BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0127.p (360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942236.1| binding-protein-dependent transport systems ... 322 5e-86 ref|YP_004152653.1| binding-protein-dependent transport systems ... 311 2e-82 ref|YP_550738.1| binding-protein-dependent transport systems inn... 309 5e-82 ref|YP_995557.1| binding-protein-dependent transport systems inn... 306 4e-81 ref|YP_522167.1| binding-protein-dependent transport systems inn... 302 5e-80 >ref|YP_002942236.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS16970.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 283 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 183/241 (75%), Positives = 208/241 (86%) Query: 26 RSLPWLMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPYYY 85 ++ PW +S PA+LL +L+VPL LT VLSFN YD TGPKAG FTL HY V TD YY+ Sbjct: 4 KATPWWLSGPALLLFAALLVVPLALTAVLSFNVYDPATGPKAGEFTLAHYAQVFTDSYYH 63 Query: 86 GIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGWSM 145 GIFWRT WIS LVTLIC++VGAPEA++L+RMR PWRS++LLVVLAPL++SVVVRAFGWSM Sbjct: 64 GIFWRTFWISALVTLICVLVGAPEAYVLSRMRNPWRSVLLLVVLAPLLVSVVVRAFGWSM 123 Query: 146 LLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVANAA 205 LLGPEG +NG L +G VK+LYTETA+++ALVHVMLPFMVIPVWTSLQKLD GV NAA Sbjct: 124 LLGPEGAVNGLLRLVGIGPVKMLYTETAVIVALVHVMLPFMVIPVWTSLQKLDAGVENAA 183 Query: 206 LSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGRRLKMMATTVYDEY 265 LSL ASP T LRRIVLPQ+MPGILSGSLIVFGL+ASSFAIPGLLGGRRLKM+AT VYDEY Sbjct: 184 LSLRASPFTTLRRIVLPQVMPGILSGSLIVFGLAASSFAIPGLLGGRRLKMVATVVYDEY 243 Query: 266 L 266 L Sbjct: 244 L 244 >ref|YP_004152653.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU34542.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 286 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 184/241 (76%), Positives = 208/241 (86%) Query: 26 RSLPWLMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPYYY 85 ++ PW +S PA+LL T +LLVPL+LT VLSFN YD TGPKAG FTL HY V TD YY+ Sbjct: 7 KAAPWWLSGPALLLFTALLLVPLLLTAVLSFNVYDPATGPKAGEFTLAHYAHVFTDSYYH 66 Query: 86 GIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGWSM 145 GIFWRT WIS LVTLIC+V+GAPEA++L+RMR PWRSI+LLVVLAPL++SVVVRAFGWSM Sbjct: 67 GIFWRTFWISALVTLICVVIGAPEAYVLSRMRNPWRSILLLVVLAPLLVSVVVRAFGWSM 126 Query: 146 LLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVANAA 205 LLGPEG +N L +G VK+LYTE A+++ALVHVMLPFMVIPVWTSLQKLD GV NAA Sbjct: 127 LLGPEGAVNSLLGLVGIGPVKMLYTEIAVIVALVHVMLPFMVIPVWTSLQKLDAGVENAA 186 Query: 206 LSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGRRLKMMATTVYDEY 265 LSL ASP T LRRIVLPQ+MPGILSGSLIVFGL+ASSFAIPGLLGGRRLKM+AT VYDEY Sbjct: 187 LSLKASPFTTLRRIVLPQVMPGILSGSLIVFGLAASSFAIPGLLGGRRLKMVATVVYDEY 246 Query: 266 L 266 L Sbjct: 247 L 247 >ref|YP_550738.