BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0128.p (361 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942237.1| ABC transporter [Variovorax paradoxus S110] ... 485 e-135 ref|YP_004152654.1| ABC transporter [Variovorax paradoxus EPS] >... 483 e-134 ref|YP_522168.1| ABC transporter-like protein [Rhodoferax ferrir... 471 e-131 ref|YP_550739.1| ABC transporter-like protein [Polaromonas sp. J... 459 e-127 ref|ZP_08874188.1| ABC transporter-like protein [Verminephrobact... 457 e-126 >ref|YP_002942237.1| ABC transporter [Variovorax paradoxus S110] gb|ACS16971.1| ABC transporter related [Variovorax paradoxus S110] Length = 356 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 252/361 (69%), Positives = 289/361 (80%), Gaps = 5/361 (1%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 MSFL LT+++KFYG T+AVS NLTVEKGEF+SLLGPSGCGKTTTLQMIAGFE VS GRI Sbjct: 1 MSFLRLTDLTKFYGATRAVSAMNLTVEKGEFVSLLGPSGCGKTTTLQMIAGFEPVSSGRI 60 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 EL G+DITHAK NTRGLGIVFQTYALFPHMTV NV+FGLEMRK AE+ +RV QAL+L Sbjct: 61 ELAGKDITHAKANTRGLGIVFQTYALFPHMTVADNVSFGLEMRKMPKAERAERVKQALAL 120 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 VHLE H ARYPRELSGGQRQRVALARALVI PPVLLLDEPLSNLDAKLREEMQFELR IQ Sbjct: 121 VHLEAHAARYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAKLREEMQFELRQIQ 180 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLL 240 RKVGTTT+MVTHDQSEAMSISDRVVVME G TQ+ P VYEHP+ RFISTFVGKANLL Sbjct: 181 RKVGTTTVMVTHDQSEAMSISDRVVVMEGGCATQIDHPHRVYEHPSTRFISTFVGKANLL 240 Query: 241 EGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCNGEVV 300 +G+V + +AVG L++E DSG + G V++ +RPEK++ G+GR +G+V+ Sbjct: 241 DGRVTASGARSCQVAVGA--LAVEVDDSGYKPGDAVLMSVRPEKLQLVEAGRGRLDGQVL 298 Query: 301 RRFFLGSQWMYEVETPLGLLSVLSANDGAEALEQGAAVGLAWSDYSLRLVSTARSDEGVA 360 RFFLGSQW+Y + TP G L VLS NDG +AL++G A G+ W + RL+ E VA Sbjct: 299 ERFFLGSQWLYRLGTPAGDLMVLSPNDGRDALDEGHAAGIDWPAHCTRLLPAG---EAVA 355 Query: 361 A 361 A Sbjct: 356 A 356 >ref|YP_004152654.1| ABC transporter [Variovorax paradoxus EPS] gb|ADU34543.1| ABC transporter related protein [Variovorax paradoxus EPS] Length = 375 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 249/361 (68%), Positives = 288/361 (79%), Gaps = 5/361 (1%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 MSFL LT+V+KFYG T+AVS NL+VEKGEF+SLLGPSGCGKTTTLQMIAGFEAVS GRI Sbjct: 20 MSFLRLTDVTKFYGSTRAVSAMNLSVEKGEFVSLLGPSGCGKTTTLQMIAGFEAVSSGRI 79 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 EL G+DIT+AK NTRGLGIVFQ+YALFPHMTV NV+FGLEMRK AE+ DRV QAL+L Sbjct: 80 