BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0119.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003691878.1| hypothetical protein DaAHT2_2598 [Desulfuriv... 423 e-116 gb|EGH95616.1| hypothetical protein PLA106_06283 [Pseudomonas sy... 374 e-102 ref|YP_001569317.1| hypothetical protein SARI_00228 [Salmonella ... 355 8e-96 ref|ZP_01462359.1| hypothetical protein STIAU_3189 [Stigmatella ... 221 2e-55 ref|YP_004554581.1| DEAD/DEAH box helicase domain-containing pro... 219 4e-55 >ref|YP_003691878.1| hypothetical protein DaAHT2_2598 [Desulfurivibrio alkaliphilus AHT2] gb|ADH87259.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2] Length = 459 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 195/352 (55%), Positives = 257/352 (73%) Query: 2 WEADLRPINSAKLAIDWINGETLNNLEGAAADLSAGVLRELFRNLCWTLQGLASIITAAA 61 W AD NSA++A+DWING L + E + L AG+L +++RNL W LQG+ SII+AA+ Sbjct: 108 WYADPISTNSAQVALDWINGARLIDQEKVHSSLRAGMLLDMYRNLGWALQGIVSIISAAS 167 Query: 62 DHRVPVGSRPLALQGRENQISLIKKLPRVLNRLSYRVSEGLPDEVLWMKSLNHIDTAFSL 121 D R+P RPL+L+GR + ++ ++KLPR + RLS+RVS GLPD++LWM +LN F L Sbjct: 168 DSRIPDPLRPLSLRGRPDLLTSLRKLPRAITRLSFRVSSGLPDDILWMNALNQTGEQFQL 227 Query: 122 SRNEILSLRSASYITPEQIMLGSNDADNVRMAAFSKSKPSPHAKSNWLRDTCRQWKGNRR 181 SR +IL LR+ Y PEQ+MLG+ DAD VR F+ +KP P K+NWLRD R WK R Sbjct: 228 SREDILGLRNNGYTRPEQLMLGTTDADRVRCEVFANAKPKPILKANWLRDRSRTWKAQER 287 Query: 182 QYVMQKHLQRTEKCPQQRLVSEFYKAAGSDFERVFEDVLKALNIAFEKLDDKTKTGAPDY 241 +HL+R + C + LV EFY + G +FE VFE +L L + FE++DD KTGAPDY Sbjct: 288 ARAASRHLERAKGCREVSLVDEFYLSRGDEFEAVFEKILVHLGVVFERIDDSFKTGAPDY 347 Query: 242 LLKLEESPPLIMELKTRQGEKLVDHTKAVEVLAASELHGHKDTFCITLCHPGVDPSVAMA 301 L+KL+ SPPLI ELK+R+G+ LV++ A EVLAA+E+HGH++TFCITLCHPGVDPSV MA Sbjct: 348 LIKLKNSPPLIFELKSRKGDNLVNYNGATEVLAAAEIHGHRNTFCITLCHPGVDPSVPMA 407 Query: 302 VIPCGRLSVVESVDLGEALIRLCEGTLTQAQLWQWLSTPGQALAGDLPFKEY 353 + GRLSVVE+ DLGE L+RLC+G L+Q QLWQWL+TPGQA+ DLP+ E+ Sbjct: 408 ITGSGRLSVVETNDLGEGLLRLCQGRLSQEQLWQWLATPGQAIGFDLPYTEH 459 >gb|EGH95616.1| hypothetical protein PLA106_06283 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 644 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 177/353 (50%), Positives = 239/353 (67%) Query: 1 MWEADLRPINSAKLAIDWINGETLNNLEGAAADLSAGVLRELFRNLCWTLQGLASIITAA 60 +W A+L+P+N+A + W G L +LEG A DL AG +R + R+L W LQGLASI+TA Sbjct: 291 VWRANLKPVNAAHICSMWAKGAQLKDLEGLAPDLRAGAIRSVIRDLSWVLQGLASILTAV 350 Query: 61 ADHRVPVGSRPLALQGRENQISLIKKLPRVLNRLSYRVSEGLPDEVLWMKSLNHIDTAFS 120 D R P P ++G + + +LPRV+ R+ RV+ GLPD+VLW+ LN + Sbjct: 351 VDRRTPTELLPSVIKGTMPDLRKLARLPRVIRRVIMRVTFGLPDDVLWLMELNADSEKYK 410 Query: 121 LSRNEILSLRSASYITPEQIMLGSNDADNVRMAAFSKSKPSPHAKSNWLRDTCRQWKGNR 