BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0124.p (483 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_522164.1| BFD-like protein (2Fe-2S)-binding protein [Rhod... 568 e-160 ref|YP_002942233.1| BFD domain-containing protein (2Fe-2S)-bindi... 540 e-151 ref|YP_004152650.1| bfd domain-containing protein (2fe-2S)-bindi... 536 e-150 ref|YP_550735.1| BFD-like protein [Polaromonas sp. JS666] >gi|91... 535 e-150 ref|ZP_07263994.1| FAD-dependent pyridine nucleotide-disulphide ... 535 e-150 >ref|YP_522164.1| BFD-like protein (2Fe-2S)-binding protein [Rhodoferax ferrireducens T118] gb|ABD68633.1| BFD-like (2Fe-2S)-binding protein [Rhodoferax ferrireducens T118] Length = 464 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 310/462 (67%), Positives = 364/462 (78%), Gaps = 10/462 (2%) Query: 6 PVIVGAGPAGVRAAQTLLAHGVRPIVIDEAAQAGGQIYRQPPRGFLRSRKTLYGFEASRA 65 PV+VGAGPAGVRAAQTL+A+GVRP+V+DEA +AGGQIYR+PP F R +TLYGFEA+RA Sbjct: 8 PVVVGAGPAGVRAAQTLVAYGVRPVVVDEAPRAGGQIYRRPPSNFKRPAQTLYGFEAARA 67 Query: 66 QSVHSTFHALREAIDYRPNTLVWNAQPGLLDLMDGGAQSASTLAWEDIIVATGATDRVLP 125 +VHSTF L IDYRP++LVWNAQ GLLD++ G Q+ L ++ +IVATGATDRVLP Sbjct: 68 LAVHSTFDTLTNQIDYRPDSLVWNAQSGLLDVLHGPTQTTQRLPYQQLIVATGATDRVLP 127 Query: 126 FPGWTTPGVYTLGGSQVALKFQGCAIGRSVVLAGNGPLLYLVAYQYAKAGARVAAVLDSS 185 PGWT PGVYTLGG+QVALKFQGCAIGR VV G GPLLYLVAYQYAKAG VAAVLD++ Sbjct: 128 IPGWTLPGVYTLGGAQVALKFQGCAIGRQVVFMGTGPLLYLVAYQYAKAGVNVAAVLDTA 187 Query: 186 SLADRIAALPSMLGQPALLAKGIYYLAWLKLHGVPVHSHARVLRVEGDARVQALVWRREN 245 L+D+++A+P++L QPA+L KG+YY+AWL+ GV +HS R L V G RVQA+VW Sbjct: 188 RLSDQLSAMPALLTQPAVLFKGMYYVAWLRAQGVVLHSGVRPLHVLGQTRVQAVVWHDGE 247 Query: 246 LASASGKPGPEQRIECDAVGFGYALRSETQLADLLGCRFQFDGLQRAHLPVRDKSTRSSV 305 E + CDA+GFGYALRSETQLADLLGC+F FD LQR+HLP RD + R+SV Sbjct: 248 ---------KELTLACDAIGFGYALRSETQLADLLGCQFAFDPLQRSHLPERDGAGRASV 298 Query: 306 PGVYLAGDGAGIMGADAAELAGERAALALLQDRGIAVDAARVAQIEAALARIGAFRLGLE 365 GVYLAGDGAGIMGADAAE AGE AALALL D G+AVD+AR +E L ++ FR GLE Sbjct: 299 AGVYLAGDGAGIMGADAAEWAGELAALALLTDNGVAVDSARARVLEQKLRQLRRFRTGLE 