BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0121.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773794.1| translation initiation factor IF-1 protein [...   164   4e-39
ref|ZP_03543947.1| translation initiation factor IF-1 [Comamonas...   125   2e-27
ref|YP_004234821.1| translation initiation factor IF-1 [Acidovor...   125   3e-27
ref|YP_283736.1| translation initiation factor 1 [Dechloromonas ...   124   4e-27
ref|YP_158042.1| translation initiation factor IF-1 [Aromatoleum...   124   5e-27

>ref|YP_003773794.1| translation initiation factor IF-1 protein [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ61886.1| translation initiation factor IF-1 protein [Herbaspirillum
          seropedicae SmR1]
          Length = 87

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/87 (97%), Positives = 86/87 (98%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY
Sbjct: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRPGFRRR 87
          DLNKGRIIFRHLE RGP+GPRPGFRRR
Sbjct: 61 DLNKGRIIFRHLENRGPTGPRPGFRRR 87


>ref|ZP_03543947.1| translation initiation factor IF-1 [Comamonas testosteroni KF-1]
 ref|YP_003277728.1| translation initiation factor IF-1 [Comamonas testosteroni CNB-2]
 ref|ZP_07045113.1| translation initiation factor IF-1 [Comamonas testosteroni S44]
 gb|EED68233.1| translation initiation factor IF-1 [Comamonas testosteroni KF-1]
 gb|ACY32432.1| translation initiation factor IF-1 [Comamonas testosteroni CNB-2]
 gb|EFI61376.1| translation initiation factor IF-1 [Comamonas testosteroni S44]
          Length = 85

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/82 (75%), Positives = 70/82 (85%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEELIEMQG V+EVLPDSRFRV LDNGH LIAYT G+M+K+ I+ILAGDKV+LE+SPY
Sbjct: 1  MAKEELIEMQGSVTEVLPDSRFRVTLDNGHQLIAYTGGKMRKHHIRILAGDKVSLEMSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRP 82
          DL KGRI FRHL  RGP+   P
Sbjct: 61 DLTKGRITFRHLANRGPAPTTP 82


>ref|YP_004234821.1| translation initiation factor IF-1 [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gb|ADX46254.1| translation initiation factor IF-1 [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 84

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/85 (76%), Positives = 72/85 (84%), Gaps = 1/85 (1%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEELIEMQG V+EVLPDSRFRV LDNGH LIAYT G+M+K+ I+ILAGDKV+LE+SPY
Sbjct: 1  MAKEELIEMQGSVTEVLPDSRFRVTLDNGHQLIAYTGGKMRKHHIRILAGDKVSLEMSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRPGFR 85
          DL KGRI FRHL  RGP GP  G R
Sbjct: 61 DLTKGRITFRHLPGRGP-GPSSGSR 84


>ref|YP_283736.1| translation initiation factor 1 [Dechloromonas aromatica RCB]
 sp|Q47IR5|IF12_DECAR RecName: Full=Translation initiation factor IF-1 2
 gb|AAZ45266.1| bacterial translation initiation factor 1 (bIF-1) [Dechloromonas
          aromatica RCB]
          Length = 87

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/86 (72%), Positives = 73/86 (84%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEEL+EMQG V++VLPD+RFRV L+NGH LIAYT+G+MKKN I+IL GDKVTLELSPY
Sbjct: 1  MAKEELLEMQGVVNDVLPDTRFRVTLENGHELIAYTSGKMKKNHIRILVGDKVTLELSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRPGFRR 86
          DL+KGRI FRH+E RG   P+   RR
Sbjct: 61 DLSKGRITFRHIENRGTPNPQAQRRR 86


>ref|YP_158042.1| translation initiation factor IF-1 [Aromatoleum aromaticum EbN1]
 sp|Q5P6C0|IF11_AZOSE RecName: Full=Translation initiation factor IF-1 1
 emb|CAI07141.1| translation initiation factor IF-1 [Aromatoleum aromaticum EbN1]
          Length = 85

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/87 (74%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 1  MAKEELIEMQGQVSEVLPDSRFRVALDNGHSLIAYTAGRMKKNFIKILAGDKVTLELSPY 60
          MAKEELIEM G V EVLPDSRFRV LDNGH+L+AY+AG+M+K+ I+IL GDKV+LELSPY
Sbjct: 1  MAKEELIEMSGMVVEVLPDSRFRVTLDNGHNLVAYSAGKMRKHHIRILCGDKVSLELSPY 60

Query: 61 DLNKGRIIFRHLEQRGPSGPRPGFRRR 87
          DL+KGRI FRHLE RGP GP+   RRR
Sbjct: 61 DLSKGRITFRHLEGRGPLGPQ---RRR 84