BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0125.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_522166.1| binding-protein-dependent transport systems inn... 359 2e-97 ref|YP_002942235.1| binding-protein-dependent transport systems ... 359 2e-97 ref|YP_004152652.1| binding-protein-dependent transport systems ... 355 3e-96 ref|YP_995556.1| binding-protein-dependent transport systems inn... 355 5e-96 ref|ZP_08874186.1| binding-protein-dependent transport systems i... 342 5e-92 >ref|YP_522166.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] gb|ABD68635.1| binding-protein-dependent transport systems inner membrane component [Rhodoferax ferrireducens T118] Length = 263 Score = 359 bits (922), Expect = 2e-97, Method: Composition-based stats. Identities = 210/263 (79%), Positives = 236/263 (89%) Query: 1 MNKNGPIALCFNALVILFTLAPILVVCVIAFTPENTLTMNGPEFSLRWFKAVFEFPDFVS 60 M KNGP+AL FNALVI F LAP+LVVCV+AFTPENTLT+ FSLRWF+AVF PDF+ Sbjct: 1 MRKNGPLALLFNALVIAFMLAPLLVVCVVAFTPENTLTLPTSRFSLRWFEAVFAHPDFMQ 60 Query: 61 SFWNSLWLALAAATISTALAIPAAMALVRYPHRWSGVLQGLFLSPLIIPHLVLGVALLRL 120 SFWNSLWLALA+AT++T LA+PA MA+ RY G L GLFLSPLIIPHLVLGVALLRL Sbjct: 61 SFWNSLWLALASATLATLLAVPAGMAITRYTFPGRGFLNGLFLSPLIIPHLVLGVALLRL 120 Query: 121 FSVVGGAGSFGWLVLAHSLVVTPYTMRLIMAALIGFDRSAEHAALSLGATRSTVFLRITL 180 F++VGG GSFGWLVLAH+L+VTPYT+RL++AAL+GFDRSAE AALSLGA+++ +F RITL Sbjct: 121 FALVGGTGSFGWLVLAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQTQMFTRITL 180 Query: 181 PMILPGITGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPMMAAVSALMV 240 PMILPG+TGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDP+MAAVSALMV Sbjct: 181 PMILPGVTGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV 240 Query: 241 GITAVAMIILDRVYGLDRVLVGR 263 +TA AMIILDRVYGLDRVLVGR Sbjct: 241 AVTAFAMIILDRVYGLDRVLVGR 263 >ref|YP_002942235.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS16969.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 264 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 206/263 (78%), Positives = 237/263 (90%) Query: 1 MNKNGPIALCFNALVILFTLAPILVVCVIAFTPENTLTMNGPEFSLRWFKAVFEFPDFVS 60 M KNGP+AL FNALVI F LAP++VVC++AFTPENTLT+ FSLRWF+AVF PDF+ Sbjct: 1 MTKNGPLALAFNALVITFMLAPLVVVCIVAFTPENTLTIPTTHFSLRWFEAVFAHPDFMQ 60 Query: 61 SFWNSLWLALAAATISTALAIPAAMALVRYPHRWSGVLQGLFLSPLIIPHLVLGVALLRL 120 SFWNSLWLALA+ATI+T LA+PA MA+ RY L GLFLSPLIIPHLVLGVALLRL Sbjct: 61 SFWNSLWLALASATIATLLAVPAGMAITRYTFPGRDFLNGLFLSPLIIPHLVLGVALLRL 120 Query: 121 FSVVGGAGSFGWLVLAHSLVVTPYTMRLIMAALIGFDRSAEHAALSLGATRSTVFLRITL 180 F++VGG GSFGWLV+AH+L+VTPYT+RL++AAL+GFDRSAE AALSLGA+++TVF RITL Sbjct: 121 FALVGGTGSFGWLVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATVFRRITL 180 Query: 181 PMILPGITGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPMMAAVSALMV 240 PMILPG+TGGWLL+FINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDP+MAAVSALMV Sbjct: 181 PMILPGVTGGWLLSFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV 240 Query: 241 GITAVAMIILDRVYGLDRVLVGR 263 +TA+AM++LDRVYGLDRVLVGR Sbjct: 241 AVTAIAMVVLDRVYGLDRVLVGR 263 >ref|YP_004152652.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU34541.