BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0102.p         (99 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773811.1| hypothetical protein Hsero_0378 [Herbaspiril...   121   5e-26
ref|YP_001354673.1| hypothetical protein mma_2983 [Janthinobacte...    59   2e-07
ref|YP_001101012.1| putative periplasmic protein [Herminiimonas ...    55   3e-06
ref|YP_004754530.1| hypothetical protein CFU_3884 [Collimonas fu...    54   6e-06

>ref|YP_003773811.1| hypothetical protein Hsero_0378 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61903.1| exported protein [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/99 (74%), Positives = 77/99 (77%), Gaps = 5/99 (5%)

Query: 1  MKYLIWLVVLLAVVVWFQRAKKSMLAGSDRPTDGNPAAAEPEPGMPRPKPSRFRRRGDSN 60
          MKYLIWLVVLLAVVVWFQRAKKSMLAG+D   D     A PE G+PRPK    RR  +  
Sbjct: 1  MKYLIWLVVLLAVVVWFQRAKKSMLAGNDAAAD-----ARPESGIPRPKAGGTRRSAEPG 55

Query: 61 VETMVQCAHCGIHFPASEAVVHASGAQYCCEEHRRLASF 99
           ETMVQCAHCGIHFP SEAVVHASGA YC EEHRRLASF
Sbjct: 56 AETMVQCAHCGIHFPVSEAVVHASGALYCSEEHRRLASF 94


>ref|YP_001354673.1| hypothetical protein mma_2983 [Janthinobacterium sp. Marseille]
 gb|ABR91788.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 79

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 21/95 (22%)

Query: 1  MKYLIWLVVLLAVVVWFQRAKKSMLAGSDRPTDGNPAAAEPEPGMPRPKPSRFRRRGDSN 60
          MK+L+W  V++AV+ W  R+KK+  +  + P      +A PE                  
Sbjct: 1  MKFLLWAGVIVAVI-WILRSKKA--SKVEPPRQAKTPSATPE------------------ 39

Query: 61 VETMVQCAHCGIHFPASEAVVHASGAQYCCEEHRR 95
          +E+M+ CAHCG HFPASEAV   S   +C +EHRR
Sbjct: 40 IESMLSCAHCGTHFPASEAVRDTSSRAFCSDEHRR 74


>ref|YP_001101012.1| putative periplasmic protein [Herminiimonas arsenicoxydans]
 emb|CAL62891.1| conserved hypothetical protein; putative exported protein
          [Herminiimonas arsenicoxydans]
          Length = 78

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 22/95 (23%)

Query: 1  MKYLIWLVVLLAVVVWFQRAKKSMLAGSDRPTDGNPAAAEPEPGMPRPKPSRFRRRGDSN 60
          MK L+W  ++LAV+ W  R+KKS     +        AA P P              D  
Sbjct: 1  MKLLLWAAIILAVI-WILRSKKSSAKADN--------AAPPRPA-------------DDA 38

Query: 61 VETMVQCAHCGIHFPASEAVVHASGAQYCCEEHRR 95
           E M+ CA+C  +FPASEAV  AS   +C  EHRR
Sbjct: 39 AEVMLSCAYCKTYFPASEAVFDASHTAFCSAEHRR 73


>ref|YP_004754530.1| hypothetical protein CFU_3884 [Collimonas fungivorans Ter331]
 gb|AEK63707.1| conserved hypothetical protein [Collimonas fungivorans Ter331]
          Length = 89

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 62 ETMVQCAHCGIHFPASEAVVHASGAQYCCEEHRRLAS 98
          E +V CAHCG+HFPASEA+  ASGA +C  EHRRL S
Sbjct: 52 EAIVACAHCGLHFPASEALADASGAVFCSAEHRRLHS 88