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] gb|ABE45840.1| binding-protein-dependent transport systems inner membrane component [Polaromonas sp. JS666] Length = 292 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 174/254 (68%), Positives = 208/254 (81%), Gaps = 1/254 (0%) Query: 13 VVSAAASDKAPGQRSLPWLMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTL 72 +V AA + P PWL+SAPA +L +LLVPL LT VLSF +D TG K +FTL Sbjct: 1 MVGAAPNVSRPSAARAPWLLSAPAFVLFACLLLVPLALTAVLSFQVFDHATGVK-NSFTL 59 Query: 73 EHYTAVLTDPYYYGIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPL 132 HY AVLTD YY+ IFWRT W+S L TLIC++VGAPEA++L+RMR PWRS++LLVVLAPL Sbjct: 60 AHYAAVLTDDYYHRIFWRTFWVSALTTLICVLVGAPEAYVLSRMRNPWRSVLLLVVLAPL 119 Query: 133 MISVVVRAFGWSMLLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWT 192 ++SVVVRAFGWSMLLGPEG++N + A+G +++LYTE A+VIALVHVMLPFMVIPVWT Sbjct: 120 LVSVVVRAFGWSMLLGPEGVVNQAVRAMGLPPMRILYTEAAVVIALVHVMLPFMVIPVWT 179 Query: 193 SLQKLDGGVANAALSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGR 252 SLQKLD GV +AALSL AS T +RRI+ PQ++PG+LSGSLIVFGLSAS+FAIPGLLGGR Sbjct: 180 SLQKLDPGVEDAALSLKASHFTTVRRIIFPQVLPGVLSGSLIVFGLSASAFAIPGLLGGR 239 Query: 253 RLKMMATTVYDEYL 266 RLKM+AT VYDEYL Sbjct: 240 RLKMVATVVYDEYL 253 >ref|YP_995557.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56539.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 286 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 179/241 (74%), Positives = 209/241 (86%) Query: 26 RSLPWLMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPYYY 85 R++PW +S PA++L +LLVPL LT VLS N +D TG KAGTFTLEHY V TD YY+ Sbjct: 7 RAVPWWLSGPALVLFAALLLVPLALTAVLSLNMFDPATGVKAGTFTLEHYAQVFTDGYYH 66 Query: 86 GIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGWSM 145 IFWRT W++ LVTLIC+++GAPEAWIL+RM KPWR+I+LLVVLAPL++SVVVRAFGWS+ Sbjct: 67 AIFWRTFWMAALVTLICVLIGAPEAWILSRMGKPWRTILLLVVLAPLLVSVVVRAFGWSL 126 Query: 146 LLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVANAA 205 LLGPEGL+NG L +G VK+LYTE A+V+ALVHVMLPFMVIPVWTSLQKLD GV NAA Sbjct: 127 LLGPEGLVNGALQRIGIGPVKMLYTEIAVVVALVHVMLPFMVIPVWTSLQKLDPGVENAA 186 Query: 206 LSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGRRLKMMATTVYDEY 265 LSL A+P+T LRRIVLPQ++PGILSGSLIVFGL+ASSFAIPGLLGGRRLKM+AT VYDEY Sbjct: 187 LSLQATPLTTLRRIVLPQVLPGILSGSLIVFGLAASSFAIPGLLGGRRLKMVATVVYDEY 246 Query: 266 L 266 L Sbjct: 247 L 247 >ref|YP_522167.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] gb|ABD68636.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] Length = 284 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 187/243 (76%), Positives = 210/243 (86%) Query: 24 GQRSLPWLMSAPAILLCTVMLLVPLVLTFVLSFNAYDAETGPKAGTFTLEHYTAVLTDPY 83 ++ PW +S PA++L T +LLVPL+LT VLSFNAYD TG KAG FTLEHY V TD Y Sbjct: 3 ASKATPWWLSGPALVLFTALLLVPLLLTTVLSFNAYDPATGVKAGEFTLEHYAHVFTDDY 62 Query: 84 YYGIFWRTLWISGLVTLICIVVGAPEAWILNRMRKPWRSIMLLVVLAPLMISVVVRAFGW 143 YYGIFWRT WISGLVTLIC+ VGAPEA+IL+RM KPWRSI+LLVVLAPL++SVVVRAFGW Sbjct: 63 YYGIFWRTFWISGLVTLICVAVGAPEAYILSRMGKPWRSILLLVVLAPLLVSVVVRAFGW 122 Query: 144 SMLLGPEGLINGTLVALGFAKVKLLYTETAIVIALVHVMLPFMVIPVWTSLQKLDGGVAN 203 SMLLGPEGL+N L +G V++LYTE A+V+ALVHVMLPFMVIPVWTSLQKLD GV N Sbjct: 123 SMLLGPEGLVNSGLKLVGLGPVRMLYTEVAVVVALVHVMLPFMVIPVWTSLQKLDPGVEN 182 Query: 204 AALSLGASPITVLRRIVLPQIMPGILSGSLIVFGLSASSFAIPGLLGGRRLKMMATTVYD 263 AALSL ASP T LRRIVLPQ++PGILSGSLIVFGLSAS+FAIPGLLGGRRLKM+AT VYD Sbjct: 183 AALSLRASPFTTLRRIVLPQVLPGILSGSLIVFGLSASAFAIPGLLGGRRLKMVATVVYD 242 Query: 264 EYL 266 EYL Sbjct: 243 EYL 245