BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0118.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001569317.1| hypothetical protein SARI_00228 [Salmonella ... 443 e-122 ref|ZP_01462331.1| putative Ski2-type helicase [Stigmatella aura... 352 9e-95 ref|YP_004554581.1| DEAD/DEAH box helicase domain-containing pro... 315 1e-83 ref|ZP_05091010.1| ATP-dependent DNA helicase 1, putative [Rueg... 310 5e-82 gb|EGH95618.1| hypothetical protein PLA106_06288 [Pseudomonas sy... 300 5e-79 >ref|YP_001569317.1| hypothetical protein SARI_00228 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gb|ABX20175.1| hypothetical protein SARI_00228 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 968 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 220/456 (48%), Positives = 299/456 (65%), Gaps = 3/456 (0%) Query: 1 MRYELPEGHGLSATTVEHLVFKEGENIALSDAQYAALSAGVGRGESALVASPTSTGKTHI 60 M+Y LP G+ L +KE + L+D QY +L GVG+G+S LV SPTSTGKT + Sbjct: 1 MKYGLPVNCGIDEDVSSPLFYKENDEFCLTDVQYESLDRGVGKGKSVLVVSPTSTGKTLV 60 Query: 61 ALWAIARSLEESCNTVYLVTHRALAKQKFDDFKSQILGPYLGNHSASLVVATGDYVEDAE 120 A+ + ++E N V+LVTHRALA+QKF+DFK Q+L +L N ++LV+ATGD +EDA Sbjct: 61 GTVALTQGIQEGKNAVFLVTHRALARQKFEDFKKQLLKDFLDNDPSALVLATGDIIEDAF 120 Query: 121 GEIVRNPLAAPLLVATYEKYLALLSASGIPTTMRSTVVICDEIQLLGDAHRGQSVEVLLT 180 G V +PL A L+VATYEKYL +LSASG+P +M+STV +CDEIQL+GD +RGQ VE+LLT Sbjct: 121 GNTVPSPLNAKLMVATYEKYLGILSASGVPKSMKSTVFVCDEIQLIGDENRGQQVEILLT 180 Query: 181 LLRNAGCKQLVGLSAVLHEKDAVDLANWLGVTLVVNHAREKHLRYECWTANG-IASTSSA 239 L++ AG QLVGLSAVL +DA+ L+ WL + L+ REKHL Y+C NG + S S+ Sbjct: 181 LIKRAGWAQLVGLSAVLEHRDALKLSQWLEIELIYTSTREKHLTYQCHAHNGEVYSCSTK 240 Query: 240 NPELIEEGLAVPAGISLNPLEILLSLLREPSPPLPIIVFCMSKKEVFELAEQFLELTKKA 299 +PE I + S+ + + L + PIIVFCM+KKE + LA+ + K Sbjct: 241 SPEEITSIKSKQPTSSI--ARTIKNYLEKNKELTPIIVFCMTKKETYTLAQSLVSEYKSP 298 Query: 300 ATGQLSLIFDDFPQTSANTFLSKSLSNRIAVHTADLTDEERHVVEQHLLEGKLDVVFATT 359 Q+ FD P+T AN L + + R+A H+ADL DEER ++E+ +L+ ++DVVFAT+ Sbjct: 299 FNTQMDFDFDGVPETLANNMLKEFVQYRVACHSADLIDEEREIIERKILDKEIDVVFATS 358 Query: 360 TLAAGVNFPLGAAIFANWARWDGPTRTRIPINAGEFHNMAGRVGRMGFAHEHGRVIFIAE 419 TLAAGVNFPLG A FA+W RW+ R IPI + EFHNMAGRVGRMG H G +I+ + Sbjct: 359 TLAAGVNFPLGTAFFASWQRWNSDLRKNIPIGSSEFHNMAGRVGRMGSDHSEGNIIYFSN 418 Query: 420 TTPKVVAARSYLKLGQLSALEPRVSPERFDLSGLQL 455 + +A YLK + L+ R+ P+ F+ LQL Sbjct: 419 NNADLTSALKYLKFSDMPPLKSRIEPKGFNRLILQL 454 >ref|ZP_01462331.1| putative Ski2-type helicase [Stigmatella aurantiaca DW4/3-1] ref|YP_003957795.1| hypothetical protein STAUR_8213 [Stigmatella aurantiaca DW4/3-1] gb|EAU66866.1| putative Ski2-type helicase [Stigmatella aurantiaca DW4/3-1] gb|ADO75968.