358 Query: 366 RAFPFPERWAATASDDLVICRCENIRAGELRAAVREKGAAEMNRLKALTRVGMGRCQGRM 425 RAFPFP+ WAA A DDLV+CRCENI AGELR + GA E+NRLKALTRVGMGRCQGR+ Sbjct: 359 RAFPFPQNWAAQAPDDLVVCRCENITAGELRRTAQTSGADELNRLKALTRVGMGRCQGRI 418 Query: 426 CGAAAAEILAHAASLPVQEVGRLRGQAPIKPIPLGM-HVPAP 466 CG AAAEILA A V++VGRLRGQAPIKPIP+ + H AP Sbjct: 419 CGVAAAEILAQATGQSVEQVGRLRGQAPIKPIPIHLVHASAP 460 >ref|YP_002942233.1| BFD domain-containing protein (2Fe-2S)-binding domain-containing protein [Variovorax paradoxus S110] gb|ACS16967.1| BFD domain protein (2Fe-2S)-binding domain protein [Variovorax paradoxus S110] Length = 472 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 315/456 (69%), Positives = 364/456 (79%), Gaps = 9/456 (1%) Query: 6 PVIVGAGPAGVRAAQTLLAHGVRPIVIDEAAQAGGQIYRQPPRGFL-RSRKTLYGFEASR 64 PVIVGAGPAGVRAAQ L+AHG+RP+VIDEA++AGGQIYRQPP RS + LYGFEA R Sbjct: 11 PVIVGAGPAGVRAAQALVAHGLRPVVIDEASRAGGQIYRQPPASLAQRSAQALYGFEAGR 70 Query: 65 AQSVHSTFHALREAIDYRPNTLVWNAQPGLLDLMDGGAQSASTLAWEDIIVATGATDRVL 124 A ++H+ F +LRE IDYRP++LVWNAQ G LD++ G +S S+L++ +IVATGATDRVL Sbjct: 71 ADALHAAFDSLRERIDYRPDSLVWNAQGGRLDVLHGPTRSTSSLSYGQLIVATGATDRVL 130 Query: 125 PFPGWTTPGVYTLGGSQVALKFQGCAIGRSVVLAGNGPLLYLVAYQYAKAGARVAAVLDS 184 P PGWT PGVYTLGG+QVALKFQGCAIG VV G GPLLYLVAYQYAKAGA+V AVLD+ Sbjct: 131 PVPGWTLPGVYTLGGAQVALKFQGCAIGERVVFMGTGPLLYLVAYQYAKAGAKVIAVLDT 190 Query: 185 SSLADRIAALPSMLGQPALLAKGIYYLAWLKLHGVPVHSHARVLRVEGDARVQALVWRRE 244 + LAD++AA P+ML QPA+ AKG+YY+AWL+ HGV +H R LRV GDA+ Sbjct: 191 ARLADQLAATPAMLRQPAVFAKGVYYVAWLRAHGVALHGGVRPLRVLGDAQ-------ES 243 Query: 245 NLASASGKPGPEQR-IECDAVGFGYALRSETQLADLLGCRFQFDGLQRAHLPVRDKSTRS 303 +A + G E+R + CDAVGFGYALRSETQLADLLGCRF + L RAHLPVRD + RS Sbjct: 244 RVAGVAWHDGREERTLACDAVGFGYALRSETQLADLLGCRFDYAPLHRAHLPVRDAAGRS 303 Query: 304 SVPGVYLAGDGAGIMGADAAELAGERAALALLQDRGIAVDAARVAQIEAALARIGAFRLG 363 SV GVYLAGDGAGIMGADAAE AGERAALALL D G+AVD AR A++E L ++ FR G Sbjct: 304 SVRGVYLAGDGAGIMGADAAEWAGERAALALLADNGVAVDVARAAELERKLGKLAGFREG 363 Query: 364 