BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0107.p (456 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773806.1| signal recognition particle subunit SRP54 pr... 760 0.0 ref|YP_004754533.1| signal recognition particle subunit Ffh sRP5... 691 0.0 ref|YP_001354675.1| signal recognition particle, subunit SRP54 [... 682 0.0 emb|CAL62893.2| Signal recognition particle protein (Fifty-four ... 674 0.0 ref|YP_004028016.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP... 661 0.0 >ref|YP_003773806.1| signal recognition particle subunit SRP54 protein [Herbaspirillum seropedicae SmR1] gb|ADJ61898.1| signal recognition particle subunit SRP54 protein [Herbaspirillum seropedicae SmR1] Length = 456 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 444/456 (97%), Positives = 449/456 (98%) Query: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKA+ Sbjct: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAL 60 Query: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120 GEEVIGSLTPGQALVGVVQRELASLMGADLG EASQLNFATQPPAIILMAGLQGAGKTTT Sbjct: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120 Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180 VGKLAKYLRE KKKVLTVSADVYRPAAIGQL+TVTGQAGADFFPSQ TDKPVDIALAAL Sbjct: 121 VGKLAKYLRETTKKKVLTVSADVYRPAAIGQLETVTGQAGADFFPSQATDKPVDIALAAL 180 Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF Sbjct: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 +DALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG Sbjct: 241 SDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 MGDILALVEEARKGVDM AA+ LA+KIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA Sbjct: 301 MGDILALVEEARKGVDMAAAEGLANKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR Sbjct: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRGMKGMLPGGMR 456 MLSQFEQMQSMMKKLKGGGMMKMMR MKGMLPGGMR Sbjct: 421 MLSQFEQMQSMMKKLKGGGMMKMMRNMKGMLPGGMR 456 >ref|YP_004754533.1| signal recognition particle subunit Ffh sRP54 [Collimonas fungivorans Ter331] gb|AEK63710.1| Signal recognition particle, subunit Ffh SRP54 [Collimonas fungivorans Ter331] Length = 465 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 387/430 (90%), Positives = 412/430 (95%) Query: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60 MLDNLTQRLAKVVKTMRGEARLTE+NTA+MLREVRLALLEADVALPAVREFIA VK+KA+ Sbjct: 11 MLDNLTQRLAKVVKTMRGEARLTETNTADMLREVRLALLEADVALPAVREFIANVKQKAL 70 Query: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120 GEEVI SLTPGQALVGVVQRELASLMGADLG EASQLNFATQPPAIILMAGLQGAGKTTT Sbjct: 71 GEEVIASLTPGQALVGVVQRELASLMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 130 Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180 VGKLAKYLRE KKKKVLTVSADVYRPAAIGQLQTVT Q GADFFP+ TDKPV+IALAAL Sbjct: 131 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLQTVTAQVGADFFPTATTDKPVEIALAAL 190 Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 DYAK+H+H+VLI+DTAGRLGID+AMM EI A+HAA+KPIETLFVVDAMLGQDAINTAKAF Sbjct: 191 DYAKRHYHDVLIIDTAGRLGIDEAMMKEISAIHAAVKPIETLFVVDAMLGQDAINTAKAF 250 Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 +DALPLTG+VLTKLDGD+RGGAALSVRHITGKPIKFAG AEKLDGLEAFDP+RMANRILG Sbjct: 251 SDALPLTGIVLTKLDGDARGGAALSVRHITGKPIKFAGTAEKLDGLEAFDPTRMANRILG 310 Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 MGDILALVEEA+KGVD+ AA+DLAHKIKGGGKFDLNDFKAQL QMKKMGGL++L+DKLPA Sbjct: 311 MGDILALVEEAQKGVDVAAAKDLAHKIKGGGKFDLNDFKAQLGQMKKMGGLSNLMDKLPA 370 Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 Q Q AAG ANMDQAEKQVRRMEGIINSMT QERAKPELIKA+RKRRIA GAGVQVQEVNR Sbjct: 371 QFQQAAGGANMDQAEKQVRRMEGIINSMTAQERAKPELIKASRKRRIAVGAGVQVQEVNR 430 Query: 421 MLSQFEQMQS 430 MLSQF+QMQS Sbjct: 431 MLSQFDQMQS 440 >ref|YP_001354675.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] gb|ABR88876.1| signal recognition particle, subunit SRP54 [Janthinobacterium sp. Marseille] Length = 455 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 403/453 (88%), Positives = 435/453 (96%) Query: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60 MLDNLTQRLAK VKTMRGEARLTE+NTAEMLREVRLALLEADVALPAVREFI++VKEKAM Sbjct: 1 MLDNLTQRLAKAVKTMRGEARLTETNTAEMLREVRLALLEADVALPAVREFISRVKEKAM 60 Query: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120 GE+V+GSLTPGQALVGVVQRELA++MGADLG EASQLNFATQPPAIILMAGLQGAGKTTT Sbjct: 61 GEDVVGSLTPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120 Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180 VGKLAKYLRE KKKKVLTVSADVYRPAAIGQL+TVT Q GADFFPSQ TDKPVDIALAAL Sbjct: 121 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLETVTAQVGADFFPSQATDKPVDIALAAL 180 Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 DYAK+H+H+VLI+DTAGRLGID+AMM EI+A+HAA+KPIETLFVVDAMLGQDAINTAKAF Sbjct: 181 DYAKRHYHDVLIIDTAGRLGIDEAMMHEIKALHAAVKPIETLFVVDAMLGQDAINTAKAF 240 Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 +DALPLTG+VLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDP+RMA+RILG Sbjct: 241 SDALPLTGIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPARMADRILG 300 Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 MGDILALVEEARKGVDMEAAQ LA KIK GGKFDLNDFK+QL+QMKKMGG+++L+DKLPA Sbjct: 301 MGDILALVEEARKGVDMEAAQGLAQKIKVGGKFDLNDFKSQLAQMKKMGGMSNLMDKLPA 360 Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 Q+Q AA ANM A+KQV RMEGIINSMTPQERAKPELIKA+RKRRIA GAGVQVQEVNR Sbjct: 361 QLQQAASGANMGMADKQVIRMEGIINSMTPQERAKPELIKASRKRRIATGAGVQVQEVNR 420 Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRGMKGMLPG 453 ML+QF+QMQ+MMKKLKGG MMKMMRGMKGMLPG Sbjct: 421 MLAQFDQMQTMMKKLKGGNMMKMMRGMKGMLPG 453 >emb|CAL62893.2| Signal recognition particle protein (Fifty-four homolog) [Herminiimonas arsenicoxydans] Length = 455 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 400/453 (88%), Positives = 431/453 (95%) Query: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60 MLDNLTQRLAK VKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFI +VKEKAM Sbjct: 1 MLDNLTQRLAKAVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIGRVKEKAM 60 Query: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120 GE+VIG+L+PGQALVGVVQRELA++MGADLG EASQLNFATQPPAIILMAGLQGAGKTTT Sbjct: 61 GEDVIGALSPGQALVGVVQRELAAIMGADLGPEASQLNFATQPPAIILMAGLQGAGKTTT 