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 514 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 205/461 (44%), Positives = 276/461 (59%), Gaps = 7/461 (1%) Query: 1 MRYELPEGHGLSATTVEH---LVFKEGENIALSDAQYAALSAGVGRGESALVASPTSTGK 57 M++ LP HGLS + L + + +L+D Q+AAL+AGV RG S LV +PTSTGK Sbjct: 1 MQFNLPSNHGLSQDVQKDPDLLWRAQDGSPSLTDVQHAALAAGVARGTSLLVVAPTSTGK 60 Query: 58 THIALWAIARSL--EESCNTVYLVTHRALAKQKFDDFKSQILGPYLGNHSASLVVATGDY 115 THI LWA+ L ++ + VYLVTHRALA+QKF++ + + S+ +ATGD Sbjct: 61 THIGLWALMGWLFSDQPRHAVYLVTHRALARQKFEELTKLLCARHFQGDKGSIALATGDT 120 Query: 116 VEDAEGEIVRNPLAAPLLVATYEKYLALLSASGIPTTMRSTVVICDEIQLLGDAHRGQSV 175 VEDAEG PL P+LVATYEKYLAL+S +GI M +++ICDEIQ+LGD RG+++ Sbjct: 121 VEDAEGHTPTQPLEVPVLVATYEKYLALVSGAGIREDMSQSLIICDEIQILGDESRGRNI 180 Query: 176 EVLLTLLRNAGCKQLVGLSAVLHEKDAVDLANWLGVTLVVNHAREKHLRYECWTANGIAS 235 E+LLTL++ A QLVGLSAVL DA L++WLGV L+ +REKHL YEC T + S Sbjct: 181 EILLTLMKKARWGQLVGLSAVLDPSDAKHLSDWLGVKLIHLSSREKHLHYECRTPTRLLS 240 Query: 236 TSSANPELIEEGLAVPAGISLNPLEILLSLLREPSPPLPIIVFCMSKKEVFELAEQFLEL 295 + P+ + PA + I+ +LR+P LP IVFC SKK V+E + Sbjct: 241 FRTDAPDAGIQDQERPASAPDDLPAIIAQVLRQPH-HLPAIVFCTSKKRVYETTGAYARS 299 Query: 296 TKKAATGQLSLIFDDFPQTSANTFLSKSLSNRIAVHTADLTDEERHVVEQHLLEGKLDVV 355 + + SL+ T+A LS + A HTADL D ER +VE+ + + +V Sbjct: 300 RRLTVSPTQSLLPGLRDSTAAARELSCYIPEGFAFHTADLLDAERRLVEEKIASKDIQLV 359 Query: 356 FATTTLAAGVNFPLGAAIFANWARWDGPTRTRIPINAGEFHNMAGRVGRMGFAHEHGRVI 415 FAT+TLAAGVNFP AIF W RW+ T+T P+ EF NMAGRVGRMG HG V+ Sbjct: 360 FATSTLAAGVNFPFKTAIFDRWKRWNDRTKTHEPLPPSEFQNMAGRVGRMGTTGTHGSVL 419 Query: 416 FIA-ETTPKVVAARSYLKLGQLSALEPRVSPERFDLSGLQL 455 + + + R YL+ Q + L PR++P+ F LQL Sbjct: 420 LTSTDGFADKKSIRIYLQPDQTNPLTPRITPQAFHQLSLQL 460 >ref|YP_004554581.1| DEAD/DEAH box helicase domain-containing protein [Sphingobium chlorophenolicum L-1] gb|AEG50075.