LERAFPFPERWAATASDDLVICRCENIRAGELRAAVREKGAAEMNRLKALTRVGMGRCQG 423 LERAFP P WAA A D+LV+CRCENI AG LR V GA EMNRLKAL+RVGMGRCQG Sbjct: 364 LERAFPVPRDWAAHAPDELVVCRCENITAGTLRQTVAAAGADEMNRLKALSRVGMGRCQG 423 Query: 424 RMCGAAAAEILAHAASLPVQEVGRLRGQAPIKPIPL 459 RMCGAAAAEILA A LP+Q+VGRLRGQAPIKPIP+ Sbjct: 424 RMCGAAAAEILAQATGLPLQQVGRLRGQAPIKPIPI 459 >ref|YP_004152650.1| bfd domain-containing protein (2fe-2S)-binding domain-containing protein [Variovorax paradoxus EPS] gb|ADU34539.1| BFD domain protein (2Fe-2S)-binding domain protein [Variovorax paradoxus EPS] Length = 470 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 315/465 (67%), Positives = 368/465 (79%), Gaps = 15/465 (3%) Query: 6 PVIVGAGPAGVRAAQTLLAHGVRPIVIDEAAQAGGQIYRQPPRGFL-RSRKTLYGFEASR 64 PVIVGAGPAGVRAA+ L+AHG+RP+VIDEA++AGGQIYR+PP F+ R+ TLYGFEASR Sbjct: 9 PVIVGAGPAGVRAAEALVAHGLRPLVIDEASRAGGQIYRRPPANFIQRTAATLYGFEASR 68 Query: 65 AQSVHSTFHALREAIDYRPNTLVWNAQPGLLDLMDGGAQSASTLAWEDIIVATGATDRVL 124 A +VH F L + IDYRP++LVWNAQ G+LD++ ++ + + +IVATGATDRVL Sbjct: 69 ANAVHLAFDTLHDHIDYRPDSLVWNAQGGMLDVLHNPTRTTTRVPHGALIVATGATDRVL 128 Query: 125 PFPGWTTPGVYTLGGSQVALKFQGCAIGRSVVLAGNGPLLYLVAYQYAKAGARVAAVLDS 184 P PGWT PGVYTLGG+QVALKFQGCAIG+ VV G GPLLYLVAYQYAKAGA+VAAVLD+ Sbjct: 129 PVPGWTLPGVYTLGGAQVALKFQGCAIGQRVVFMGTGPLLYLVAYQYAKAGAKVAAVLDT 188 Query: 185 SSLADRIAALPSMLGQPALLAKGIYYLAWLKLHGVPVHSHARVLRVEGD---ARVQALVW 241 + LAD+IAA P+ML QPA+ AKG+Y++AWL+ HGVP+HS R LRV GD RV + W Sbjct: 189 ARLADQIAATPAMLRQPAVFAKGVYFVAWLRAHGVPLHSGVRPLRVIGDDEARRVTGVAW 248 Query: 242 RRENLASASGKPGPEQR-IECDAVGFGYALRSETQLADLLGCRFQFDGLQRAHLPVRDKS 300 G E+R + CDAVGFGYALRSETQLADLLGCRF+F + RAHLPVRD + Sbjct: 249 ----------NDGREERTLACDAVGFGYALRSETQLADLLGCRFEFAPMHRAHLPVRDAA 298 Query: 301 TRSSVPGVYLAGDGAGIMGADAAELAGERAALALLQDRGIAVDAARVAQIEAALARIGAF 360 R+SV GVYLAGDGAGIMGADAAE AGERAALALL DRG+A+DAAR A +EA L + F Sbjct: 299 GRASVEGVYLAGDGAGIMGADAAEWAGERAALALLADRGVAIDAARAAALEAKLEGLMGF 358 Query: 361 RLGLERAFPFPERWAATASDDLVICRCENIRAGELRAAVREKGAAEMNRLKALTRVGMGR 420 R GLERAFP P WAA A