BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0108.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773805.1| hypothetical protein Hsero_0372 [Herbaspiril...   124   7e-27
ref|YP_004754534.1| hypothetical protein CFU_3888 [Collimonas fu...   110   8e-23
ref|YP_002762582.1| hypothetical protein GAU_3070 [Gemmatimonas ...   101   4e-20
ref|YP_001101016.1| hypothetical protein HEAR2779 [Herminiimonas...   100   6e-20
ref|ZP_04579533.1| SWIB/MDM2 domain-containing protein [Oxalobac...    99   2e-19

>ref|YP_003773805.1| hypothetical protein Hsero_0372 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61897.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 175

 Score =  124 bits (310), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/83 (98%), Positives = 83/83 (100%)

Query: 69  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLK 128
           RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKK+KLQNAENKRNIDADDKLK
Sbjct: 93  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKNKLQNAENKRNIDADDKLK 152

Query: 129 AIFGGKKQVTMFEMTKLISAHLS 151
           AIFGGKKQVTMFEMTKLISAHLS
Sbjct: 153 AIFGGKKQVTMFEMTKLISAHLS 175


>ref|YP_004754534.1| hypothetical protein CFU_3888 [Collimonas fungivorans Ter331]
 gb|AEK63711.1| hypothetical protein CFU_3888 [Collimonas fungivorans Ter331]
          Length = 216

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 70/86 (81%), Positives = 74/86 (86%)

Query: 65  PAAKRTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDAD 124
           P   R PNAAFMK LTPSA L  VVGA PLPRTEVTKKVWEYIKKHKLQN ENKRNI AD
Sbjct: 130 PKVARKPNAAFMKALTPSAVLAAVVGATPLPRTEVTKKVWEYIKKHKLQNPENKRNIIAD 189

Query: 125 DKLKAIFGGKKQVTMFEMTKLISAHL 150
           +KLKA+FGGKK+V+MFEMTKLIS HL
Sbjct: 190 EKLKAVFGGKKEVSMFEMTKLISDHL 215


>ref|YP_002762582.1| hypothetical protein GAU_3070 [Gemmatimonas aurantiaca T-27]
 dbj|BAH40112.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 140

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query: 69  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLK 128
           RTPNAAFMK LTPS+ L  +VG KPLPRTEV KK+W YIKK+ LQ+  NKRNI+ADDKLK
Sbjct: 58  RTPNAAFMKALTPSSDLAAIVGDKPLPRTEVVKKLWAYIKKNNLQDKTNKRNINADDKLK 117

Query: 129 AIFGGKKQVTMFEMTKLISAHL 150
            +FGGKK V+MF+MTKL+SAHL
Sbjct: 118 VVFGGKKTVSMFDMTKLVSAHL 139


>ref|YP_001101016.1| hypothetical protein HEAR2779 [Herminiimonas arsenicoxydans]
 emb|CAL62895.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 150

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 67/82 (81%), Positives = 71/82 (86%)

Query: 69  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLK 128
           R PNAAFMKP+TPS  L  V+GA P PRTEVTKKVWEYIKK KLQN ENKR IDADDKLK
Sbjct: 68  RKPNAAFMKPVTPSTVLAAVIGAAPAPRTEVTKKVWEYIKKFKLQNPENKRMIDADDKLK 127

Query: 129 AIFGGKKQVTMFEMTKLISAHL 150
           A+FGGKKQV+MFEMTKLIS HL
Sbjct: 128 AVFGGKKQVSMFEMTKLISGHL 149


>ref|ZP_04579533.1| SWIB/MDM2 domain-containing protein [Oxalobacter formigenes OXCC13]
 gb|EEO30506.1| SWIB/MDM2 domain-containing protein [Oxalobacter formigenes OXCC13]
          Length = 128

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/82 (74%), Positives = 73/82 (89%)

Query: 69  RTPNAAFMKPLTPSAALGEVVGAKPLPRTEVTKKVWEYIKKHKLQNAENKRNIDADDKLK 128
           RTPNAAFMKP+TP+A L  +VGA PLPRTEVTKKVW+YIKK+ LQ+ +N+R I+ADDKLK
Sbjct: 46  RTPNAAFMKPVTPTAMLAAIVGAAPLPRTEVTKKVWDYIKKYNLQDKDNRRMINADDKLK 105

Query: 129 AIFGGKKQVTMFEMTKLISAHL 150
            +FGGKKQV+MFEMTKL+SA L
Sbjct: 106 PVFGGKKQVSMFEMTKLVSAQL 127