BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0132.p (395 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773791.1| ATPase PilB [Herbaspirillum seropedicae SmR1... 607 e-172 ref|YP_004754568.1| Type 4 fimbrial assembly, ATPase PilB [Colli... 486 e-135 ref|YP_001101026.1| type 4 fimbrial biogenesis protein [Herminii... 485 e-135 ref|YP_001354686.1| PilB type IV pilus assembly protein [Janthin... 480 e-133 ref|ZP_03545075.1| type IV-A pilus assembly ATPase PilB [Comamon... 478 e-132 >ref|YP_003773791.1| ATPase PilB [Herbaspirillum seropedicae SmR1] emb|CAP19681.1| type IV pilus assembly protein [Herbaspirillum seropedicae] gb|ADJ61883.1| ATPase PilB protein [Herbaspirillum seropedicae SmR1] Length = 377 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 317/368 (86%), Positives = 345/368 (93%) Query: 28 DDVPVVRLLHKLLADAVGMGASDLHFEPFEHLFRVRLRLDGVLHELAQPPLSLRDKLATR 87 DDVPVVRLL+KLLADAV MGASDLHFEPFEH RVRLR+DG+LHELAQPPLSL+DKLATR Sbjct: 10 DDVPVVRLLYKLLADAVSMGASDLHFEPFEHYCRVRLRIDGILHELAQPPLSLKDKLATR 69 Query: 88 LKILARLDIAEKRLPQDGKMRLALGTRTVDFRVSTLPTQFGEKIVLRILDTAQAALSISD 147 LKILARLDIAEKRLPQDGKMRLAL TRTVDFRVSTLPTQFGEKIVLRILDT QA L++ Sbjct: 70 LKILARLDIAEKRLPQDGKMRLALETRTVDFRVSTLPTQFGEKIVLRILDTEQATLALEQ 129 Query: 148 LGYEPAQQEALLQAISKPHGLVLMTGPTGSGKTVSLYACLQRLNQPGVNIATAEDPVEIN 207 LGYEPAQ +AL QAI++PHG+VLMTGPTGSGKTVSLYACLQRLN+PG+NIATAEDPVEIN Sbjct: 130 LGYEPAQLQALQQAIARPHGMVLMTGPTGSGKTVSLYACLQRLNRPGINIATAEDPVEIN 189 Query: 208 LPGINQVSINERAGLDFALALRAFLRQDPDVLMVGEIRDLETADIAVKASQTGHLVLSTL 267 LPGINQVSINERAGL+FA+ALRAFLRQDPDVLMVGEIRDL+TADIA+KA+QTGHLVLSTL Sbjct: 190 LPGINQVSINERAGLNFAVALRAFLRQDPDVLMVGEIRDLDTADIAIKAAQTGHLVLSTL 249 Query: 268 HTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRKLCRCRRPAGGTPATFVPHGCPAC 327 HTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVR+LC CRRPA +FVPHGCPAC Sbjct: 250 HTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRRLCSCRRPARDASGSFVPHGCPAC 309 Query: 328 NQTGFRGRTGIYQVMPVSAAMQSLILAQAGTLELGRQAQAEGIIDLRRAGLLKVLRGETS 387 + TG+RGRTGIYQVMPVSA MQSLI AQAGT ++ RQA+AEG+IDLRRAGLLK LRG+TS Sbjct: 310 SHTGYRGRTGIYQVMPVSATMQSLIQAQAGTQDIARQARAEGVIDLRRAGLLKALRGDTS 369 Query: 388 VGEILACT 395 +GE+LA T Sbjct: 370 LGEVLAST 377 >ref|YP_004754568.1| Type 