BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0129.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_550740.1| IclR family transcriptional regulator [Polaromo... 358 6e-97 ref|ZP_04942326.1| regulatory proteins, IclR [Burkholderia cenoc... 352 5e-95 ref|YP_624579.1| IclR family transcriptional regulator [Burkhold... 351 8e-95 ref|YP_002233297.1| IclR family regulatory protein [Burkholderia... 351 9e-95 ref|YP_554553.1| IclR family transcriptional regulator [Burkhold... 349 2e-94 >ref|YP_550740.1| IclR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45842.1| transcriptional regulator, IclR family [Polaromonas sp. JS666] Length = 288 Score = 358 bits (919), Expect = 6e-97, Method: Composition-based stats. Identities = 188/282 (66%), Positives = 227/282 (80%), Gaps = 7/282 (2%) Query: 1 MSEHNDEATAASAPASLPVNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLL 60 M E+ E +AS+ +QR FA+LRALA +G R+T +AKA GLTQ TTHRLL Sbjct: 12 MKENPKEDDSASS-------SVQRAFAILRALAATQAKGGRITHIAKATGLTQATTHRLL 64 Query: 61 QSLAGEGVVEQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLL 120 QSL E VVEQD SKLYRL +D FALAA+AGN+ D+R+LCRP++LRLC SLGDT+FLL+ Sbjct: 65 QSLVAERVVEQDAASKLYRLSIDFFALAAQAGNSMDLRALCRPSMLRLCASLGDTIFLLV 124 Query: 121 RSRFDAVCVDRVDGPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEEREEVIRYNVPRL 180 RS FDAVC+DR +GPFPIR+FTGDIGGRVALG+GQG+LAILAFLPE EREEVIRYN+PR+ Sbjct: 125 RSGFDAVCLDRSEGPFPIRSFTGDIGGRVALGMGQGSLAILAFLPESEREEVIRYNLPRM 184 Query: 181 REFGVYDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSR 240 RE+GVYDEVYLRTEIERVR+TGYA R GLLDGMAG+GVP+ D G V ALSVGT++SR Sbjct: 185 REYGVYDEVYLRTEIERVRQTGYAGRNTGLLDGMAGVGVPVLDREGRAVAALSVGTISSR 244 Query: 241 LTEERLPTVVQMLQREAAALSRRINPFDPALRRPMHQANPVE 282 L+ +RLPTVV++L+REA A+ ++NPFD LRRP P + Sbjct: 245 LSPDRLPTVVELLKREATAIGAQLNPFDSTLRRPAQSLAPTD 286 >ref|ZP_04942326.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] gb|EAY65497.1| regulatory proteins, IclR [Burkholderia cenocepacia PC184] Length = 300 Score = 352 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 186/271 (68%), Positives = 223/271 (82%), Gaps = 3/271 (1%) Query: 6 DEATAASAPASLPVNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAG 65 D A AA AP + +QR FA+LRALA G+RVT +AKA+GLTQGT HR+LQSL Sbjct: 26 DSADAAGAPGT---GMLQRAFAILRALAGMQQDGVRVTHLAKAVGLTQGTAHRILQSLIA 82 Query: 66 EGVVEQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRFD 125 EG+VEQDE+SKLYRL +D FALAA AGN S +R+LCRPALLRLC SLG+T+FLL++S FD Sbjct: 83 EGMVEQDEQSKLYRLSVDFFALAALAGNPSSMRTLCRPALLRLCASLGETIFLLVKSGFD 142 Query: 126 AVCVDRVDGPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEEREEVIRYNVPRLREFGV 185 AVC+D +GPFPIR+FTGDIGGR+ALGVGQG+LAILAFLPE EREEVIR+NVPR+R +GV Sbjct: 143 AVCLDLCEGPFPIRSFTGDIGGRIALGVGQGSLAILAFLPEAEREEVIRFNVPRIRGYGV 202 Query: 186 YDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSRLTEER 245 DEVYLRTEIERVR+ GYA R +G+LDGMAG+ VP+ D G VGALSVGTL SRL ++R Sbjct: 203 LDEVYLRTEIERVRQLGYAGRNSGVLDGMAGVAVPILDRTGYPVGALSVGTLASRLGDDR 262 Query: 246 LPTVVQMLQREAAALSRRINPFDPALRRPMH 276 +P VV++L+R+A A+ R NPFD ALRRPMH Sbjct: 263 MPMVVELLRRQADAIGPRTNPFDAALRRPMH 293 >ref|YP_624579.1| IclR family transcriptional regulator [Burkholderia cenocepacia AU 1054] ref|YP_837268.1| IclR family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABF79606.1| transcriptional regulator, IclR family [Burkholderia cenocepacia AU 1054] gb|ABK10375.1| transcriptional regulator, IclR family [Burkholderia cenocepacia HI2424] Length = 300 Score = 351 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 186/271 (68%), Positives = 223/271 (82%), Gaps = 3/271 (1%) Query: 6 DEATAASAPASLPVNGIQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAG 65 D A AA AP + +QR FA+LRALA G+RVT +AKA+GLTQGT HR+LQSL Sbjct: 26 DSADAAGAPGT---GMLQRAFAILRALAGMQQDGVRVTHLAKAVGLTQGTAHRILQSLIA 82 Query: 66 EGVVEQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRFD 125 EG+VEQDE+SKLYRL +D FALAA AGN S +R+LCRPALLRLC SLG+T+FLL++S FD Sbjct: 83 EGMVEQDEQSKLYRLSVDFFALAALAGNPSSMRTLCRPALLRLCASLGETIFLLVKSGFD 142 Query: 126 AVCVDRVDGPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEEREEVIRYNVPRLREFGV 185 AVC+D +GPFPIR+FTGDIGGR+ALGVGQG+LAILAFLPE EREEVIR+NVPR+R +GV Sbjct: 143 AVCLDLCEGPFPIRSFTGDIGGRIALGVGQGSLAILAFLPEAEREEVIRFNVPRIRGYGV 202 Query: 186 YDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSRLTEER 245 DEVYLRTEIERVR+ GYA R +G+LDGMAG+ VP+ D G VGALSVGTL SRL ++R Sbjct: 203 LDEVYLRTEIERVRQLGYAGRNSGVLDGMAGVAVPILDRTGYPVGALSVGTLASRLGDDR 262 Query: 246 LPTVVQMLQREAAALSRRINPFDPALRRPMH 276 +P VV++L+R+A A+ R NPFD ALRRPMH Sbjct: 263 MPMVVELLRRQADAIGPRTNPFDAALRRPMH 293 >ref|YP_002233297.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR54533.1| IclR family regulatory protein [Burkholderia cenocepacia J2315] Length = 301 Score = 351 bits (900), Expect = 9e-95, Method: Composition-based stats. Identities = 186/271 (68%), Positives = 224/271 (82%), Gaps = 1/271 (0%) Query: 7 EATAASAPASLPVNG-IQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLAG 65 +A A PA P G +QR FA+LRALA G+RVT +AKA+GLTQGT HR+LQSL Sbjct: 24 DAADAVEPAGAPGTGMLQRAFAILRALAGMQQDGVRVTHLAKAVGLTQGTAHRILQSLIA 83 Query: 66 EGVVEQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRFD 125 EG+VEQDE+SKLYRL +D FALAA+AGN S +R+LCRPALLRLC SLG+T+FLL++S FD Sbjct: 84 EGMVEQDEQSKLYRLSVDFFALAAQAGNPSSMRTLCRPALLRLCASLGETIFLLVKSGFD 143 Query: 126 AVCVDRVDGPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEEREEVIRYNVPRLREFGV 185 AVC+D +GPFPIR+FTGDIGGR+ALGVGQG+LAILAFLPE EREEVIR+NVPR+R +GV Sbjct: 144 AVCLDLCEGPFPIRSFTGDIGGRIALGVGQGSLAILAFLPEAEREEVIRFNVPRIRGYGV 203 Query: 186 YDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSRLTEER 245 DEVYLRTEIERVR+ GYA R +G+LDGMAG+ VP+ D G VGALSVGTL SRL ++R Sbjct: 204 LDEVYLRTEIERVRQLGYAGRNSGVLDGMAGVAVPILDRTGYPVGALSVGTLASRLGDDR 263 Query: 246 LPTVVQMLQREAAALSRRINPFDPALRRPMH 276 +P VV++L+R+A A+ R NPFD ALRRPMH Sbjct: 264 MPMVVELLRRQADAIGPRTNPFDAALRRPMH 294 >ref|YP_554553.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE35203.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 292 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 183/272 (67%), Positives = 224/272 (82%), Gaps = 1/272 (0%) Query: 6 DEATAASAPASLPVNG-IQRTFAVLRALADAPPQGMRVTQVAKAIGLTQGTTHRLLQSLA 64 D TA + P P G ++R FAV+RAL++A P G RVT++AKA+GLTQGT HR+L +L Sbjct: 8 DADTAVAEPGGTPGPGMLERAFAVIRALSEAQPDGGRVTRLAKAVGLTQGTVHRILHALI 67 Query: 65 GEGVVEQDERSKLYRLGMDLFALAARAGNASDVRSLCRPALLRLCGSLGDTVFLLLRSRF 124 EG+VEQDE SKLYRL +D FALAA+AGN S +R+LCRPALLRLC SLGDT+FLL++S F Sbjct: 68 AEGIVEQDENSKLYRLSVDFFALAAQAGNPSGMRTLCRPALLRLCASLGDTIFLLVKSSF 127 Query: 125 DAVCVDRVDGPFPIRAFTGDIGGRVALGVGQGALAILAFLPEEEREEVIRYNVPRLREFG 184 DAVC+D +GPFPIR+FTGDIGGRVALGVGQG+LAILAFLPE EREE+IR+NVPR+R +G Sbjct: 128 DAVCLDICEGPFPIRSFTGDIGGRVALGVGQGSLAILAFLPEAEREEIIRFNVPRIRGYG 187 Query: 185 VYDEVYLRTEIERVRETGYAARQAGLLDGMAGLGVPLFDAGGNIVGALSVGTLTSRLTEE 244 V DEVYLRTEIERVR+ GYA R +G+LDGMAG+ VP+ D G V ALSVGTL +RL ++ Sbjct: 188 VLDEVYLRTEIERVRQFGYAGRNSGVLDGMAGVAVPILDRTGVAVAALSVGTLAARLADD 247 Query: 245 RLPTVVQMLQREAAALSRRINPFDPALRRPMH 276 RLP VV++L+R+A A+ + NPFD ALRRPMH Sbjct: 248 RLPMVVELLRRQADAIGPQTNPFDVALRRPMH 279