BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0133.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773790.1| type II secretion system protein [Herbaspiri... 402 e-110 ref|YP_004754569.1| Type 4 fimbrial assembly protein pilC [Colli... 326 3e-87 ref|YP_003048031.1| type II secretion system protein [Methyloten... 324 9e-87 ref|YP_004693438.1| Type II secretion system F domain-containing... 324 1e-86 ref|YP_001101027.1| type 4 fimbrial assembly protein [Herminiimo... 323 2e-86 >ref|YP_003773790.1| type II secretion system protein [Herbaspirillum seropedicae SmR1] gb|ADJ61882.1| bacterial type II secretion system protein [Herbaspirillum seropedicae SmR1] Length = 415 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 261/328 (79%), Positives = 286/328 (87%) Query: 1 MLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRQFDALFCNLV 60 MLQAGLPLLQALDIAIRG+G A+ GLL ++RQ V+RGDSLHAALA+HP++FDALFC LV Sbjct: 88 MLQAGLPLLQALDIAIRGAGADALGGLLATIRQDVARGDSLHAALARHPQRFDALFCQLV 147 Query: 61 RAAEDAGLLDTMLERIALYREKSLALRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFE 120 RAAE AG+LD+ML RIA YREKSLALRGKVRAALAYPCAVVLVA+ VTVVIMLWVVPAFE Sbjct: 148 RAAESAGVLDSMLARIASYREKSLALRGKVRAALAYPCAVVLVAVAVTVVIMLWVVPAFE 207 Query: 121 QMFQQFGAELPLPTRIVMATARLLGQHGPWLLLGTLMTGVLATLAWRRYLPLRLAAQRLS 180 QMF+ FGAELPLPTRIVM+ A L Q PWLL G + + AWRR+LPL AQRLS Sbjct: 208 QMFRHFGAELPLPTRIVMSLAHALTQAWPWLLPGLAIAVLAGLQAWRRWLPLGQHAQRLS 267 Query: 181 LSLPLFGKLLRQAALARWSRTFGTLFGAGIALVEALETVSGAAGNVVYADASLAVRDAVR 240 L LPL G LLRQAALARWSRTFGTL GAGIALV+ALETV+GAAGNVV ASLAVRDAVR Sbjct: 268 LRLPLLGGLLRQAALARWSRTFGTLLGAGIALVQALETVAGAAGNVVIGQASLAVRDAVR 327 Query: 241 NGASLHAAMQATGVFPDLAVQMTAVGEEAGALDAMLGRIADLNEREVDEAVTALTSLMEP 300 NGASLHAAMQATGVFPDLAVQMTAVGEE G LDAML +IA+LNEREVD+ VTALTSLMEP Sbjct: 328 NGASLHAAMQATGVFPDLAVQMTAVGEETGTLDAMLIKIAELNEREVDDTVTALTSLMEP 387 Query: 301 VIMAVLGVVIGGLVVAMYLPVFRMGAVV 328 IM VLG+VIGGLV+A+YLPVFRMG+VV Sbjct: 388 AIMTVLGLVIGGLVIALYLPVFRMGSVV 415 >ref|YP_004754569.1| Type 4 fimbrial assembly protein pilC [Collimonas fungivorans Ter331] gb|AEK63746.1| Type 4 fimbrial assembly protein pilC [Collimonas fungivorans Ter331] Length = 410 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 164/330 (49%), Positives = 239/330 (72%), Gaps = 4/330 (1%) Query: 1 MLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRQFDALFCNLV 60 M++AG+PLLQ+ DI +G +++ L+ +R V G SL A + P FD LFCNLV Sbjct: 83 MMKAGVPLLQSFDIVAKGHANPSVSKLVNDIRGDVETGTSLSQAFRKFPLYFDPLFCNLV 142 Query: 61 RAAEDAGLLDTMLERIALYREKSLALRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFE 120 A E AG+L+ +LER+A+Y+EK+LA++GK+++AL YP +++ VA +VT VIM+WVVPAF+ Sbjct: 143 GAGEQAGILEDLLERLAIYKEKTLAIKGKIKSALFYPVSILAVAFVVTAVIMIWVVPAFK 202 Query: 121 QMFQQFGAELPLPTRIVMATARLLGQHGPW-LLLGTLMTGV-LATLAWRRYLPLRLAAQR 178 Q+F FGA+LP PT VM+ + + G W ++ T+ G+ L +WRR L ++ R Sbjct: 203 QVFSSFGADLPAPTMFVMSISDFMV--GNWYIIFPTIFAGLYLFFQSWRRSLKMQRVMDR 260 Query: 179 LSLSLPLFGKLLRQAALARWSRTFGTLFGAGIALVEALETVSGAAGNVVYADASLAVRDA 238 L L P+FG ++R+A +ARW+RT T+F AG+ LVE+L++V GA+GN VY DA+ ++ Sbjct: 261 LLLKAPIFGDVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQSE 320 Query: 239 VRNGASLHAAMQATGVFPDLAVQMTAVGEEAGALDAMLGRIADLNEREVDEAVTALTSLM 298 V G SL AAM+ VFP++ QM ++GEE+G+LD MLG++AD E EVD+AV +L+SLM Sbjct: 321 VSTGTSLTAAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLM 380 Query: 299 EPVIMAVLGVVIGGLVVAMYLPVFRMGAVV 328 EP+IM +LGV+IGGLVVAMYLP+F++G+VV Sbjct: 381 EPLIMVILGVLIGGLVVAMYLPIFKLGSVV 410 >ref|YP_003048031.1| type II secretion system protein [Methylotenera mobilis JLW8] gb|ACT47504.1| type II secretion system protein [Methylotenera mobilis JLW8] Length = 407 Score = 324 bits (831), Expect = 9e-87, Method: Composition-based stats. Identities = 165/329 (50%), Positives = 241/329 (73%), Gaps = 2/329 (0%) Query: 1 MLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRQFDALFCNLV 60 M+++G+PLLQ+ DI +G A+A LL ++ V G SL AA ++P FDALFCNL+ Sbjct: 78 MMKSGVPLLQSFDIVGKGHSNPAVAKLLGDIKSDVETGSSLSAAFRKYPLYFDALFCNLI 137 Query: 61 RAAEDAGLLDTMLERIALYREKSLALRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFE 120 A E AG+LDT+L+R+A Y+EK A++ K+++AL YP ++++VA I+T VIM++VVPAF+ Sbjct: 138 SAGEQAGILDTLLDRLATYKEKIQAIKSKIKSALFYPVSIIVVAFIITAVIMIFVVPAFK 197 Query: 121 QMFQQFGAELPLPTRIVMATARLLGQHGPWLLLGTLMTGV-LATLAWRRYLPLRLAAQRL 179 ++F FGA+LP PT +VMA + + W + G++ G+ W+R L ++ RL Sbjct: 198 ELFSSFGADLPGPTLVVMAISEFF-VNWWWAIFGSIGFGLWFFFYTWKRSLSMQATMDRL 256 Query: 180 SLSLPLFGKLLRQAALARWSRTFGTLFGAGIALVEALETVSGAAGNVVYADASLAVRDAV 239 L +P+FG L+R+A +AR++RT T+F AG+ LVEAL++V+GA+GN VY DA+ ++ + Sbjct: 257 MLKVPVFGDLVRKATIARFARTMATMFSAGVPLVEALDSVAGASGNRVYYDATKRIQSEI 316 Query: 240 RNGASLHAAMQATGVFPDLAVQMTAVGEEAGALDAMLGRIADLNEREVDEAVTALTSLME 299 G SL AMQ VFP++ +QMTA+GEE+GALD+MLG++AD E EVD+AV AL+SLME Sbjct: 317 STGTSLTVAMQNAEVFPNMVLQMTAIGEESGALDSMLGKVADFYEGEVDDAVEALSSLME 376 Query: 300 PVIMAVLGVVIGGLVVAMYLPVFRMGAVV 328 P+IM VLGV+IGGLVVA+YLP+F++G VV Sbjct: 377 PIIMVVLGVLIGGLVVALYLPIFKLGQVV 405 >ref|YP_004693438.1| Type II secretion system F domain-containing protein [Nitrosomonas sp. Is79A3] gb|AEJ00039.1| Type II secretion system F domain-containing protein [Nitrosomonas sp. Is79A3] Length = 407 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 162/329 (49%), Positives = 240/329 (72%), Gaps = 