BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0116.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773798.1| 50S ribosomal protein L27 [Herbaspirillum se...   127   6e-28
ref|YP_001101023.1| 50S ribosomal protein L27 [Herminiimonas ars...   120   6e-26
ref|YP_001354683.1| 50S ribosomal protein L27 [Janthinobacterium...   115   2e-24
ref|ZP_08274079.1| LSU ribosomal protein L27p [Oxalobacteraceae ...   115   2e-24
ref|YP_004754544.1| 50S ribosomal protein L27p [Collimonas fungi...   113   8e-24

>ref|YP_003773798.1| 50S ribosomal protein L27 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61890.1| 50S ribosomal subunit protein L27 [Herbaspirillum seropedicae
          SmR1]
          Length = 85

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 83/85 (97%), Positives = 84/85 (98%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGII+RQRGTRVHAGENVGVGKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIVRQRGTRVHAGENVGVGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVTA 85
          ALKDGKVKFVVKGLQQRQYATVV A
Sbjct: 61 ALKDGKVKFVVKGLQQRQYATVVPA 85


>ref|YP_001101023.1| 50S ribosomal protein L27 [Herminiimonas arsenicoxydans]
 sp|A4G8R5|RL27_HERAR RecName: Full=50S ribosomal protein L27
 emb|CAL62902.1| 50S ribosomal subunit protein L27 [Herminiimonas arsenicoxydans]
          Length = 85

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/85 (88%), Positives = 78/85 (91%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGT+VH GENVG+GKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTKVHPGENVGMGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVTA 85
          AL DGKV FV+KG  QRQY TVV A
Sbjct: 61 ALTDGKVAFVIKGALQRQYVTVVPA 85


>ref|YP_001354683.1| 50S ribosomal protein L27 [Janthinobacterium sp. Marseille]
 sp|A6T2D6|RL27_JANMA RecName: Full=50S ribosomal protein L27
 gb|ABR91654.1| 50S ribosomal protein L27 [Janthinobacterium sp. Marseille]
          Length = 85

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/85 (83%), Positives = 75/85 (88%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQ INAGGII+RQRGT++H GENVG+GKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIVRQRGTKMHPGENVGIGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVTA 85
          AL DGKV FV KG  QR Y TVV A
Sbjct: 61 ALTDGKVAFVTKGALQRHYVTVVPA 85


>ref|ZP_08274079.1| LSU ribosomal protein L27p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32448.1| LSU ribosomal protein L27p [Oxalobacteraceae bacterium IMCC9480]
          Length = 85

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/85 (83%), Positives = 76/85 (89%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQ INAGGIIIRQRGT+ H GENVG+GKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKTHPGENVGMGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVTA 85
          AL  GKV+F+VKG  QRQ+ TVV A
Sbjct: 61 ALIPGKVQFLVKGATQRQFVTVVPA 85


>ref|YP_004754544.1| 50S ribosomal protein L27p [Collimonas fungivorans Ter331]
 gb|AEK63721.1| LSU ribosomal protein L27p [Collimonas fungivorans Ter331]
          Length = 85

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 72/85 (84%), Positives = 75/85 (88%)

Query: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQVINAGGIIIRQRGTRVHAGENVGVGKDHTLF 60
          MAHKKGGGTTRNGRDSESKRLGVKVYGGQ INAGGIIIRQRGT+ H GENVG+GKDHTLF
Sbjct: 1  MAHKKGGGTTRNGRDSESKRLGVKVYGGQAINAGGIIIRQRGTKTHPGENVGMGKDHTLF 60

Query: 61 ALKDGKVKFVVKGLQQRQYATVVTA 85
          AL DGKV+FV KG  QR Y TVV A
Sbjct: 61 ALIDGKVQFVTKGATQRNYVTVVAA 85