ELAGKDITNAKANTRGLGIVFQSYALFPHMTVADNVSFGLEMRKMPKAERADRVKQALAL 139 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 VHLE H RYPRELSGGQRQRVALARALVI PPVLLLDEPLSNLDAKLREEMQFELR IQ Sbjct: 140 VHLEPHATRYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAKLREEMQFELRQIQ 199 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLL 240 RKVGTTT+MVTHDQSEAMSISDRVVVME G TQ+ P VYEHP+ RFISTFVGKANLL Sbjct: 200 RKVGTTTVMVTHDQSEAMSISDRVVVMEGGCATQIDHPHRVYEHPSTRFISTFVGKANLL 259 Query: 241 EGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCNGEVV 300 G+V + ++ VG L+++ + G + G V+L +RPEK++ G+GR +G V Sbjct: 260 NGRVTACSTGSCNVEVGP--LAVQVDEDGFKSGAAVLLSVRPEKLQLVTAGRGRLDGTVQ 317 Query: 301 RRFFLGSQWMYEVETPLGLLSVLSANDGAEALEQGAAVGLAWSDYSLRLVSTARSDEGVA 360 RFFLGSQW+Y + TP G L VLS NDG +AL++G AVG+ W + RL+ ++E VA Sbjct: 318 ERFFLGSQWLYRIATPAGDLMVLSPNDGRDALDEGNAVGIDWPAHCTRLLP---AEEAVA 374 Query: 361 A 361 A Sbjct: 375 A 375 >ref|YP_522168.1| ABC transporter-like protein [Rhodoferax ferrireducens T118] gb|ABD68637.1| ABC transporter related [Rhodoferax ferrireducens T118] Length = 368 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 246/350 (70%), Positives = 276/350 (78%), Gaps = 3/350 (0%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 MSFL L NV+KFYG T AVS NLTVEKGEF+SLLGPSGCGKTTTLQM+AGFE+VS G I Sbjct: 9 MSFLQLNNVTKFYGSTCAVSAMNLTVEKGEFVSLLGPSGCGKTTTLQMVAGFESVSSGSI 68 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 ELDGRDITHAK NTRGLGIVFQTYALFPHMTV NV+FGLEMRK AE+ +RV QAL+L Sbjct: 69 ELDGRDITHAKANTRGLGIVFQTYALFPHMTVADNVSFGLEMRKMPKAERSERVKQALAL 128 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 VHLE RYPRELSGGQRQRVALARALVI PPVLLLDEPLSNLDAKLREEMQFELR IQ Sbjct: 129 VHLEALAQRYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAKLREEMQFELRKIQ 188 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLL 240 RKVGTTT+MVTHDQSEAMSISDRVVVME G TQ+ P +VYEHP R ISTFVGKANLL Sbjct: 189 RKVGTTTVMVTHDQSEAMSISDRVVVMEGGCATQIDNPHSVYEHPRTRSISTFVGKANLL 248 Query: 241 EGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCNGEVV 300 G VV G + + +G + + ++ D+G G V+L +RPEK++ GQGR +G V Sbjct: 249 TGHVV-TGGAKTRVNLGSIEVDVD--DAGFHHGTLVLLSVRPEKLQLREAGQGRLDGTVR 305 Query: 301 RRFFLGSQWMYEVETPLGLLSVLSANDGAEALEQGAAVGLAWSDYSLRLV 350 RFFLGSQW+Y V T LG LSVLS NDG AL++G G+ W + RL+ Sbjct: 306 ERFFLGSQWLYTVNTALGELSVLSPNDGRPALDEGHLAGIDWPTHCTRLL 355 >ref|YP_550739.1| ABC transporter-like protein [Polaromonas sp. JS666] gb|ABE45841.1| ABC transporter related protein [Polaromonas sp. JS666] Length = 366 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 243/353 (68%), Positives = 273/353 (77%), Gaps = 3/353 (0%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 MSFLTL NV+K YG T AV NL+VEKGEF+SLLGPSGCGKTTTLQMIAGF V+ GRI Sbjct: 1 MSFLTLANVNKSYGATHAVIDMNLSVEKGEFVSLLGPSGCGKTTTLQMIAGFADVTAGRI 60 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 LDGRDITHAKPNTRGLGIVFQ+YALFPHM+V NV+FGLEMR+ E+ +RV AL+L Sbjct: 61 TLDGRDITHAKPNTRGLGIVFQSYALFPHMSVHDNVSFGLEMRRMPKNERTERVKAALAL 120 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 VHLE H RYPRELSGGQRQRVALARALVI PPVLLLDEPLSNLDAKLREEMQFELR IQ Sbjct: 121 VHLEAHATRYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAKLREEMQFELRQIQ 180 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLL 240 RKVGTTT+MVTHDQ+EAMSISDRVVVMEAG +TQ+ +P +YEHP RFIS+FVGKANLL Sbjct: 181 RKVGTTTVMVTHDQTEAMSISDRVVVMEAGRVTQIDQPHRLYEHPQTRFISSFVGKANLL 240 Query: 241 EGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCNGEVV 300 EG+V+ A G A + +G SLE G G VVL LRPEKIR +GR G V Sbjct: 241 EGRVI-ATGAWATVDLG--TASLEVHAPGAAVGDAVVLSLRPEKIRLVPETRGRLAGAVC 297 Query: 301 RRFFLGSQWMYEVETPLGLLSVLSANDGAEALEQGAAVGLAWSDYSLRLVSTA 353 RFFLGSQW+Y+V+T G L V+ NDG E+G VGL W +RL+ A Sbjct: 298 ERFFLGSQWLYQVDTAAGELVVVCPNDGEVPAEEGQRVGLDWPAGQVRLLPGA 350 >ref|ZP_08874188.1| ABC transporter-like protein [Verminephrobacter sp. At4] Length = 359 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 240/350 (68%), Positives = 272/350 (77%), Gaps = 3/350 (0%) Query: 1 MSFLTLTNVSKFYGDTQAVSGFNLTVEKGEFISLLGPSGCGKTTTLQMIAGFEAVSGGRI 60 MSFL LT+V+KFYG+T AVS NLTVEKGEF+SLLGPSGCGKTTTLQM+AGFEAV+ GRI Sbjct: 1 MSFLELTDVTKFYGNTCAVSAMNLTVEKGEFVSLLGPSGCGKTTTLQMVAGFEAVTSGRI 60 Query: 61 ELDGRDITHAKPNTRGLGIVFQTYALFPHMTVEQNVAFGLEMRKCGAAEKRDRVAQALSL 120 LDGRDITHAK N RGLGIVFQ+YALF HMTV NV FGLEMRK E+R+RVAQAL+L Sbjct: 61 TLDGRDITHAKANVRGLGIVFQSYALFAHMTVAGNVGFGLEMRKLPKTEQRERVAQALAL 120 Query: 121 VHLEKHGARYPRELSGGQRQRVALARALVIAPPVLLLDEPLSNLDAKLREEMQFELRDIQ 180 VHLE+H +RYPRELSGGQRQRVALARALVI PPVLLLDEPLSNLDA+LREEMQFELR IQ Sbjct: 121 VHLEQHASRYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAQLREEMQFELRQIQ 180 Query: 181 RKVGTTTIMVTHDQSEAMSISDRVVVMEAGHITQVGRPLNVYEHPANRFISTFVGKANLL 240 R+VG TT+MVTHDQSEAMSISDRVVVMEAG Q G P VYEHP RFISTFVGK NLL Sbjct: 181 RRVGATTVMVTHDQSEAMSISDRVVVMEAGRAMQTGHPHRVYEHPGTRFISTFVGKTNLL 240 Query: 241 EGQVVGAAGERADIAVGGMMLSLESTDSGLRGGGRVVLGLRPEKIRCTAPGQGRCNGEVV 300 G V A+G V L+++ G V+L LRPEK+ C GR +G+V Sbjct: 241 PGTVT-ASGAHTHTHVALGPLAVQVDGPRFLPGTAVLLSLRPEKLHCVP--AGRIDGQVR 297 Query: 301 RRFFLGSQWMYEVETPLGLLSVLSANDGAEALEQGAAVGLAWSDYSLRLV 350 RFFLGSQW+Y V T +G L VL+ NDG +AL +G G+ W D+ +RL+ Sbjct: 298 ERFFLGSQWLYRVGTAVGDLMVLAPNDGRDALSEGERTGVDWPDHCMRLL 347