DDLV+CRCEN+ AG LR + GA EMNRLKAL+RVGMGR Sbjct: 359 RRGLERAFPLPHDWAANAPDDLVVCRCENVTAGTLRQTIAVNGADEMNRLKALSRVGMGR 418 Query: 421 CQGRMCGAAAAEILAHAASLPVQEVGRLRGQAPIKPIPLGMHVPA 465 CQGRMCG AAAEILAHA P+Q+VGRLRGQAPIKPIP+ + V A Sbjct: 419 CQGRMCGVAAAEILAHATGQPLQQVGRLRGQAPIKPIPIQLAVHA 463 >ref|YP_550735.1| BFD-like protein [Polaromonas sp. JS666] gb|ABE45837.1| BFD-like (2Fe-2S)-binding region [Polaromonas sp. JS666] Length = 463 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 320/464 (68%), Positives = 366/464 (78%), Gaps = 15/464 (3%) Query: 1 MTRA-APVIVGAGPAGVRAAQTLLAHGVRPIVIDEAAQAGGQIYRQPPRGFLRSRKTLYG 59 MT+A PVIVGAGPAGVRAAQTL+AHGVRP+VIDEA + GGQIYRQPP GF RS++TLYG Sbjct: 1 MTKALQPVIVGAGPAGVRAAQTLVAHGVRPVVIDEAPRWGGQIYRQPPPGFTRSKRTLYG 60 Query: 60 FEASRAQSVHSTFHALREAIDYRPNTLVWNAQPGLLDLMDGGAQSASTLAWEDIIVATGA 119 FEA RA+++HS + + +DYRP TLVW+A+ G LDL+ G TL + +I+ATGA Sbjct: 61 FEAGRAEALHSAMANILDRVDYRPETLVWSAEGGRLDLLCRG--RMGTLPYGQLILATGA 118 Query: 120 TDRVLPFPGWTTPGVYTLGGSQVALKFQGCAIGRSVVLAGNGPLLYLVAYQYAKAGARVA 179 TDRVLPFPGWT PGVYTLG +QVALK+QGCAIG VV+AG GPLLYLVAYQYAKAGARV Sbjct: 119 TDRVLPFPGWTLPGVYTLGAAQVALKYQGCAIGSRVVIAGTGPLLYLVAYQYAKAGARVV 178 Query: 180 AVLDSSSLADRIAALPSMLGQPALLAKGIYYLAWLKLHGVPVHSHARVLRVEGDARVQAL 239 AVLD++S D+ A P+ML QPA+ AKG+YYL WL+ HGVPVH R++R GDARV A+ Sbjct: 179 AVLDTASFKDKALAAPAMLRQPAVFAKGVYYLGWLRAHGVPVHQGVRLVRATGDARVTAM 238 Query: 240 VWRRENLASASGKPGPEQRIECDAVGFGYALRSETQLADLLGCRFQFDGLQRAHLPVRDK 299 WR A A+ E + CDAVGFGYALRSETQLADLLGCRF ++ LQRA LP RD Sbjct: 239 RWR----AGAT-----EHELACDAVGFGYALRSETQLADLLGCRFSYNALQRAALPERDG 289 Query: 300 STRSSVPGVYLAGDGAGIMGADAAELAGERAALALLQDRG---IAVDAARVAQIEAALAR 356 + RSSVPGVYLAGDGAGIMGADAAE AGERAALALL D G AVDAAR +++EA LAR Sbjct: 290 AGRSSVPGVYLAGDGAGIMGADAAEWAGERAALALLADAGKAVDAVDAARASELEAKLAR 349 Query: 357 IGAFRLGLERAFPFPERWAATASDDLVICRCENIRAGELRAAVREKGAAEMNRLKALTRV 416 AFR+GLERAFPFP+ WAA+A D+LVICRCE I AGELR V+ GA EMNRLKALTRV Sbjct: 350 TAAFRVGLERAFPFPQDWAASAPDELVICRCEEITAGELRQCVQNTGAREMNRLKALTRV 409 Query: 417 GMGRCQGRMCGAAAAEILAHAASLPVQEVGRLRGQAPIKPIPLG 460 GMGRCQGR CG AAAEILA A + VGRLRGQAPIKP+P Sbjct: 410 GMGRCQGRTCGVAAAEILAQACAAAPDAVGRLRGQAPIKPLPFA 453 >ref|ZP_07263994.