BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0151.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbas... 633 e-179 ref|YP_004754586.1| D-alanine-D-alanine ligase B [Collimonas fun... 510 e-143 ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacteri... 487 e-136 ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas a... 477 e-132 ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae ... 469 e-130 >ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 633 bits (1633), Expect = e-179, Method: Composition-based stats. Identities = 306/333 (91%), Positives = 319/333 (95%) Query: 1 MISQDQIKAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQA 60 MISQDQIKAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQA Sbjct: 1 MISQDQIKAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQA 60 Query: 61 EKFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLTTP 120 E+FDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVM+SSIAMDK+MTKRIWLSHGL TP Sbjct: 61 EQFDRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTP 120 Query: 121 RFLSLDAKATTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDMCARYDS 180 RFL+LDA+ATTREQLR+VPD LGLPLMLKAPHEGSTIGIAKVNGYSDMQ FD+CARYD Sbjct: 121 RFLTLDAQATTREQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGFDLCARYDK 180 Query: 181 VVLAEEFIRGRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFSDDTKYYCPAPLDE 240 VVLAEEFIRGRELTVPVLG G ARALP+IEI AP GNYDYQNKYF+DDTKY CPAPLDE Sbjct: 181 VVLAEEFIRGRELTVPVLGTGSAARALPVIEIRAPEGNYDYQNKYFTDDTKYLCPAPLDE 240 Query: 241 ELTHHIQDLAVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAK 300 ELT H+Q+LAV+AFNALGCRGWSRVDFMLRE DGKAEPYL+EINTSPGMTGHSLVPMAAK Sbjct: 241 ELTRHLQNLAVQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAK 300 Query: 301 AVGMSYEDLCCEILQMAALDMRPSKDWTPQAGQ 333 AVGMSYEDLCCEILQMAALDM PSKDWTPQAGQ Sbjct: 301 AVGMSYEDLCCEILQMAALDMTPSKDWTPQAGQ 333 >ref|YP_004754586.1| D-alanine-D-alanine ligase B [Collimonas fungivorans Ter331] gb|AEK63763.1| D-alanine-D-alanine ligase B, affects cell division [Collimonas fungivorans Ter331] Length = 336 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 247/320 (77%), Positives = 275/320 (85%), Gaps = 2/320 (0%) Query: 10 FGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEKFDRVFIA 69 FG+VGVLFGGRSAEREVS+MSGNGVL+AL+S GVDAH FD ERSL EL AEKFDRVFIA Sbjct: 18 FGKVGVLFGGRSAEREVSIMSGNGVLKALKSHGVDAHLFDTRERSLAELAAEKFDRVFIA 77 Query: 70 LHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLTTPRFLSLDAKA 129 LHGRYGEDGTLQGALEQ+G+PYTGPGVMAS+I MDK+MTKRIW S GL TPRF+ LD+ + Sbjct: 78 LHGRYGEDGTLQGALEQLGIPYTGPGVMASAIGMDKVMTKRIWQSMGLPTPRFIVLDSHS 137 Query: 130 TTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDMCARYDSVVLAEEFIR 189 TRE+LR VPD LGLPLMLKAPHEGSTIGI+KV GYSDM F +CA++D VLAEEF+ Sbjct: 138 ATREELRQVPDVLGLPLMLKAPHEGSTIGISKVVGYSDMSEGFALCAKFDEKVLAEEFVA 197 Query: 190 GRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFSDDTKYYCPAPLDEELTHHIQDL 249 GRELTVPVLG GR AR LPI+EI AP GNYDYQ+KYF+DDTKY CPAPLDE LT IQ L Sbjct: 198 GRELTVPVLGAGRRARTLPIVEIRAPEGNYDYQHKYFTDDTKYLCPAPLDEALTQRIQAL 257 Query: 250 AVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAKAVGMSYEDL 309 AV+AFNALGC GW+RVDFMLR D EPYL+EINTSPGMT HSLVPMAAKA G+SYEDL Sbjct: 258 AVQAFNALGCEGWARVDFMLRSSDN--EPYLLEINTSPGMTSHSLVPMAAKADGVSYEDL 315 Query: 310 CCEILQMAALDMRPSKDWTP 329 C EIL+ A+LD++PS DW P Sbjct: 316 CVEILKSASLDLKPSADWKP 335 >ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille] sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille] Length = 320 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 228/316 (72%), Positives = 269/316 (85%), Gaps = 2/316 (0%) Query: 8 KAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEKFDRVF 67 K FG+VGVLFGGRSAEREVS+MSG GVL AL SKG+DAHPFDPAERSL EL AEKFDRVF Sbjct: 3 KEFGKVGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLAELAAEKFDRVF 62 Query: 68 IALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLTTPRFLSLDA 127 IALHGR+GEDG+LQGALEQ+G+PYTGPGVMAS+IAMDK++TKR+ LSHG+ TP+F +L+ Sbjct: 63 IALHGRFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEV 122 Query: 128 KATTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDMCARYDSVVLAEEF 187 +ATT EQL+ + E G+PLMLKAPHEGSTIGIAKV MQ FD+CA+YD VVL E+F Sbjct: 123 EATTAEQLQAIAAEFGMPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYDDVVLVEQF 182 Query: 188 IRGRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFSDDTKYYCPAPLDEELTHHIQ 247 ++GRELTVPVLG GR+ARALPI+EI AP GNYDY++KYFSDDT+Y CPAP D T +Q Sbjct: 183 VKGRELTVPVLGSGRNARALPIVEIIAPQGNYDYEHKYFSDDTQYLCPAPFDAAFTKRVQ 242 Query: 248 DLAVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAKAVGMSYE 307 LAV AFNA+GC GW+RVDF++RE D EP+L+EINTSPGMTGHSLVPM+AK G +YE Sbjct: 243 ALAVSAFNAVGCTGWARVDFLVRESDN--EPFLLEINTSPGMTGHSLVPMSAKVAGTAYE 300 Query: 308 DLCCEILQMAALDMRP 323 DLC EIL+MA L ++P Sbjct: 301 DLCVEILRMAKLGLKP 316 >ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans] sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName: Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine synthetase emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B) (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans] Length = 334 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 228/321 (71%), Positives = 266/321 (82%), Gaps = 2/321 (0%) Query: 4 QDQIKAFGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEKF 63 Q+ FG+VGVLFGGRSAEREVS+MSG GVL AL+SKGVDAH FDPAERSL EL AEKF Sbjct: 6 QNLKAEFGKVGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLAELAAEKF 65 Query: 64 DRVFIALHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLTTPRFL 123 DRVFIALHG YGEDGTLQGALEQ+G+PYTGPGVMAS+I+MDK+MTKR+ LSHG+ TPRF Sbjct: 66 DRVFIALHGSYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFT 125 Query: 124 SLDAKATTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDMCARYDSVVL 183 LDA+ T+ QL+ V E GLPLMLKAPHEGSTIGIAKV MQ FD+CA+Y++VVL Sbjct: 126 VLDAETTSAAQLQSVAAEFGLPLMLKAPHEGSTIGIAKVETAEGMQAGFDLCAKYEAVVL 185 Query: 184 AEEFIRGRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFSDDTKYYCPAPLDEELT 243 E+F++GRELTVPV+G GR+ARALPI+EI AP GNYDY++KYFS+DT+Y CPAP DE T Sbjct: 186 VEQFVKGRELTVPVIGSGRNARALPIVEIRAPQGNYDYEHKYFSNDTEYLCPAPFDEAFT 245 Query: 244 HHIQDLAVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAKAVG 303 +Q LAV AFNA+GC GWSRVDFM+R D EP+L+EINTSPGMT HSLVPM+AK G Sbjct: 246 KRVQALAVSAFNAVGCTGWSRVDFMVRASDN--EPFLLEINTSPGMTSHSLVPMSAKVAG 303 Query: 304 MSYEDLCCEILQMAALDMRPS 324 YEDLC EIL+ A +++PS Sbjct: 304 TGYEDLCIEILRSAKTELKPS 324 >ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480] Length = 322 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 231/310 (74%), Positives = 261/310 (84%), Gaps = 3/310 (0%) Query: 10 FGRVGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEKFDRVFIA 69 FG+VGVL GGRSAEREVS+MSGNGVL ALRSKG+DAHPFDPAERSL EL E+FDRVFIA Sbjct: 8 FGKVGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLAELATEQFDRVFIA 67 Query: 70 LHGRYGEDGTLQGALEQMGLPYTGPGVMASSIAMDKIMTKRIWLSHGLTTPRFLSLDAKA 129 LHGR+GEDGTLQGALE +G+PYTG GVMAS+I +DK+MTKRIWLSH L TPRFL LDA+ Sbjct: 68 LHGRFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPTPRFLVLDAQ- 126 Query: 130 TTREQLRVVPDELGLPLMLKAPHEGSTIGIAKVNGYSDMQVSFDMCARYDSVVLAEEFIR 189 T + L VP+ELGLPLMLKAPHEGSTIGIAKV +DM F +CA+YDSVVLAEEFI Sbjct: 127 TPADVLDEVPEELGLPLMLKAPHEGSTIGIAKVIVDADMHTGFALCAQYDSVVLAEEFIS 186 Query: 190 GRELTVPVLGKGRDARALPIIEICAPGGNYDYQNKYFSDDTKYYCPAPLDEELTHHIQDL 249 GRE+T+PVLG G ARALPI+EI AP GNYDY++KYFSDDT Y CPAPL +E+T +QD+ Sbjct: 187 GREITIPVLGSGHGARALPIVEIRAPEGNYDYEHKYFSDDTVYLCPAPLADEVTATLQDI 246 Query: 250 AVRAFNALGCRGWSRVDFMLREGDGKAEPYLIEINTSPGMTGHSLVPMAAKAVGMSYEDL 309 AVRAFNA+GC GW RVD MLR GD P+L+E+NTSPGMT HSLVPMAAKA G+SYEDL Sbjct: 247 AVRAFNAVGCTGWGRVDIMLRAGDDA--PFLLEVNTSPGMTSHSLVPMAAKAAGISYEDL 304 Query: 310 CCEILQMAAL 319 C EIL A L Sbjct: 305 CVEILSTARL 314