4 fimbrial assembly, ATPase PilB [Collimonas fungivorans Ter331] gb|AEK63745.1| Type 4 fimbrial assembly, ATPase PilB [Collimonas fungivorans Ter331] Length = 574 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 236/383 (61%), Positives = 309/383 (80%), Gaps = 18/383 (4%) Query: 31 PVVRLLHKLLADAVGMGASDLHFEPFEHLFRVRLRLDGVLHELAQPPLSLRDKLATRLKI 90 PVVR L K+L DA+ GASDLHFEPFE +R+R R+DGVL ++AQPPLS+++KL +R+K+ Sbjct: 190 PVVRFLQKILTDAINQGASDLHFEPFEKFYRIRFRVDGVLRDMAQPPLSIKEKLVSRIKV 249 Query: 91 LARLDIAEKRLPQDGKMRLALG-TRTVDFRVSTLPTQFGEKIVLRILDTAQAALSISDLG 149 +++LDI+EKR+PQDG+MRLA+ TR +DFRVSTLPT FGEK+V+RILD +QA + I LG Sbjct: 250 ISKLDISEKRVPQDGRMRLAVSKTRAIDFRVSTLPTLFGEKVVMRILDPSQAQMGIDALG 309 Query: 150 YEPAQQEALLQAISKPHGLVLMTGPTGSGKTVSLYACLQRLNQPGVNIATAEDPVEINLP 209 Y+P Q+E L++AI +P+G+VL+TGPTGSGKTVSLY CL LNQPG+NI+TAEDP EINLP Sbjct: 310 YDPDQKEILMEAIQRPYGMVLVTGPTGSGKTVSLYTCLNILNQPGINISTAEDPAEINLP 369 Query: 210 GINQVSINERAGLDFALALRAFLRQDPDVLMVGEIRDLETADIAVKASQTGHLVLSTLHT 269 G+NQV+IN+RAGL F +AL+AFLRQDPD++MVGEIRDLETADI++KA+QTGH+V STLHT Sbjct: 370 GVNQVNINDRAGLTFPVALKAFLRQDPDIIMVGEIRDLETADISIKAAQTGHMVFSTLHT 429 Query: 270 NDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRKLCRCRRP----------AGGTP--- 316 NDAP+TLTRL+NMGVPA+NIA+SV LI AQRL R+LC C++P AG T Sbjct: 430 NDAPSTLTRLMNMGVPAFNIASSVILITAQRLARRLCSCKQPITVQEEALLEAGFTEDDL 489 Query: 317 -ATFVPH---GCPACNQTGFRGRTGIYQVMPVSAAMQSLILAQAGTLELGRQAQAEGIID 372 +++P+ GC CN TG++GR GIYQ+MP++ ++ +ILA LE+ QA+ EG+ Sbjct: 490 DGSWMPYKAVGCDRCNGTGYKGRVGIYQIMPITEEIERIILAHGTALEIEAQAKREGVKT 549 Query: 373 LRRAGLLKVLRGETSVGEILACT 395 LR +GL+KV +G TS+ E+L CT Sbjct: 550 LRLSGLMKVKQGLTSLEEVLGCT 572 >ref|YP_001101026.1| type 4 fimbrial biogenesis protein [Herminiimonas arsenicoxydans] emb|CAL62905.1| Type 4 fimbrial assembly protein pilB [Herminiimonas arsenicoxydans] Length = 576 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 234/386 (60%), Positives = 309/386 (80%), Gaps = 18/386 (4%) Query: 28 DDVPVVRLLHKLLADAVGMGASDLHFEPFEHLFRVRLRLDGVLHELAQPPLSLRDKLATR 87 DD PVV+ LHK+L DA+ +GASDLHFEPFE +R+R R+DGVL ++AQPPL++++KLA+R Sbjct: 189 DDAPVVKFLHKILIDAINLGASDLHFEPFEKFYRIRFRVDGVLRDIAQPPLAIKEKLASR 248 Query: 88 LKILARLDIAEKRLPQDGKMRLALG-TRTVDFRVSTLPTQFGEKIVLRILDTAQAALSIS 