180 L R EIL+ +A Y +P+++MLGS +AD+ R F ++KP+P K+NWLRD+ R WK Sbjct: 411 LQREEILAFSAAGYSSPQKLMLGSQEADDCRKEVFIRAKPAPVVKANWLRDSVRDWKTES 470 Query: 181 RQYVMQKHLQRTEKCPQQRLVSEFYKAAGSDFERVFEDVLKALNIAFEKLDDKTKTGAPD 240 R+ + H++R ++Y++ G FE FE +L LNI + KLD TGAPD Sbjct: 471 RKKSSKYHIKRAMNLDSVVYFKDYYESLGVFFELAFERLLAHLNIIYTKLDSNKTTGAPD 530 Query: 241 YLLKLEESPPLIMELKTRQGEKLVDHTKAVEVLAASELHGHKDTFCITLCHPGVDPSVAM 300 YL+ L+ SP LI ELK++QG+KLVD+ A EVL+ASE+HG+KDT C+TLCHPGVDPSV + Sbjct: 531 YLISLDGSPDLIFELKSKQGDKLVDYNDATEVLSASEIHGYKDTACVTLCHPGVDPSVPL 590 Query: 301 AVIPCGRLSVVESVDLGEALIRLCEGTLTQAQLWQWLSTPGQALAGDLPFKEY 353 A+ C RLSVVES DL EAL+RL +G LTQ QLWQWL+TPGQA++ DLPF EY Sbjct: 591 AINSCTRLSVVESHDLAEALLRLRQGYLTQIQLWQWLTTPGQAVSDDLPFVEY 643 >ref|YP_001569317.1| hypothetical protein SARI_00228 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gb|ABX20175.1| hypothetical protein SARI_00228 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 968 Score = 355 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 236/355 (66%), Gaps = 4/355 (1%) Query: 1 MWEADLRPINSAKLAIDWINGETLNNLEGAAADLSAGVLRELFRNLCWTLQGLASIITAA 60 +W+A+L IN+AKLA +WI GE L LE L+AG+L +L+RNL W L+G+++I+ A Sbjct: 613 IWQANLPSINAAKLAFEWIEGEQLRKLEDTFEALTAGMLNDLYRNLAWLLKGVSTIVMAC 672 Query: 61 ADHRVPVGSRPLALQGRENQISLIKKLPRVLNRLSYRVSEGLPDEVLWMKSLNHI--DTA 118 AD R+ RP L + ++ ++ LPR +NRL++RV+ GL D+ LW+ +LN I + Sbjct: 673 ADTRIASDLRPSFLN--DEVVNDLRLLPRFINRLAFRVNTGLTDKALWLTTLNKIYPERG 730 Query: 119 FSLSRNEILSLRSASYITPEQIMLGSNDADNVRMAAFSKSKPSPHAKSNWLRDTCRQWKG 178 F L+R E+L++ S+ Y PE + G +A+ R+ F KP+PH KSNWLRD + WK Sbjct: 731 FKLTRIEMLNISSSEYYKPEYLSQGEQEAEEFRLELFKNIKPTPHKKSNWLRDAAKVWKI 790 Query: 179 NRRQYVMQKHLQRTEKCPQQRLVSEFYKAAGSDFERVFEDVLKALNIAFEKLDDKTKTGA 238 N+R ++H+ +++K ++ +Y A G ++E+ FE +L I + KLDD +TGA Sbjct: 791 NQRSLAAERHVLKSKKIGFEKQFKTYYDARGIEYEQAFEVLLSLAEINYIKLDDGKRTGA 850 Query: 239 PDYLLKLEESPPLIMELKTRQGEKLVDHTKAVEVLAASELHGHKDTFCITLCHPGVDPSV 298 PDYLL SP +++ELKT+ GE LVD A +VL ASEL+G+ D FC+TLCHPGVDPSV Sbjct: 851 PDYLLSFTNSPDIVVELKTKLGENLVDFNGATDVLRASELYGYGDNFCVTLCHPGVDPSV 910 Query: 299 AMAVIPCGRLSVVESVDLGEALIRLCEGTLTQAQLWQWLSTPGQALAGDLPFKEY 353 + CGRLS+VE DLGEAL+RL G LTQ QLWQWLS PG A A DLP KEY Sbjct: 911 LPIIEKCGRLSIVEGHDLGEALLRLLSGNLTQEQLWQWLSIPGAASAEDLPMKEY 965 >ref|ZP_01462359.1| hypothetical protein STIAU_3189 [Stigmatella aurantiaca DW4/3-1] ref|YP_003957796.1| hypothetical protein STAUR_8214 [Stigmatella aurantiaca DW4/3-1] gb|EAU66894.1| hypothetical protein STIAU_3189 [Stigmatella aurantiaca DW4/3-1] gb|ADO75969.