BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0105.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporte... 457 e-126 ref|ZP_08272674.1| ABC-type nitrate/sulfonate/bicarbonate transp... 381 e-104 ref|YP_001638734.1| binding-protein-dependent transport systems ... 350 2e-94 ref|YP_001923918.1| ABC transporter inner membrane protein [Meth... 348 5e-94 ref|YP_001381032.1| binding-protein-dependent transport systems ... 347 2e-93 >ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61900.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 268/273 (98%), Positives = 272/273 (99%) Query: 1 MAKNNKGSFLQGLLVPIVVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYEPE 60 MAK NKGSFLQGLLVPI+VIALWEGASRAGWINPQILPSPWAVL+KWVEYATPLKPY+PE Sbjct: 1 MAKKNKGSFLQGLLVPIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPE 60 Query: 61 AGSWLAWAFSGELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIR 120 AGSWLAWAFSGEL+MDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIR Sbjct: 61 AGSWLAWAFSGELVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIR 120 Query: 121 PIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ 180 PIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ Sbjct: 121 PIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ 180 Query: 181 STLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKII 240 STLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKII Sbjct: 181 STLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKII 240 Query: 241 AGMITIGLLGLAIDLGMSRLNNYMLRWHRGLEN 273 AGMITIGLLGLAIDLGMSRLNNYMLRWHRGLEN Sbjct: 241 AGMITIGLLGLAIDLGMSRLNNYMLRWHRGLEN 273 >ref|ZP_08272674.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF33852.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Oxalobacteraceae bacterium IMCC9480] Length = 273 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 203/262 (77%), Positives = 235/262 (89%) Query: 12 GLLVPIVVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYEPEAGSWLAWAFSG 71 GL+VP+V IA+W+ S GW+N +LPSP+AVL KW EY PL PY ++GSWL WAFSG Sbjct: 12 GLVVPVVAIAIWQTFSSMGWVNALVLPSPYAVLHKWFEYLLPLTPYSADSGSWLKWAFSG 71 Query: 72 ELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLA 131 EL++D S+YRVV GFL+GAGLALPLGL MG+S+R+Y +N +QV+RPIPPIAYIPL+ Sbjct: 72 ELLIDTFNSMYRVVVGFLVGAGLALPLGLSMGASKRVYAWLNPLMQVLRPIPPIAYIPLS 131 Query: 132 ILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPA 191 ILWFGLGNPPA+FLI++GAFFPVL+NTIAGVR VDSIYLRAARNLGASQSTLFLRVMLPA Sbjct: 132 ILWFGLGNPPAVFLIAIGAFFPVLINTIAGVRNVDSIYLRAARNLGASQSTLFLRVMLPA 191 Query: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 AVPYILSGVRIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGMI+IG+LGL Sbjct: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMISIGMLGL 251 Query: 252 AIDLGMSRLNNYMLRWHRGLEN 273 IDL ++RLNN++LRWHRGLEN Sbjct: 252 VIDLAVTRLNNHLLRWHRGLEN 273 >ref|YP_001638734.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium extorquens PA1] ref|YP_002420230.1| binding-protein-dependent transporters inner membrane component [Methylobacterium chloromethanicum CM4] gb|ABY29663.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium extorquens PA1] gb|ACK82302.