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum L-1] Length = 959 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 197/460 (42%), Positives = 267/460 (58%), Gaps = 15/460 (3%) Query: 1 MRYELPEGHGLSATTVEH--LVFKEGENIALSDAQYAALSAGVGRGESALVASPTSTGKT 58 M+ LP HGLSA + + L+ ++ +++DAQY AL+AGV RGE+ LV++PTSTGKT Sbjct: 1 MKSALPLDHGLSAHLLNNALLMPRQAGEPSITDAQYDALAAGVARGENMLVSAPTSTGKT 60 Query: 59 HIALWAIARSLEESCNTVYLVTHRALAKQKFDDFKSQILGPYLGNHSASLVVATGDYVED 118 I W + +L VYLV++RALA QKF++ + L L +S+V ATGD VED Sbjct: 61 LIGWWGVNAALAAGHRVVYLVSYRALAHQKFEEAQRLFLEAVLQGDRSSIVCATGDSVED 120 Query: 119 AEGEIVRNPLAAPLLVATYEKYLALLSASGIPTTMRSTVVICDEIQLLGDAHRGQSVEVL 178 A G PL+A +L+ATYEK+L LS G P + +CDEIQL+G+ RGQ+VE+L Sbjct: 121 ASGRKTSAPLSARILIATYEKFLGCLSTGGPPRDLTDICFVCDEIQLIGEKARGQNVELL 180 Query: 179 LTLLRNAGCKQLVGLSAVLHEKDAVDLANWLGVTLVVNHAREKHLRYECWTANGIASTSS 238 LTLL+ + Q +GLSAVL E DAV LA+WL + LV N REK L EC + +S Sbjct: 181 LTLLKRSRWGQFIGLSAVLSESDAVALADWLELKLVRNPTREKTLTIECRAPDKTVCVTS 240 Query: 239 A---NPELIEEGLAVPAGISLNPLEILLSLLREPSPPLPIIVFCMSKKEVFELAEQFLEL 295 A +P E + P L+PL I+ + + P+I FCM E LA Q Sbjct: 241 APARDPNWSE--IPAPRQQQLSPLGIITEMAANAARR-PVIAFCMKVDETLSLAGQI--A 295 Query: 296 TKKAATGQLSLIFDDFPQTSANTFLSKSLSNRIAVHTADLTDEERHVVEQHLLEGKLDVV 355 + AT + + + FL K +A H A+L++EER VE L G++D+V Sbjct: 296 AARPATRHVEVPAGLDLDETLLGFLRKG----VAFHNAELSEEERLFVETRLANGEVDIV 351 Query: 356 FATTTLAAGVNFPLGAAIFANWARWDGPTRTRIPINAGEFHNMAGRVGRMGFAHEHGRVI 415 FATTTLAAGVNFPLG+A+F+ W RW+ R PI+ EF NMAGRVGRMG A + GRV+ Sbjct: 352 FATTTLAAGVNFPLGSAVFSAWQRWNRDRRRYEPISRAEFQNMAGRVGRMGQAGD-GRVV 410 Query: 416 FIAETTPKVVAARSYLKLGQLSALEPRVSPERFDLSGLQL 455 A ++ AA + L L ++PE F LQ+ Sbjct: 411 LSANGVGELHAATRLMDLAGQDELGSGITPEDFGPLVLQI 450 >ref|ZP_05091010.1| ATP-dependent DNA helicase 1, putative [Ruegeria sp. R11] gb|EEB72702.1| ATP-dependent DNA helicase 1, putative [Ruegeria sp. R11] Length = 956 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 183/439 (41%), Positives = 256/439 (58%), Gaps = 11/439 (2%) Query: 18 HLVFKEGENIALSDAQYAALSAGVGRGESALVASPTSTGKTHIALWAIARSLEESCNTVY 77 +L+ + G N++L+DAQYAAL AG+ G+S L+++PTSTGKT I WA A LE VY Sbjct: 14 NLMPRNGGNVSLTDAQYAALEAGLACGKSLLISAPTSTGKTLIGWWAAASGLERGKRFVY 73 Query: 78 LVTHRALAKQKFDDFKSQILGPYLGNHSASLVVATGDYVEDAEGEIVRNPLAAPLLVATY 137 LV+HRALA QKF++ ++ G +LG+ +++LV ATGD V D G PL+A +LVATY Sbjct: 74 LVSHRALASQKFEEIQALFQGSWLGDDASTLVCATGDGVVDGSGRANSAPLSATILVATY 133 