BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0130.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001526275.1| 2-hydroxyacid dehydrogenase [Azorhizobium ca... 317 2e-84 ref|ZP_06685158.1| D-isomer specific 2-hydroxyacid dehydrogenase... 312 5e-83 ref|YP_001633494.1| putative 2-hydroxyacid dehydrogenase [Bordet... 307 1e-81 gb|EFV82311.1| hypothetical protein HMPREF0005_00734 [Achromobac... 298 7e-79 gb|EGP46529.1| putative 2-hydroxyacid dehydrogenase [Achromobact... 293 2e-77 >ref|YP_001526275.1| 2-hydroxyacid dehydrogenase [Azorhizobium caulinodans ORS 571] dbj|BAF89357.1| putative 2-hydroxyacid dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 321 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 169/313 (53%), Positives = 217/313 (69%), Gaps = 3/313 (0%) Query: 9 VLLIKSGGAAALAEWRASFHEFAPGLGLDVRAWDDPEVDPARVQFVLVWQPEAGRLAQFP 68 ++ +KSGG AA+ +W+A F E AP L +VR WDDP+V P V +V+VWQPE GRLA +P Sbjct: 11 IIAVKSGGEAAIPDWQACFAELAPHL--EVRWWDDPQVAPEDVDYVIVWQPEPGRLAAYP 68 Query: 69 NLKAIISAAAGVDHILADPHLPE-LPIVRMVTPETQQRMAEFTLMSSLMLLKDMPRIIAQ 127 NL+ I+S+AAG DHI +DP P LPIVR VTPE QRMAEF +MS+L L++D+ R I Sbjct: 69 NLRLILSSAAGTDHITSDPSWPRHLPIVRAVTPEASQRMAEFIVMSTLALMRDLKRAITG 128 Query: 128 QMRAEWREFSTPRTARETRVGVLGLGALGLSAARMHAAVGFETAGWARSPRSEKGLACFA 187 Q + W F R A + RVG+LGLG++G ++ARM +VGF +GW+RS ++ +G+ C A Sbjct: 129 QHQRVWDNFEVDRCAWDMRVGILGLGSMGAASARMLRSVGFGVSGWSRSQKAIEGITCHA 188 Query: 188 GADALPDFLGRTDILICLLPETTDTRHLINADLLRQLPRGAAVINVGRGSHVCLTDLLAA 247 G + L FL TDIL+CLLP T +T LINADLL +LP GA +IN GRG+H+ L D+L+A Sbjct: 189 GREGLDAFLKETDILVCLLPNTPETTGLINADLLAKLPAGAGLINAGRGTHMVLEDVLSA 248 Query: 248 LDSGHLSGAVLDVFDEEPLPAEAAVWRHPRVLVTPHAAATPSRRERARQAAVAIAAMLGG 307 LDSG LSGAVLDVF+EEPL A+ W HP+V+VTPH + SRR RA A I G Sbjct: 249 LDSGQLSGAVLDVFEEEPLLADNPAWTHPKVIVTPHIGSIASRRARAAFYAEQIRRFEAG 308 Query: 308 LPPPHLYDRAKGY 320 P LYD GY Sbjct: 309 EPMDALYDPVAGY 321 >ref|ZP_06685158.1| D-isomer specific 2-hydroxyacid dehydrogenase [Achromobacter piechaudii ATCC 43553] gb|EFF77948.1| D-isomer specific 2-hydroxyacid dehydrogenase [Achromobacter piechaudii ATCC 43553] Length = 311 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 166/312 (53%), Positives = 212/312 (67%), Gaps = 4/312 (1%) Query: 10 LLIKSGGAAALAEWRASFHEFAPGLGLDVRAWDDPEVDPARVQFVLVWQPEAGRLAQFPN 69 L+I SGG A+ WRA F FAP L DV W + EVDPA V + LVW P+AGRLA FPN Sbjct: 3 LIINSGGPQAIDAWRAQFRTFAPEL--DVVGWHE-EVDPASVDYALVWAPDAGRLATFPN 59 Query: 70 