146 +K++++LDI+EKR+PQDG+M+L + TR++DFRVSTLPT FGEKIV+RILD +QA + I Sbjct: 249 IKVISKLDISEKRVPQDGRMKLVMSKTRSIDFRVSTLPTLFGEKIVMRILDGSQAQMGIE 308 Query: 147 DLGYEPAQQEALLQAISKPHGLVLMTGPTGSGKTVSLYACLQRLNQPGVNIATAEDPVEI 206 LGY+P Q+E LL AI +P+G+VL+TGPTGSGKTVSLY CL LN+PG+NI+TAEDP EI Sbjct: 309 ALGYDPDQKETLLNAIQRPYGMVLVTGPTGSGKTVSLYTCLNILNKPGINISTAEDPAEI 368 Query: 207 NLPGINQVSINERAGLDFALALRAFLRQDPDVLMVGEIRDLETADIAVKASQTGHLVLST 266 NLPG+NQV++N+RAGL F +AL+AFLRQDPD++MVGEIRDLETADIA+KA+QTGH+V ST Sbjct: 369 NLPGVNQVNVNDRAGLTFPVALKAFLRQDPDIIMVGEIRDLETADIAIKAAQTGHMVFST 428 Query: 267 LHTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRKLCRCRRP----------AG--- 313 LHTNDAPATLTRL+NMGV +NIA+SV LI AQRLVR+LC C++ AG Sbjct: 429 LHTNDAPATLTRLMNMGVAPFNIASSVILITAQRLVRRLCTCKQTTVIPDEALLEAGFTE 488 Query: 314 ----GTPATFVPHGCPACNQTGFRGRTGIYQVMPVSAAMQSLILAQAGTLELGRQAQAEG 369 GT + P GC C+ +G++GR G+YQ+MP+S ++ +IL +LE+ QA+ +G Sbjct: 489 DDLDGTWLPYKPVGCERCSGSGYKGRLGVYQIMPISEEIEHIILNHGTSLEIETQAKKDG 548 Query: 370 IIDLRRAGLLKVLRGETSVGEILACT 395 + LR +GL+KV +G TS+ EIL CT Sbjct: 549 VRSLRESGLVKVKQGLTSLEEILGCT 574 >ref|YP_001354686.1| PilB type IV pilus assembly protein [Janthinobacterium sp. Marseille] gb|ABR88925.1| PilB type IV pilus assembly protein [Janthinobacterium sp. Marseille] Length = 561 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 234/393 (59%), Positives = 309/393 (78%), Gaps = 19/393 (4%) Query: 22 DTAVAD-DDVPVVRLLHKLLADAVGMGASDLHFEPFEHLFRVRLRLDGVLHELAQPPLSL 80 D AD DD P+V+ L K+L DA+ +GASDLHFEPFE +R+R R+DGVL ++AQPPL++ Sbjct: 167 DGGTADIDDAPIVKFLQKILVDAINLGASDLHFEPFEKFYRIRFRVDGVLRDIAQPPLAI 226 Query: 81 RDKLATRLKILARLDIAEKRLPQDGKMRLALG-TRTVDFRVSTLPTQFGEKIVLRILDTA 139 ++KLA+R+K++++LDI+EKR+PQDG+M+L + TR++DFRVSTLPT FGEKIV+RILD + Sbjct: 227 KEKLASRIKVISKLDISEKRVPQDGRMKLVMSKTRSIDFRVSTLPTLFGEKIVMRILDGS 286 Query: 140 QAALSISDLGYEPAQQEALLQAISKPHGLVLMTGPTGSGKTVSLYACLQRLNQPGVNIAT 199 QA + I LGY+P Q+E LL AI +P+G+VL+TGPTGSGKTVSLY CL LN+PG+NI+T Sbjct: 287 QAQMGIEALGYDPDQKETLLNAIQRPYGMVLVTGPTGSGKTVSLYTCLNILNKPGINIST 346 Query: 200 AEDPVEINLPGINQVSINERAGLDFALALRAFLRQDPDVLMVGEIRDLETADIAVKASQT 259 AEDP EINLPG+NQV++N+RAGL F +AL+AFLRQDPD++MVGEIRDLETADIA+KA+QT Sbjct: 347 AEDPAEINLPGVNQVNVNDRAGLTFPVALKAFLRQDPDIIMVGEIRDLETADIAIKAAQT 