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 459 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 124/342 (36%), Positives = 192/342 (56%), Gaps = 3/342 (0%) Query: 2 WEADLRPINSAKLAIDWINGETLNNLEGAAADLSAGVLRELFRNLCWTLQGLASIITAAA 61 WEA R N+A L ++W+ G ++ LE DL AG ++ L R+L W L GLA+I+ +A Sbjct: 102 WEAHRRAANAATLLMNWLEGVDISALEDTYPDLRAGPIQALCRDLAWCLAGLANILASAT 161 Query: 62 DHRVPVGSRPLALQGRENQ-ISLIKKLPRVLNRLSYRVSEGLPDEVLWMKSLNHIDTAFS 120 + RP ++ Q + + +LP + L R+ GLP LW+ L + Sbjct: 162 RPNLSANERPACMRQMPPQALQALHRLPAFIRLLIRRLLAGLPTPALWLLELEPAPGGRA 221 Query: 121 LSRNEILSLRSASYITPEQIMLGSNDADNVRMAAFSKSKPSPHAKSNWLRDTCRQWKGNR 180 +SRNE +SL + + E + +N + +R+ A + + + A+++ ++ W G R Sbjct: 222 VSRNEAISLHQINLSSMENLRRRANWEELIRILAATGASDA-KARAHEIQTMAHAWHGKR 280 Query: 181 RQYVMQKHLQRTEKCPQQRLVSEFYKAAGSDFERVFEDVLKALNIAFEKLDDKTKTGAPD 240 R+ +++ LQR E+ Q L+ EFY + FE FE ++K + I D K GA D Sbjct: 281 RERALKRQLQRLEEA-DQPLLKEFYDSREKKFEAAFEALMKRVGIPCTLFDSGQKPGAFD 339 Query: 241 YLLKLEESPPLIMELKTRQGEKLVDHTKAVEVLAASELHGHKDTFCITLCHPGVDPSVAM 300 YLL++E PP+I+E KT+QG+ LVD A VL++SE +GH+ TFC+TLC PGVDP+V Sbjct: 340 YLLRIEGRPPVIVECKTKQGDHLVDLNAARTVLSSSEQYGHQGTFCVTLCQPGVDPNVLE 399 Query: 301 AVIPCGRLSVVESVDLGEALIRLCEGTLTQAQLWQWLSTPGQ 342 ++ C RLS+ E+ D EA+ RL +LT WL+ PGQ Sbjct: 400 SLQACTRLSIAETHDFAEAMTRLMTNSLTAQSFHDWLTQPGQ 441 >ref|YP_004554581.1| DEAD/DEAH box helicase domain-containing protein [Sphingobium chlorophenolicum L-1] gb|AEG50075.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 959 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 122/349 (34%), Positives = 193/349 (55%), Gaps = 4/349 (1%) Query: 2 WEADLRPINSAKLAIDWINGETLNNLEGAAADLSAGVLRELFRNLCWTLQGLASIITAAA 61 W ++ N A L DW +G+ +E + G ++ + R++ W L G+A I++ Sbjct: 611 WMGNVGAANGAMLLADWFSGQPRQQIEDRVGSVRLGTVQTIGRDVAWILTGIAEIVSTIT 670 Query: 62 DHRVPVGSRPLALQGRENQISLIKKLPRVLNRLSYRVSEGLPDEVLWMKSLNHIDTAFSL 121 + S+P ++ +++L RV+ R + R+S GLP ++LW SL+ D L Sbjct: 671 SPSLAEESKPEPIRDPIAS-QAVRRLARVIRRQAARISAGLPGDILWATSLDLQDRPRRL 729 Query: 122 SRNEILSLRSASYITPEQIMLGSNDADNVRMAAFSKSKPSPHAKSNWLRDTCRQWKGNRR 181 SR ++L+LR+ + +M G+ AD R A + +P +N +RD R+WK + R Sbjct: 730 SRPQLLALRAKGLVRSIDLMDGAAPADTARREALD-AVTNPRL-ANLVRDAARRWKLDER 787 Query: 182 QYVMQKHLQRTEKCPQQRLVSEFYKAAGSDFERVFEDVLKALNIAFEKLDDKTKTGAPDY 241 +Y + HL+R ++ Y G FE F +L L I +++LD K G PD+ Sbjct: 788 EYCKRVHLKRAAPIGGAEIIEALYDTRGDAFEAAFASLLDFLAIPYQRLDGPGKVGYPDF 847 Query: 242 LLKLEESPPLIMELKTRQGEK-LVDHTKAVEVLAASELHGHKDTFCITLCHPGVDPSVAM 300 L+ +E P +++ELKT+ + +V A EVL+ASEL G +D C+TLC+PGV+PSV Sbjct: 848 LVSIESFPGIVVELKTKVADNDVVPFNAATEVLSASELIGLRDHPCVTLCNPGVEPSVPR 907 Query: 301 AVIPCGRLSVVESVDLGEALIRLCEGTLTQAQLWQWLSTPGQALAGDLP 349 + CGRL V+E+ DL EA +RL EG L++ + WL+TPG AL DLP Sbjct: 908 LIESCGRLCVLEACDLAEAALRLREGVLSRDAFYNWLTTPGIALREDLP 956