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium chloromethanicum CM4] Length = 273 Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats. Identities = 187/263 (71%), Positives = 223/263 (84%) Query: 11 QGLLVPIVVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYEPEAGSWLAWAFS 70 +G+ VP+ ++ +W+ A AG +NP +LPSP AV +W Y PL+ Y+PE GSW AW FS Sbjct: 11 EGMAVPVAILVIWQLACTAGLVNPMVLPSPAAVAVRWWAYLAPLEAYDPEHGSWFAWLFS 70 Query: 71 GELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPL 130 GE++ DA+ SLYRVV GF +GAGLALPLGL MGSS IY +N +QV+RPIPPIAYIPL Sbjct: 71 GEMLHDAMASLYRVVVGFAVGAGLALPLGLFMGSSDLIYRHINPLMQVLRPIPPIAYIPL 130 Query: 131 AILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLP 190 +ILWFGLGN PA+FLI++GAFFPVLMNTIAGVR VD IY+RAAR+LGAS+ T+F RV+LP Sbjct: 131 SILWFGLGNAPAVFLIAIGAFFPVLMNTIAGVRHVDGIYIRAARSLGASRMTIFRRVILP 190 Query: 191 AAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLG 250 AA PYILSG RIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGM+TIG LG Sbjct: 191 AATPYILSGARIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMLTIGALG 250 Query: 251 LAIDLGMSRLNNYMLRWHRGLEN 273 L ID+ +SRLNN++LRWHRGLE+ Sbjct: 251 LVIDMAVSRLNNHLLRWHRGLES 273 >ref|YP_001923918.1| ABC transporter inner membrane protein [Methylobacterium populi BJ001] gb|ACB79383.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium populi BJ001] Length = 273 Score = 348 bits (893), Expect = 5e-94, Method: Composition-based stats. Identities = 187/263 (71%), Positives = 222/263 (84%) Query: 11 QGLLVPIVVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYEPEAGSWLAWAFS 70 +G VP+ V+ +W+ A AG +NP +LPSP AV +W Y PL+ Y+P GSW W FS Sbjct: 11 EGFAVPLAVLVIWQLACTAGLVNPMVLPSPAAVAARWWAYLAPLEAYDPAQGSWFLWLFS 70 Query: 71 GELIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPL 130 GE++ DA+ SLYRVV GFL+GAGLALPLGL MG+S IY +N +QV+RPIPPIAYIPL Sbjct: 71 GEMLHDALASLYRVVVGFLVGAGLALPLGLFMGTSDVIYRHINPLMQVLRPIPPIAYIPL 130 Query: 131 AILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLP 190 +ILWFGLGN PA+FLI++GAFFPVLMNTIAGVR VD IY+RAAR+LGAS+ T+F RV+LP Sbjct: 131 SILWFGLGNAPAVFLIAIGAFFPVLMNTIAGVRHVDGIYIRAARSLGASRMTIFRRVILP 190 Query: 191 AAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLG 250 AA PYILSG RIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGM+TIG LG Sbjct: 191 AATPYILSGARIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMLTIGALG 250 Query: 251 LAIDLGMSRLNNYMLRWHRGLEN 273 L ID+G+SRLNN++LRWHRGLE+ Sbjct: 251 LIIDMGVSRLNNHLLRWHRGLES 273 >ref|YP_001381032.1| binding-protein-dependent transport systems inner membrane component [Anaeromyxobacter sp. Fw109-5] gb|ABS28048.1| binding-protein-dependent transport systems inner membrane component [Anaeromyxobacter sp. Fw109-5] Length = 274 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 190/260 (73%), Positives = 223/260 (85%) Query: 13 LLVPIVVIALWEGASRAGWINPQILPSPWAVLKKWVEYATPLKPYEPEAGSWLAWAFSGE 72 LLVP +VIA WEG SRAGW++P +LP+P VL +W++YA PL PY+P GS LAW FSGE Sbjct: 14 LLVPAIVIAAWEGISRAGWVSPIVLPAPSQVLLRWIDYARPLAPYDPAEGSRLAWIFSGE 73 Query: 73 LIMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAI 132 L DA+ SL RV GF +GA LALPLGLLMG+ +Y LMN VQ++RPIPPIAYIPLAI Sbjct: 74 LPHDALASLIRVAGGFALGAVLALPLGLLMGAKPMVYELMNPLVQILRPIPPIAYIPLAI 133 Query: 133 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAA 192 LWFGLGNPPA FLISLGAFFP+LMNTIAGVR VD+IYLRAA+NLGAS+ TLF R+M+PAA Sbjct: 134 LWFGLGNPPAFFLISLGAFFPILMNTIAGVRNVDAIYLRAAKNLGASEWTLFWRIMIPAA 193 Query: 193 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 252 +PYIL+GVRIGIG AFIVVIVAEMIAV++GLG+RI+EAREYFWSDK+IAGMI+IGL GL Sbjct: 194 MPYILAGVRIGIGVAFIVVIVAEMIAVNSGLGYRILEAREYFWSDKVIAGMISIGLAGLG 253 Query: 253 IDLGMSRLNNYMLRWHRGLE 272 ID M+RLN ++LRWHRG+E Sbjct: 254 IDFFMNRLNGWLLRWHRGME 273