406 Query: 260 GHLVLSTLHTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRKLCRCRRP-------- 311 GH+V STLHTNDAPATLTRL+NMGV +NIA+SV LI AQRL R+LC C++ Sbjct: 407 GHMVFSTLHTNDAPATLTRLMNMGVAPFNIASSVILITAQRLARRLCSCKQTTVIPDEAL 466 Query: 312 --AG-------GTPATFVPHGCPACNQTGFRGRTGIYQVMPVSAAMQSLILAQAGTLELG 362 AG GT + P GC C+ +G++GR GIYQ+MP+S ++ +IL ++E+ Sbjct: 467 LEAGFSEEDLDGTWLPYKPVGCERCSGSGYKGRVGIYQIMPISEEIEGIILNHGTSMEIE 526 Query: 363 RQAQAEGIIDLRRAGLLKVLRGETSVGEILACT 395 QA+ +G+ LR +GL+KV G TS+ EIL CT Sbjct: 527 AQAKKDGVRTLRESGLVKVKLGLTSLEEILGCT 559 >ref|ZP_03545075.1| type IV-A pilus assembly ATPase PilB [Comamonas testosteroni KF-1] gb|EED69361.1| type IV-A pilus assembly ATPase PilB [Comamonas testosteroni KF-1] Length = 580 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 237/387 (61%), Positives = 304/387 (78%), Gaps = 20/387 (5%) Query: 28 DDVPVVRLLHKLLADAVGMGASDLHFEPFEHLFRVRLRLDGVLHELAQPPLSLRDKLATR 87 +D PVV+ LHK+L DA M ASDLHFEP+EH +RVR R+DG L E+A PP++++DKLA+R Sbjct: 193 EDAPVVKFLHKMLLDAFNMRASDLHFEPYEHNYRVRFRIDGELREIASPPIAIKDKLASR 252 Query: 88 LKILARLDIAEKRLPQDGKMRLALGT-RTVDFRVSTLPTQFGEKIVLRILDTAQAALSIS 146 +K+++RLDI+EKR+PQDG+M+L +G R +DFRVSTLPT FGEKIV+RILD + A + I Sbjct: 253 IKVISRLDISEKRVPQDGRMKLKVGPDRVIDFRVSTLPTLFGEKIVIRILDPSSAKMGID 312 Query: 147 DLGYEPAQQEALLQAISKPHGLVLMTGPTGSGKTVSLYACLQRLNQPGVNIATAEDPVEI 206 LGYEP ++E LL+AI++P+G++L+TGPTGSGKTVSLY CL LNQPGVNIATAEDP EI Sbjct: 313 ALGYEPEEKERLLKAINRPYGMILVTGPTGSGKTVSLYTCLNLLNQPGVNIATAEDPSEI 372 Query: 207 NLPGINQVSINERAGLDFALALRAFLRQDPDVLMVGEIRDLETADIAVKASQTGHLVLST 266 N+PG+NQV++NE+AGL FA AL++FLRQDPD++MVGEIRDLETADI++KA+QTGHLVLST Sbjct: 373 NMPGVNQVNVNEKAGLTFAAALKSFLRQDPDIIMVGEIRDLETADISIKAAQTGHLVLST 432 Query: 267 LHTNDAPATLTRLLNMGVPAYNIAASVSLIVAQRLVRKLC-RCRRPA------------- 312 LHTNDAP TLTR+ NMG+ +NIA+SV LI AQRL R+LC +C+ PA Sbjct: 433 LHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCAQCKEPADIPHDALIEAGYA 492 Query: 313 ----GGTPATFVPHGCPACNQTGFRGRTGIYQVMPVSAAMQSLILAQAGTLELGRQAQAE 368 G+ ++ P GCPACN G++GR GIYQVMP+S +Q +IL LE+ QA+AE Sbjct: 493 EEELDGSWVSYKPVGCPACNN-GYKGRVGIYQVMPISEEIQRIILRDGSALEIAEQAKAE 551 Query: 369 GIIDLRRAGLLKVLRGETSVGEILACT 395 G+ LR +GL KV G TS+ E+LA T Sbjct: 552 GVRSLRGSGLHKVKLGLTSLEEVLAVT 578