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region [Pseudomonas syringae pv. syringae 642] Length = 463 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 286/470 (60%), Positives = 349/470 (74%), Gaps = 12/470 (2%) Query: 1 MTRAAPVIVGAGPAGVRAAQTLLAHGVRPIVIDEAAQAGGQIYRQPPRGFLRSRKTLYGF 60 M+ A I+GAGPAG+RAAQTLLAHG++ +IDE + GGQIYR+ P F RS K LYGF Sbjct: 1 MSDQAIAIIGAGPAGIRAAQTLLAHGIKACLIDEGLRGGGQIYRRQPDNFQRSAKALYGF 60 Query: 61 EASRAQSVHSTFHALREAIDYRPNTLVWNAQPGLLDLMDGGAQSASTLAWEDIIVATGAT 120 E+++A +VH L IDYRP TLVWNA+ LD + G SA+TL + +IVATGAT Sbjct: 61 ESAKAVAVHEALDTLATQIDYRPQTLVWNAEDHQLDTLQNG--SAATLDFSQLIVATGAT 118 Query: 121 DRVLPFPGWTTPGVYTLGGSQVALKFQGCAIGRSVVLAGNGPLLYLVAYQYAKAGARVAA 180 DR+LP PGWT PGVY+LG +Q+ALK+QGCAIG+ VV G GPLLYLVAYQYAKAGA+V A Sbjct: 119 DRILPVPGWTLPGVYSLGAAQIALKYQGCAIGQRVVFCGTGPLLYLVAYQYAKAGAKVLA 178 Query: 181 VLDSSSLADRIAALPSMLGQPALLAKGIYYLAWLKLHGVPVHSHARVLRVEGDARVQALV 240 VLDS+ + + ALP++LGQPA LAKGIYY AWL HG+PVH A++ R++G+ RV + Sbjct: 179 VLDSAPFSAQCKALPALLGQPATLAKGIYYRAWLSAHGIPVHQGAQLTRIDGEKRVDGIQ 238 Query: 241 WRRENLASASGKPGPEQRIECDAVGFGYALRSETQLADLLGCRFQFDGLQRAHLPVRDKS 300 W+R +GK G R+ CDAV F +ALRSETQLADLLGC F + L RA LP RD Sbjct: 239 WQR------NGKSG---RLACDAVAFAHALRSETQLADLLGCEFAWSQLNRAWLPTRDDC 289 Query: 301 TRSSVPGVYLAGDGAGIMGADAAELAGERAALALLQDRGIAVDAARVAQIEAALARIGAF 360 RSSV G+YLAGDGAGIMGADAAE+AGE AAL LLQD G+ D AR+ ++ AL RI F Sbjct: 290 GRSSVSGIYLAGDGAGIMGADAAEMAGELAALGLLQDIGVGADTARIDTLKTALRRIERF 349 Query: 361 RLGLERAFPFPERWAATASDDLVICRCENIRAGELRAAVREKGAAEMNRLKALTRVGMGR 420 R GLE AFPFPE WAA +DD ++CRCE + AGE+R+AV++ G E+NR+KA+ RVGMGR Sbjct: 350 RHGLETAFPFPEDWAANVADDTLVCRCEEVSAGEIRSAVQD-GHWEINRVKAMCRVGMGR 408 Query: 421 CQGRMCGAAAAEILAHAASLPVQEVGRLRGQAPIKPIPLGMHVPAPEPVS 470 CQGRMCG AAAEI+A + LPV+ VGRLRGQAPIKP+P G+ E S Sbjct: 409 CQGRMCGLAAAEIIARESGLPVEHVGRLRGQAPIKPLPFGLDTQPMEKAS 458