BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0142.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773781.1| transmembrane protein [Herbaspirillum serope... 461 e-128 ref|YP_003442413.1| hypothetical protein Alvin_0422 [Allochromat... 144 2e-32 ref|ZP_08772869.1| Protein of unknown function DUF2272 [Thiocaps... 141 9e-32 ref|YP_113227.1| putative lipoprotein [Methylococcus capsulatus ... 134 2e-29 ref|ZP_08821932.1| Protein of unknown function DUF2272 [Thiorhod... 134 2e-29 >ref|YP_003773781.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61873.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 275 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 246/275 (89%), Positives = 257/275 (93%), Gaps = 5/275 (1%) Query: 1 MCLAKMFRASRLSFTATAIA-----TAVLLAGCASSPLPQWRDSGNPGYAPVTPSIPVTN 55 M LA + RA LSF+++ +A TAVLLAGCASSPLPQWRDS N GYAPVTPSIPVTN Sbjct: 1 MSLATLVRALPLSFSSSRLACVAAATAVLLAGCASSPLPQWRDSDNAGYAPVTPSIPVTN 60 Query: 56 TGVPAVAISTAAPTRAALVETAKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEGEAVQRVA 115 T VPAVAISTA PTRAALV+ AKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEGEAVQRVA Sbjct: 61 TAVPAVAISTAPPTRAALVDAAKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEGEAVQRVA 120 Query: 116 EYWHAVGKNLTGADCQQAWSAAFISWLMVSTNVPPQDFAPNETHFNYLSFLKDRQSRPSP 175 EYWHAVGKNLTGADCQQAWSAAFISWLMV+TNVPPQDFAPNETHFNYLSFLKDR+SRPSP Sbjct: 121 EYWHAVGKNLTGADCQQAWSAAFISWLMVTTNVPPQDFAPNETHFNYLSFLKDRESRPSP 180 Query: 176 QFVLRPAESEPIAPGDLICAPRGNNNITSIDEIRPGLAGHCDLVVEVHADDGWAGVIGGN 235 QF+LRPA+SEPIA GDLICAPRGNNNITSIDEIRPGLAGHCD+VVEVHADDGWAGVIGGN Sbjct: 181 QFLLRPADSEPIAAGDLICAPRGNNNITSIDEIRPGLAGHCDVVVEVHADDGWAGVIGGN 240 Query: 236 VFNSVSESLIPVDEQGRAQPIAARPWLVVVKNLLP 270 VFNSVSESLIPVD QGRAQPIAARPWLVVVKNLLP Sbjct: 241 VFNSVSESLIPVDGQGRAQPIAARPWLVVVKNLLP 275 >ref|YP_003442413.1| hypothetical protein Alvin_0422 [Allochromatium vinosum DSM 180] gb|ADC61381.1| Protein of unknown function DUF2272 [Allochromatium vinosum DSM 180] Length = 272 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 100/261 (38%), Positives = 136/261 (52%), Gaps = 25/261 (9%) Query: 19 IATAVLLAGCASSPL---PQWRDSGNPGYAPVTPSIPVTNTGVPAVAISTAAPTRAALVE 75 + ++ L CA+ P P+ R GY TP P PA+ + A++ Sbjct: 27 LVASLALLSCAAPPESVGPEGRTGTWSGYPIGTPPAPN-----PAL--------KRAIIA 73 Query: 76 TAKAEWDFFGNQQIDMRHEPFSAPRLGLLEDEG-EAVQRVAEYWHAVGKN-LTGADCQQA 133 A+ EW +FG Q+I + S P +G ED+G RV YW +VG++ LTG DCQ+ Sbjct: 74 RAEQEWAYFGRQEIVFKGAVESIPLVGDWEDDGARQSNRVNVYWRSVGESRLTGMDCQKP 133 Query: 134 WSAAFISWLMVSTNVPPQDFAPNETHFNYLSFLKDRQSRPSPQFVLRPAESEPIAPGDLI 193 WSAAFISW+M + VP F P H+ YL+ L + S P FV R + PGDLI Sbjct: 134 WSAAFISWIMRNAGVPTHQFRPAIAHWVYLADLIESASLPGRYFVPRRLQDYSPEPGDLI 193 Query: 194 CAPRGNNNITSID-EIRP----GLAGHCDLVVEVHADDGWAGVIGGNVFNSVSESLIPVD 248 CA R + + D +R GL HCDLV H VIGGNV NSVS+ + +D Sbjct: 194 CAYRQPSRVIMTDGAVRAGTLTGLRAHCDLVTAKHGRT--LEVIGGNVRNSVSKVRLELD 251 Query: 249 EQGRAQPIAARPWLVVVKNLL 269 +GR QPI RPW ++++N L Sbjct: 252 GRGRLQPIPRRPWFLILQNRL 272 >ref|ZP_08772869.1| Protein of unknown function DUF2272 [Thiocapsa marina 