGALVIDDTYNANPDSVRAAIDVLAQSAAPRLLVLGDMGEVGN 384 Query: 388 QGPQFHAEIGAYARSRGIPLFFGLGELTKHAVTSYGPALQNVAQAMHFDDIAALNAAVEQ 447 +G +FH EIGAYA+ RGI F LG+L A ++GP QA HF+DIAAL AA++ Sbjct: 385 EGREFHQEIGAYAQQRGITQLFTLGDLAADASAAFGP------QAQHFNDIAALLAALDA 438 Query: 448 AAPQGATVLVKGSRFMKMERVVQHLVNVESLTQH 481 TVL+KGSRFMKMER VQHL S H Sbjct: 439 TMTPDTTVLIKGSRFMKMERAVQHLAGTTSEGTH 472 >ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D- alanyl ligase [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 266/414 (64%), Positives = 312/414 (75%), Gaps = 14/414 (3%) Query: 34 GVLELNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVVAQGAAAVVVDRVPPGLSVPAI 93 G + + TDSR G++FVALRGE+FDAH F+D + A+G AAVVV+RVP G+ +PA+ Sbjct: 19 GDASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMDGLAARGVAAVVVERVPKGMEIPAL 78 Query: 94 VVPDIRAALGQIAHGWRVQRQIPVIGVTGSNGKTTVKEMIAAILAAAFGEDGYLGTRGNF 153 +VPD R ALG IA WR Q +PVIGVTGSNGKTTVKEM+AAIL A G D +L TRGNF Sbjct: 79 IVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHFLATRGNF 138 Query: 154 NNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAVLSRIAAPTLGLVNNAQREHQEFMASV 213 NN+IGVPLT+ RL A +AAVIE+GMNHPGEIA LS IA PTLGLVNNAQREHQEFM SV Sbjct: 139 NNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTLGLVNNAQREHQEFMVSV 198 Query: 214 EAVARENGAVIRHLPADGVAVFPADDDFTALWREEA---GARRVLTFGLNAQADVSASYQ 270 EAVA+ENGAVI LPA+G+AVFPADD + LWR A G R+V+TFG + ADVS S++ Sbjct: 199 EAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAIGQRKVMTFGFSDDADVSCSWK 258 Query: 271 ATAFGSTLQVTVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGIPVDAVVRGLQS 330 A FGS LQV F V++ A G+HNVRNALAA ACALG GI +DA+VRGL + Sbjct: 259 ADGFGSELQVRAG-----ERTFTVKVDAAGQHNVRNALAAIACALGIGIGIDAIVRGLAA 313 Query: 331 FAPVNGRLQRKQARSGALVIDDTYNANPDSVRAAIDVLASIAGPRVLVLGDMGEVGDQGP 390 FAPVNGRLQRK A SGA VIDDTYNANPDSVRAAI+VLA PRVLVLGDMGEVG+ G Sbjct: 314 FAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEVLAQAPSPRVLVLGDMGEVGNDGR 373 Query: 391 QFHAEIGAYARSRGIPLFFGLGELTKHAVTSYGPALQNVAQAMHFDDIAALNAA 444 Q+H E+GAYAR RGI F LG+L +H+ +++G A A HF+DI AL A Sbjct: 374 QYHEEVGAYARGRGIQHLFTLGQLAQHSGSAFG------AHARHFNDIEALPAG 421