2/329 (0%) Query: 1 MLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRQFDALFCNLV 60 M+++G+PLLQA DI RG A++ LL ++ V G +L A ++P FDAL+CNLV Sbjct: 79 MMKSGVPLLQAFDIVGRGHSNRALSKLLLDIKADVETGSNLTDAFRKYPLYFDALYCNLV 138 Query: 61 RAAEDAGLLDTMLERIALYREKSLALRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFE 120 A E AG+LD +L+R+A Y+EK A++GK+++AL YP ++++VA ++T VIM++V+PAF+ Sbjct: 139 GAGEAAGILDHILDRLATYKEKIQAIKGKIKSALFYPISIIVVAFVITAVIMIFVIPAFK 198 Query: 121 QMFQQFGAELPLPTRIVMATARLLGQHGPWLLLGTLMTGVLATL-AWRRYLPLRLAAQRL 179 +F+ FGAELP PT +VM + + W +LG L G+ A L W+R + ++ R Sbjct: 199 DLFEGFGAELPAPTLLVMTISNFFVAYW-WAILGVLGGGIYAFLYTWKRSISMQRVMDRF 257 Query: 180 SLSLPLFGKLLRQAALARWSRTFGTLFGAGIALVEALETVSGAAGNVVYADASLAVRDAV 239 +L LP+FG+++R+A +ARWSRT T+F AG+ LVE+L++V+GAAGN +Y +A+ ++ V Sbjct: 258 ALKLPIFGEVIRKATIARWSRTLSTMFAAGVPLVESLDSVAGAAGNHIYFEATKNIQIEV 317 Query: 240 RNGASLHAAMQATGVFPDLAVQMTAVGEEAGALDAMLGRIADLNEREVDEAVTALTSLME 299 G SL ++M T VFP++ +QM A+GEEAG+LD+ML +IAD E EVD+AV AL+SLME Sbjct: 318 STGNSLTSSMAGTNVFPNMVIQMVAIGEEAGSLDSMLSKIADFYEAEVDDAVAALSSLME 377 Query: 300 PVIMAVLGVVIGGLVVAMYLPVFRMGAVV 328 P+IM VLG +IGG+V+AMYLP+F+MG VV Sbjct: 378 PIIMVVLGTLIGGMVIAMYLPIFKMGMVV 406 >ref|YP_001101027.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans] emb|CAL62906.1| type 4 fimbrial assembly protein [Herminiimonas arsenicoxydans] Length = 410 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 164/329 (49%), Positives = 242/329 (73%), Gaps = 2/329 (0%) Query: 1 MLQAGLPLLQALDIAIRGSGQGAMAGLLTSVRQAVSRGDSLHAALAQHPRQFDALFCNLV 60 M++AG+PLLQ+ DI +G+ +++ L+ +R V G SL+ A + P FD LFCNLV Sbjct: 83 MMKAGVPLLQSFDIVAKGNDNPSVSKLIQDIRADVETGTSLNQAFRKFPLYFDPLFCNLV 142 Query: 61 RAAEDAGLLDTMLERIALYREKSLALRGKVRAALAYPCAVVLVAIIVTVVIMLWVVPAFE 120 A E AG+L+ +L R+A+Y+EK+LA++ K+++AL YP A++ VA IVT VIM+WVVPAF+ Sbjct: 143 GAGEQAGILEDLLTRLAIYKEKTLAIKAKIKSALFYPIAILAVAFIVTAVIMIWVVPAFK 202 Query: 121 QMFQQFGAELPLPTRIVMATARLLGQHGPWLLLGTLMTGV-LATLAWRRYLPLRLAAQRL 179 ++F+ FGA+LP PT +VMA + + +L+ G L G+ L +W+R L ++ RL Sbjct: 203 EVFKSFGADLPAPTLMVMAISDFFVAYW-YLIFGLLFAGLYLFFQSWKRSLKMQRTMDRL 261 Query: 180 SLSLPLFGKLLRQAALARWSRTFGTLFGAGIALVEALETVSGAAGNVVYADASLAVRDAV 239 L +P+FG ++R+A +ARW+RT T+F AG+ LVE+L++V GAAGN VY DA+ +++ V Sbjct: 262 LLKVPVFGPVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATKKIQNEV 321 Query: 240 RNGASLHAAMQATGVFPDLAVQMTAVGEEAGALDAMLGRIADLNEREVDEAVTALTSLME 299 G SL AMQ + VFP++ QM ++GEE+G+LD MLG++AD E EVDEAV +L+SLME Sbjct: 322 STGTSLTVAMQNSDVFPNMVTQMVSIGEESGSLDNMLGKVADFYEDEVDEAVASLSSLME 381 Query: 300 PVIMAVLGVVIGGLVVAMYLPVFRMGAVV 328 P+IM +LGV+IGGLV+AMYLP+F++G+VV Sbjct: 382 PLIMVILGVLIGGLVIAMYLPIFKLGSVV 410