5811] gb|EGV16114.1| Protein of unknown function DUF2272 [Thiocapsa marina 5811] Length = 264 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 40 GNPGYAPVTPSIPVTNTGVPAVAISTAAP-TRAALVETAKAEWDFFGNQQIDMRHEPFSA 98 G PG P P T G P + P + A+++ A EW+ F Q + + S Sbjct: 32 GAPG--PRPGEAPGTWAGRPIGRAPSPNPGLKQAMIQRATREWEQFDRQVVVFKGNEESI 89 Query: 99 PRLGLLEDEGEAVQRVAEYWHAVGK-NLTGADCQQAWSAAFISWLMVSTNVPPQDFAPNE 157 P +G ED+ V RV YW AV K L G DC+Q WSAAFISW+M S VP F P Sbjct: 90 PHVGAWEDDYTHVSRVNLYWRAVNKPTLDGLDCRQPWSAAFISWVMQSAGVPTSQFRPAS 149 Query: 158 THFNYLSFLKDRQSRPSPQFVLRPAESEPIAPGDLICAPRGNNNITSIDE-----IRPGL 212 H+ YLS + + S P FV R + PGDL+CA RG + +D + G Sbjct: 150 AHWVYLSSMVEEASYPGRYFVPRRIQDYSPEPGDLVCAGRGRTPLRPVDGYTSAWMLQGA 209 Query: 213 AGHCDLVVEVHADDGWAGVIGGNVFNSVSESLIPVDEQGRAQPIAARPWLVVVKNLL 269 HCDLVV + VIGGNV NSVS+S++ +D++GR +P+ RPW +V++N L Sbjct: 210 ETHCDLVVGRNGQT--LDVIGGNVRNSVSKSVLELDDRGRLKPVTRRPWFLVMENRL 264 >ref|YP_113227.1| putative lipoprotein [Methylococcus capsulatus str. Bath] gb|AAU93137.1| putative lipoprotein [Methylococcus capsulatus str. Bath] Length = 268 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 129/262 (49%), Gaps = 27/262 (10%) Query: 20 ATAVLLAGCASSPLPQWRDSGNPGYAPVTP---SIPVTNTGVPAVAISTAAPTRAALVET 76 A + LAGC+ + AP P + PV + PA T + + ++ Sbjct: 22 ALCIALAGCSGAK-----------KAPTQPEPAAGPVASAEKPAAREPTLSAIKRRILAL 70 Query: 77 AKAEWDFFGNQQIDMRHEPFSAPRLGLLEDE-GEAVQRVAEYWHAVGK-NLTGADCQQAW 134 A AEW+FFG+Q++ S P +G EDE +QR++ YW AV K L+G +C Q W Sbjct: 71 ANAEWEFFGSQRVVYDGGEESIPHVGYWEDEDAPHIQRISRYWQAVNKPGLSGLNCSQPW 130 Query: 135 SAAFISWLMVSTNVPPQDFAPNETHFNYLSFLKDRQSRPSPQFVLRPAESEPIAPGDLIC 194 SAAF+SW+M VP F P H+ YLS + + P FV + PGDLIC Sbjct: 131 SAAFVSWVMEMAGVPESQFPPASAHWVYLSQIIRKSDGPYSSFVPHAIKEYSPRPGDLIC 190 Query: 195 APRGNNNITSIDEIRP-------GLAGHCDLVVEVHADDGWAGVIGGNVFNSVSESLIPV 247 A R + S+ RP HCD+VV+ + G IGGNV NSVS S + + Sbjct: 191 ASRERYGLPSV--TRPLETYMLEDTKLHCDIVVQ--RNSGSVEAIGGNVRNSVSRSTVAL 246 Query: 248 DEQGRAQPIAARPWLVVVKNLL 269 ++ G P RPW +V++N L Sbjct: 247 NKDGMLVPTRQRPWFLVLENRL 268 >ref|ZP_08821932.1| Protein of unknown function DUF2272 [Thiorhodococcus drewsii AZ1] gb|EGV33066.1| Protein of unknown function DUF2272 [Thiorhodococcus drewsii AZ1] Length = 263 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 40 GNPGYAPVTPSIPVTNTGVPAVAISTAAPTRAALVETAKAEWDFFGNQQIDMRHEPFSAP 99 G G AP+ P+ G P S R +++ A EW++FG Q I + + S P Sbjct: 35 GGSGTAPLWAGRPI---GAPP---SPNPRLRQRIIDRALGEWNYFGRQTIVFQGDDESMP 88 Query: 100 RLGLLEDE-GEAVQRVAEYWHAVGK-NLTGADCQQAWSAAFISWLMVSTNVPPQDFAPNE 157 +G ED+ G +RV YW A G+ NL G DCQ+ WSAAF+SW+M S VP F+ + Sbjct: 89 HVGYWEDDDGSHSRRVNSYWRAAGEPNLNGMDCQKPWSAAFMSWVMQSAGVPESQFSRSI 148 Query: 158 THFNYLSFLKDRQSRPSPQFVLRPAESEPIAPGDLICAPRGNNNITSID-----EIRPGL 212 H+ YL+ + D S P FV R + PGDL+CA R + + S D + L Sbjct: 149 AHWVYLARIVDAASLPGRYFVPRRLKDYSPRPGDLVCASRNPSRVFSADVYVTSRMLYSL 208 Query: 213 AGHCDLVVEVHADDGWAGVIGGNVFNSVSESLIPVDEQGRAQPIAARPWLVVVKNLL 269 + HCDLVV IGGNV NSVS+S +D +G +P RPW ++++N L Sbjct: 209 SAHCDLVVSKQGRT--LETIGGNVRNSVSKSRWELDPRGLVKPNKRRPWFLIMENRL 263