120 Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180 VGKLAKYLRE KKKKVLTVSADVYRPAAIGQL+TVT Q GADFFPS+ TDKPVDIALAAL Sbjct: 121 VGKLAKYLREQKKKKVLTVSADVYRPAAIGQLKTVTEQVGADFFPSEITDKPVDIALAAL 180 Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 DYAK+H+H+VLI+DTAGRLGID+AMM EI A+HAA+KPIETLFVVDAMLGQDAINTAKAF Sbjct: 181 DYAKRHYHDVLIIDTAGRLGIDEAMMQEISAIHAAVKPIETLFVVDAMLGQDAINTAKAF 240 Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 +DALPLTG+VLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDP RMA+RILG Sbjct: 241 SDALPLTGIVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPVRMADRILG 300 Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 MGDILALVEEARKGVDM+AA LA KIK GGKFDLNDFK+QL+QMKKMGG+++L+DKLPA Sbjct: 301 MGDILALVEEARKGVDMDAAAGLAQKIKVGGKFDLNDFKSQLAQMKKMGGMSNLMDKLPA 360 Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 Q+Q AA ANM A+KQV RMEGIINSMTPQERAKP+LIKA+RKRRIA GAGVQVQEVNR Sbjct: 361 QLQQAASGANMGMADKQVVRMEGIINSMTPQERAKPDLIKASRKRRIATGAGVQVQEVNR 420 Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRGMKGMLPG 453 ML+QF+QMQSMMKKLKGG MMKMMRGMKGMLPG Sbjct: 421 MLAQFDQMQSMMKKLKGGNMMKMMRGMKGMLPG 453 >ref|YP_004028016.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia rhizoxinica HKI 454] emb|CBW73872.1| SIGNAL RECOGNITION PARTICLE, SUBUNIT FFH/SRP54 [Burkholderia rhizoxinica HKI 454] Length = 480 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 369/453 (81%), Positives = 409/453 (90%) Query: 1 MLDNLTQRLAKVVKTMRGEARLTESNTAEMLREVRLALLEADVALPAVREFIAKVKEKAM 60 MLDNLTQR+A+VVKT+RGEARLTE+NT EMLREVRLALLEADVALP VREFIAKV+EKA+ Sbjct: 26 MLDNLTQRMARVVKTLRGEARLTEANTQEMLREVRLALLEADVALPVVREFIAKVREKAL 85 Query: 61 GEEVIGSLTPGQALVGVVQRELASLMGADLGAEASQLNFATQPPAIILMAGLQGAGKTTT 120 GEEVI SLTPGQALVGVVQREL +++G D +A++LN A PPA+ILMAGLQGAGKTTT Sbjct: 86 GEEVISSLTPGQALVGVVQRELTAVIGGDYEGKAAELNLAVTPPAVILMAGLQGAGKTTT 145 Query: 121 VGKLAKYLRENKKKKVLTVSADVYRPAAIGQLQTVTGQAGADFFPSQPTDKPVDIALAAL 180 VGKLAK LRE +KKKVLTVS DVYRPAAI QL+TVT Q GADFFPSQP KP+DIA AL Sbjct: 146 VGKLAKLLREMQKKKVLTVSCDVYRPAAIAQLKTVTEQVGADFFPSQPDQKPLDIARDAL 205 Query: 181 DYAKKHHHEVLIVDTAGRLGIDQAMMDEIRAVHAAIKPIETLFVVDAMLGQDAINTAKAF 240 D+AK+H+H+VLIVDTAGRLGID+AMM EI A+HA +KP ETLFVVDAMLGQDA+NTAKAF Sbjct: 206 DWAKRHYHDVLIVDTAGRLGIDEAMMQEIAALHAQLKPAETLFVVDAMLGQDAVNTAKAF 265 Query: 241 NDALPLTGVVLTKLDGDSRGGAALSVRHITGKPIKFAGVAEKLDGLEAFDPSRMANRILG 300 NDALPLTGVVLTKLDGDSRGGAALSVRH+TG+PIKF GV EKLDGLE F P RMANRILG Sbjct: 266 NDALPLTGVVLTKLDGDSRGGAALSVRHVTGRPIKFVGVGEKLDGLETFYPERMANRILG 325 Query: 301 MGDILALVEEARKGVDMEAAQDLAHKIKGGGKFDLNDFKAQLSQMKKMGGLTSLLDKLPA 360 MGDILALVEEA++GVD++AAQ LA K+K GG FDLNDF+AQLSQMKKMGGL+ L+DKLPA Sbjct: 326 MGDILALVEEAQRGVDVQAAQKLAEKVKKGGAFDLNDFRAQLSQMKKMGGLSMLMDKLPA 385 Query: 361 QMQAAAGNANMDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNR 420 Q Q AAGNA+M QAEKQ+ RMEGIINSMTP ERAKPELIKA+RKRRIA GAGVQVQEVNR Sbjct: 386 QFQQAAGNADMSQAEKQMHRMEGIINSMTPAERAKPELIKASRKRRIATGAGVQVQEVNR 445 Query: 421 MLSQFEQMQSMMKKLKGGGMMKMMRGMKGMLPG 453 ML+QFEQM+ MMKKLKGG + KMMRGMKGMLPG Sbjct: 446 MLNQFEQMRGMMKKLKGGNLQKMMRGMKGMLPG 478