LKAIISAAAGVDHILADPHLPE-LPIVRMVTPETQQRMAEFTLMSSLMLLKDMPRIIAQQ 128 LK IISA AGVDHILADP LP L I RMVT TQ MAEF L +LML +D+ R++ Q Sbjct: 60 LKLIISAGAGVDHILADPQLPRHLSIARMVTARTQTEMAEFVLTCALMLTRDIKRVVDNQ 119 Query: 129 MRAEWREFSTPRTARETRVGVLGLGALGLSAARMHAAVGFETAGWARSPRSEKGLACFAG 188 R W F + R A + RVG++GLG LG++AA++ A VGF +GW+R +G+ +AG Sbjct: 120 ARRHWEVFDSLRVAADVRVGIMGLGHLGIAAAQLLARVGFPVSGWSRGSSKLEGMPSYAG 179 Query: 189 ADALPDFLGRTDILICLLPETTDTRHLINADLLRQLPRGAAVINVGRGSHVCLTDLLAAL 248 FL TD+L+CLLP T T+ ++N L QLPRGA++IN GRG+H+ DLLAAL Sbjct: 180 QAEFGQFLSNTDLLVCLLPATDATKGILNTATLSQLPRGASLINAGRGAHMVTPDLLAAL 239 Query: 249 DSGHLSGAVLDVFDEEPLPAEAAVWRHPRVLVTPHAAATPSRRERARQAAVAIAAMLGGL 308 DSGHL AVLDVF++EPLPA++ +W HP++++TPH AA P R+ERAR A I + G Sbjct: 240 DSGHLQQAVLDVFEQEPLPADSPLWTHPQIIITPHCAAIPDRKERARHTAWLIQSNERGE 299 Query: 309 PPPHLYDRAKGY 320 P++YD +GY Sbjct: 300 ALPNIYDPNRGY 311 >ref|YP_001633494.1| putative 2-hydroxyacid dehydrogenase [Bordetella petrii DSM 12804] emb|CAP45227.1| putative 2-hydroxyacid dehydrogenase [Bordetella petrii] Length = 312 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 174/312 (55%), Positives = 212/312 (67%), Gaps = 3/312 (0%) Query: 10 LLIKSGGAAALAEWRASFHEFAPGLGLDVRAWDDPEVDPARVQFVLVWQPEAGRLAQFPN 69 L+IKSGGA AL EW F EFAPGL + R +P DP +V + LVW+P+ G LA FPN Sbjct: 3 LVIKSGGAQALPEWSEHFREFAPGLQISGR--HEPVADPGQVGYALVWEPDPGWLASFPN 60 Query: 70 LKAIISAAAGVDHILADPHLP-ELPIVRMVTPETQQRMAEFTLMSSLMLLKDMPRIIAQQ 128 LK IIS+ AGVDHILADP LP +PI R+VT ET M+EF L ++L + K+ R Q Sbjct: 61 LKLIISSGAGVDHILADPQLPAHVPIARLVTQETAGEMSEFVLAAALAITKEFKRFANDQ 120 Query: 129 MRAEWREFSTPRTARETRVGVLGLGALGLSAARMHAAVGFETAGWARSPRSEKGLACFAG 188 W PR R+ RVGV+GLG LG + A + A GF TAGW+R+P G+ + G Sbjct: 121 AICRWDTPEVPRMMRDMRVGVMGLGYLGSATAALLARTGFPTAGWSRAPAPIAGVDTYGG 180 Query: 189 ADALPDFLGRTDILICLLPETTDTRHLINADLLRQLPRGAAVINVGRGSHVCLTDLLAAL 248 LP FL RTDIL+CLLP T TR ++ A+ L QLPRGAA+I+VGRGSH+ DLLAAL Sbjct: 181 PQQLPAFLARTDILVCLLPGTEATRGILGAETLAQLPRGAALISVGRGSHMVEPDLLAAL 240 Query: 249 DSGHLSGAVLDVFDEEPLPAEAAVWRHPRVLVTPHAAATPSRRERARQAAVAIAAMLGGL 308 DSG LS AVLDVF+ EPLPA++ +WRHP V++TPH AATP+RRERAR A I G Sbjct: 241 DSGQLSQAVLDVFEAEPLPADSPLWRHPGVMITPHCAATPTRRERARYVAELIRRCEAGE 300 Query: 309 PPPHLYDRAKGY 320 P P+LYD AKGY Sbjct: 301 PLPNLYDPAKGY 312 >gb|EFV82311.1| hypothetical protein HMPREF0005_00734 [Achromobacter xylosoxidans C54] Length = 312 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 166/313 (53%), Positives = 213/313 (68%), Gaps = 5/313 (1%) Query: 10 LLIKSGGAAALAEWRASFHEFAPGLGLDVRAWDDPEVDPARVQFVLVWQPEAGRLAQFPN 69 L+I+SGG +A+ EWR F AP L ++ +W D +VDPA + + LVW P+ GRLA FPN Sbjct: 3 LIIRSGGESAMEEWREQFKRHAPDL--EIVSWFD-DVDPASIDYALVWAPDPGRLATFPN 59 Query: 70 LKAIISAAAGVDHILADPHLPE-LPIVRMVTPETQQRMAEFTLMSSLMLLKDMPRIIAQQ 128 LK IISA AGVDHI++DP P L I RMVTP T+ MAEF L S+LML +D+ R I QQ Sbjct: 60 LKLIISAGAGVDHIVSDPAWPRHLRIARMVTPRTETEMAEFVLTSALMLTRDLKRAIDQQ 119 Query: 129 MRAEWREFSTPRTARETRVGVLGLGALGLSAARMHAAVGFETAGWARSPRS-EKGLACFA 187 R W + + R A + RVG++GLG LG++AAR+ A VGF +GW+R + GL +A Sbjct: 120 ARRHWELYDSLRVAADVRVGIMGLGHLGIAAARLLAKVGFPVSGWSRGATTLPDGLPSYA 179 Query: 188 GADALPDFLGRTDILICLLPETTDTRHLINADLLRQLPRGAAVINVGRGSHVCLTDLLAA 247 G D P+FL RTD+L+CLLP T TR ++N D LPRGA++IN GRGSH+ DLL A Sbjct: 180 GPDQFPEFLSRTDLLVCLLPATEATRGILNRDTFAHLPRGASLINAGRGSHMVTQDLLDA 239 Query: 248 LDSGHLSGAVLDVFDEEPLPAEAAVWRHPRVLVTPHAAATPSRRERARQAAVAIAAMLGG 307 LDSGHL A+LDVFD EPLP E+ +W HP +++TPH AA P R+ERAR A I A G Sbjct: 240 LDSGHLHQALLDVFDPEPLPPESPLWTHPNIIITPHCAAIPDRQERARHTAWLITANERG 299 Query: 308 LPPPHLYDRAKGY 320 P++YD +GY Sbjct: 300 EALPNIYDPVRGY 312 >gb|EGP46529.1| putative 2-hydroxyacid dehydrogenase [Achromobacter xylosoxidans AXX-A] Length = 312 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 163/313 (52%), Positives = 212/313 (67%), Gaps = 5/313 (1%) Query: 10 LLIKSGGAAALAEWRASFHEFAPGLGLDVRAWDDPEVDPARVQFVLVWQPEAGRLAQFPN 69 L+I+SGG +A+ EWR F AP L ++ +W D +VDPA + + LVW P+ GRLA FPN Sbjct: 3 LIIRSGGESAMQEWRDHFKIHAPDL--EIVSWYD-DVDPASIDYALVWAPDPGRLATFPN 59 Query: 70 LKAIISAAAGVDHILADPHLPE-LPIVRMVTPETQQRMAEFTLMSSLMLLKDMPRIIAQQ 128 LK IISA AGVDHI++DP P LPI RMVTP T+ MAEF L S+LML +D+ R I QQ Sbjct: 60 LKLIISAGAGVDHIVSDPAWPRHLPIARMVTPRTETEMAEFVLTSALMLTRDLKRAIDQQ 119 Query: 129 MRAEWREFSTPRTARETRVGVLGLGALGLSAARMHAAVGFETAGWARSPRS-EKGLACFA 187 R W + + R A + RVG++GLG LG++AAR+ A VGF +GW+R + GL +A Sbjct: 120 ARRHWELYDSLRVAADVRVGIMGLGHLGIAAARLLAKVGFPVSGWSRGASTLPDGLPSYA 179 Query: 188 GADALPDFLGRTDILICLLPETTDTRHLINADLLRQLPRGAAVINVGRGSHVCLTDLLAA 247 G D FL RTD+L+CLLP T TR ++N D LPRGA++IN GRG+H+ D+L A Sbjct: 180 GPDQFASFLSRTDLLVCLLPATEATRGILNRDTFAHLPRGASLINAGRGTHMVTQDVLDA 239 Query: 248 LDSGHLSGAVLDVFDEEPLPAEAAVWRHPRVLVTPHAAATPSRRERARQAAVAIAAMLGG 307 LD+GHL A+LDVFD EPLP E+ +W HP +++TPH AA P R+ERAR A I A G Sbjct: 240 LDTGHLHQALLDVFDPEPLPPESPLWTHPSIIITPHCAAIPDRQERARHTAWLITANERG 299 Query: 308 LPPPHLYDRAKGY 320 P++YD +GY Sbjct: 300 EALPNIYDPTRGY 312