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 264 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 206/263 (78%), Positives = 235/263 (89%) Query: 1 MNKNGPIALCFNALVILFTLAPILVVCVIAFTPENTLTMNGPEFSLRWFKAVFEFPDFVS 60 M+KNGP AL FNALVI F LAP+LVVC++AFTPENTLT+ FSLRWF AVF PDF+ Sbjct: 1 MSKNGPFALAFNALVITFMLAPLLVVCIVAFTPENTLTIPTTSFSLRWFAAVFAHPDFMQ 60 Query: 61 SFWNSLWLALAAATISTALAIPAAMALVRYPHRWSGVLQGLFLSPLIIPHLVLGVALLRL 120 SFWNSLWLALA+ATI+T LA+PA MA+ RY L LFLSPLIIPHLVLGVALLRL Sbjct: 61 SFWNSLWLALASATIATLLAVPAGMAITRYEFPGRDFLNALFLSPLIIPHLVLGVALLRL 120 Query: 121 FSVVGGAGSFGWLVLAHSLVVTPYTMRLIMAALIGFDRSAEHAALSLGATRSTVFLRITL 180 F++VGG GSFGWLV+AH+L+VTPYT+RL++AAL+GFDRSAE AALSLGA+++TVF RITL Sbjct: 121 FALVGGTGSFGWLVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATVFRRITL 180 Query: 181 PMILPGITGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPMMAAVSALMV 240 PMILPG+TGGW+LAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDP+MAAVSALMV Sbjct: 181 PMILPGVTGGWMLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV 240 Query: 241 GITAVAMIILDRVYGLDRVLVGR 263 +TA+AM+ILDR+YGLDRVLVGR Sbjct: 241 AVTAIAMVILDRLYGLDRVLVGR 263 >ref|YP_995556.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56538.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 264 Score = 355 bits (910), Expect = 5e-96, Method: Composition-based stats. Identities = 202/263 (76%), Positives = 233/263 (88%) Query: 1 MNKNGPIALCFNALVILFTLAPILVVCVIAFTPENTLTMNGPEFSLRWFKAVFEFPDFVS 60 M KNGPIAL FNALVI F LAP+L VC++AFTP +TLT+ FSLRWF+AVFE PDFV Sbjct: 1 MPKNGPIALAFNALVIAFMLAPLLGVCLVAFTPHDTLTLPTTGFSLRWFRAVFEHPDFVQ 60 Query: 61 SFWNSLWLALAAATISTALAIPAAMALVRYPHRWSGVLQGLFLSPLIIPHLVLGVALLRL 120 SFWNSLWLALA+AT++T LA+PA +A+ RY G L GLFLSPLIIPHLVLGVALLRL Sbjct: 61 SFWNSLWLALASATLATVLAVPAGIAMTRYMFPGRGWLNGLFLSPLIIPHLVLGVALLRL 120 Query: 121 FSVVGGAGSFGWLVLAHSLVVTPYTMRLIMAALIGFDRSAEHAALSLGATRSTVFLRITL 180 F+++ G G FGWLVLAH+L++TPYT+RL+ AAL+GFDRSAEHAALSLGA+++TVF RITL Sbjct: 121 FALIDGTGHFGWLVLAHALIITPYTLRLVAAALVGFDRSAEHAALSLGASQATVFRRITL 180 Query: 181 PMILPGITGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPMMAAVSALMV 240 PMI PG+TGGW+LAFINSFDEVT+SIFVTSPSTVTLPVRMYMYATESIDP+MAAVSALMV Sbjct: 181 PMIAPGVTGGWMLAFINSFDEVTLSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV 240 Query: 241 GITAVAMIILDRVYGLDRVLVGR 263 +TA AM++LDRVYGLDRVLVGR Sbjct: 241 ALTACAMVLLDRVYGLDRVLVGR 263 >ref|ZP_08874186.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter sp. At4] Length = 264 Score = 342 bits (876), Expect = 5e-92, Method: Composition-based stats. Identities = 205/264 (77%), Positives = 238/264 (90%) Query: 1 MNKNGPIALCFNALVILFTLAPILVVCVIAFTPENTLTMNGPEFSLRWFKAVFEFPDFVS 60 M KNGPIAL FNALVI F LAP+L+VC +AFTP +TLT+ G SLRWFKAVFE PDFV Sbjct: 1 MQKNGPIALAFNALVIGFMLAPLLMVCAVAFTPHDTLTLPGTALSLRWFKAVFEHPDFVQ 60 Query: 61 SFWNSLWLALAAATISTALAIPAAMALVRYPHRWSGVLQGLFLSPLIIPHLVLGVALLRL 120 SFWNSLWLALA+AT++TALA+PA +AL RY G+L GLFLSPLIIPHL+LGVALLRL Sbjct: 61 SFWNSLWLALASATLATALAVPAGIALTRYAFAGRGLLNGLFLSPLIIPHLILGVALLRL 120 Query: 121 FSVVGGAGSFGWLVLAHSLVVTPYTMRLIMAALIGFDRSAEHAALSLGATRSTVFLRITL 180 F+++GG GSFGWLV AH+L+VTPYT+RL++AAL+GF+RSAEHAALSLGA+++TVF RITL Sbjct: 121 FTLIGGTGSFGWLVAAHALIVTPYTLRLVVAALVGFERSAEHAALSLGASQATVFTRITL 180 Query: 181 PMILPGITGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPMMAAVSALMV 240 PMILPG+TGGWLLAFINSFDEVT+SIFVTSPSTVTLPVRMYM+A ESIDP+MAAVSALMV Sbjct: 181 PMILPGVTGGWLLAFINSFDEVTLSIFVTSPSTVTLPVRMYMHAVESIDPLMAAVSALMV 240 Query: 241 GITAVAMIILDRVYGLDRVLVGRS 264 +TA AM++LDRVYGLDRVLVGR+ Sbjct: 241 ALTACAMVLLDRVYGLDRVLVGRT 264