Query: 138 EKYLALLSASGIPTTMRSTVVICDEIQLLGDAHRGQSVEVLLTLLRNAGCKQLVGLSAVL 197 EKYLAL+SA G P + V +CDEIQL+GD RG+ VE+LL++L+ Q +GLSAV+ Sbjct: 134 EKYLALVSAGGPPQDLSDVVFVCDEIQLIGDGSRGKHVELLLSVLKRTRWYQFIGLSAVM 193 Query: 198 HEKDAVDLANWLGVTLVVNHAREKHLRYEC-WTANGIASTSSANPELIEEGLAVPAGISL 256 + A LA+WLG++LV REK L E W + +TS+ PE IE P L Sbjct: 194 DDVGASQLAHWLGLSLVKVETREKSLTIEGRWNNGCLIATST--PEGIEPLRQEPKAKEL 251 Query: 257 NPLEILLSLLREPSPPLPIIVFCMSKKEVFELAEQFLELTKKAATGQLSLIFDDFPQTSA 316 ++ L+ P+IVFCM + + LA ++ A D Sbjct: 252 RLNAMVDELVGADKK--PVIVFCMKVDDTYNLAAKWAATQTAAQAVVPPAGLD------L 303 Query: 317 NTFLSKSLSNRIAVHTADLTDEERHVVEQHLLEGKLDVVFATTTLAAGVNFPLGAAIFAN 376 + L + ++ R A H A+L++ ER VE + E +DVVFAT+TLAAGVNFPLG+A+F+ Sbjct: 304 DASLLELINKRCAFHNAELSEAERAYVEDLMQEKTIDVVFATSTLAAGVNFPLGSAVFSK 363 Query: 377 WARWDGPTRTRIPINAGEFHNMAGRVGRMGFAHEHGRVIFIAETTPKVVAARSYLKLGQL 436 W RWD + +PI EF NMAGRVGRMG + G V+ AE + + ++ Sbjct: 364 WKRWDFEKKMHLPIRRDEFQNMAGRVGRMGQEADEGTVLATAEGAGDLGNLERLMDFSKM 423 Query: 437 SALEPRVSPERFDLSGLQL 455 L ++P F +QL Sbjct: 424 ETLGVGITPSDFSSLVIQL 442 >gb|EGH95618.1| hypothetical protein PLA106_06288 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 301 Score = 300 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 150/286 (52%), Positives = 204/286 (71%), Gaps = 2/286 (0%) Query: 1 MRYELPEGHGLSATTVEHLVFKEGENIALSDAQYAALSAGVGRGESALVASPTSTGKTHI 60 M+YE P+ H L+ T + L +GE ++ +DAQ+ AL GVGRG+S LV SPTST KT I Sbjct: 17 MKYEFPDNHCLTPTVITKLSLFDGE-VSFTDAQFGALDCGVGRGDSLLVVSPTSTDKTLI 75 Query: 61 ALWAIARSLEESCNTVYLVTHRALAKQKFDDFKSQILGPYLGNHSASLVVATGDYVEDAE 120 LW IA++LE N VYLVTHRALA+QK DF+ Q+L +L +SLV+ATGD V+DA Sbjct: 76 GLWGIAQNLERGANAVYLVTHRALAQQKMSDFQDQLLNDFLSGDYSSLVLATGDSVKDAA 135 Query: 121 GEIVRNPLAAPLLVATYEKYLALLSASGIPTTMRSTVVICDEIQLLGDAHRGQSVEVLLT 180 GE +PL A +LVATYEKYLALLSASGIP+ MR+TVV+CDEIQ++ D RGQSVEVLL+ Sbjct: 136 GENCADPLGARVLVATYEKYLALLSASGIPSDMRNTVVVCDEIQIIADESRGQSVEVLLS 195 Query: 181 LLRNAGCKQLVGLSAVLHEKDAVDLANWLGVTLVVNHAREKHLRYECWTANGIASTSSAN 240 LLR G Q +GLSAVL KDA +L++WLGV L+++ AREKH+ Y C T +G+ + ++ Sbjct: 196 LLRRVGWLQFIGLSAVLDTKDARELSDWLGVNLLLSPAREKHIEYSCHTPSGLITANTGQ 255 Query: 241 PELIEEGLAVPAGISLNPLEILLSLLREPSPPLPIIVFCMSKKEVF 286 P+L+ + I L+ + ++ +++ S LP+IVFCM+ K+ + Sbjct: 256 PDLLVGPIPQSPNI-LDAIALVKHVVKHESGSLPLIVFCMTVKDTY 300