BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0101.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripeptide amidase [... 374 e-102 ref|YP_004754526.1| N-acetylmuramoyl-L-alanine amidase [Collimon... 274 5e-72 ref|ZP_04577702.1| N-acetyl-anhydromuranmyl-L-alanine amidase [O... 253 2e-65 ref|ZP_04579861.1| N-acetyl-anhydromuranmyl-L-alanine amidase [O... 251 4e-65 ref|ZP_08272683.1| N-acetylmuramoyl-L-alanine amidase [Oxalobact... 249 1e-64 >ref|YP_003773812.1| anhydro-N-acetylmuramyl-tripeptide amidase [Herbaspirillum seropedicae SmR1] gb|ADJ61904.1| anhydro-N-acetylmuramyl-tripeptide amidase protein [Herbaspirillum seropedicae SmR1] Length = 207 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 176/207 (85%), Positives = 188/207 (90%) Query: 1 MDAVFSDPGAWIIDGDGWCDHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIA 60 M A +DP AW IDG+GWC ARREPSPNCD+RPEGV ++LLVIHNISLPPGEFGG YIA Sbjct: 1 MTAAVTDPAAWSIDGEGWCQGARREPSPNCDDRPEGVVSQLLVIHNISLPPGEFGGSYIA 60 Query: 61 DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN 120 DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN Sbjct: 61 DLFCNRLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCN 120 Query: 121 DFSIGIELEGTDFEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDW 180 DFSIGIELEGTDF PFT AQY+ L+ LSQALV+RYGL+AVAGHEHIAP+RKTDPGPFFDW Sbjct: 121 DFSIGIELEGTDFTPFTPAQYDALLGLSQALVSRYGLSAVAGHEHIAPLRKTDPGPFFDW 180 Query: 181 DGYHNKMVKIVNAAQLRFPVGLHKSQA 207 Y +M+KIVN AQLRFP GLHKSQA Sbjct: 181 QRYREEMMKIVNPAQLRFPSGLHKSQA 207 >ref|YP_004754526.1| N-acetylmuramoyl-L-alanine amidase [Collimonas fungivorans Ter331] gb|AEK63703.1| N-acetylmuramoyl-L-alanine amidase [Collimonas fungivorans Ter331] Length = 213 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 138/198 (69%), Positives = 151/198 (76%), Gaps = 6/198 (3%) Query: 8 PGAWIIDGDGWC--DHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIADLFCN 65 P ++ I DGWC D R+ SPNCD RPEG AA+LLVIHNISLPPG+FGGPYIADLF N Sbjct: 9 PPSFEIGADGWCRPDEVVRQSSPNCDARPEGCAADLLVIHNISLPPGQFGGPYIADLFGN 68 Query: 66 RLDFDAHPYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCNDFSIG 125 RLD+DAHPYF+QLRPLRVS+HFLI RDG VVQFV A+ RAWHAG S FEGRERCNDFSIG Sbjct: 69 RLDYDAHPYFEQLRPLRVSSHFLILRDGGVVQFVSANDRAWHAGASCFEGRERCNDFSIG 128 Query: 126 IELEGTDFEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDWDGYHN 185 IELEG+DFE F+ QY L L+ AL RY L AVAGHEHIAP RKTDPGPFFDW Y Sbjct: 129 IELEGSDFEQFSALQYRALAALTHALQLRYPLAAVAGHEHIAPGRKTDPGPFFDWTQYQQ 188 Query: 186 KMV----KIVNAAQLRFP 199 + K A LRFP Sbjct: 189 ALAGHAPKSPGAPALRFP 206 >ref|ZP_04577702.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Oxalobacter formigenes HOxBLS] gb|EEO28664.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Oxalobacter formigenes HOxBLS] Length = 197 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 116/177 (65%), Positives = 137/177 (77%) Query: 13 IDGDGWCDHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIADLFCNRLDFDAH 72 ID +GWC A+R SPN +ERP +LLVIHNISLPPGEFGG I DLF NRLD + H Sbjct: 5 IDKEGWCQEAKRLVSPNQNERPLNQTIDLLVIHNISLPPGEFGGHCIVDLFLNRLDCNRH 64 Query: 73 PYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCNDFSIGIELEGTD 132 P+F+QLR L+VS+HFLI RDG ++QFV +RAWHAGVSS+ GR CNDFSIGIE+EGTD Sbjct: 65 PFFEQLRSLKVSSHFLIDRDGALIQFVSTEKRAWHAGVSSYRGRTGCNDFSIGIEIEGTD 124 Query: 133 FEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDWDGYHNKMVK 189 +EPF AQY+TLV L++AL RY L AV GH+HIAP RKTDPGPFF+W Y K+ K Sbjct: 125 YEPFMAAQYDTLVLLTEALCQRYPLQAVTGHQHIAPERKTDPGPFFNWARYQEKLEK 181 >ref|ZP_04579861.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Oxalobacter formigenes OXCC13] gb|EEO30834.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Oxalobacter formigenes OXCC13] Length = 195 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 116/171 (67%), Positives = 134/171 (78%) Query: 13 IDGDGWCDHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIADLFCNRLDFDAH 72 ID +GWC A R SPN ++RP+ +LLVIHNISLPPG+FGG IADLF NRLD +AH Sbjct: 3 IDKEGWCLQATRLASPNQNDRPDNQGIDLLVIHNISLPPGQFGGHCIADLFLNRLDCNAH 62 Query: 73 PYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCNDFSIGIELEGTD 132 P+FDQLR L+VS+HF IRRDG + QFV A +RAWHAGVSSF+GRE CNDFS+G+ELEGTD Sbjct: 63 PFFDQLRALKVSSHFFIRRDGSLFQFVSADKRAWHAGVSSFKGREGCNDFSVGVELEGTD 122 Query: 133 FEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDWDGY 183 F F QYETLV L+ AL RY L + GH+HIAPVRKTDPGPFFDW Y Sbjct: 123 FVSFEPEQYETLVSLTDALRRRYSLKTITGHQHIAPVRKTDPGPFFDWQLY 173 >ref|ZP_08272683.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33861.1| N-acetylmuramoyl-L-alanine amidase [Oxalobacteraceae bacterium IMCC9480] Length = 211 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 126/199 (63%), Positives = 141/199 (70%), Gaps = 12/199 (6%) Query: 13 IDGDGWCDHARREPSPNCDERPEGVAAELLVIHNISLPPGEFGGPYIADLFCNRLDFDAH 72 ID DGWC A++ SPNCD R +GVA +LLVIHNISLPPG++GGPYIA LF N LD DAH Sbjct: 13 IDADGWCAQAQQLRSPNCDVRADGVAIDLLVIHNISLPPGQYGGPYIAQLFTNTLDCDAH 72 Query: 73 PYFDQLRPLRVSAHFLIRRDGEVVQFVPAHRRAWHAGVSSFEGRERCNDFSIGIELEGTD 132 PYFDQLR LRVS+HF+IRRDG + QFV +RAWHAGVS F R+RCNDFSIGIELEG D Sbjct: 73 PYFDQLRALRVSSHFVIRRDGSLQQFVSTLQRAWHAGVSQFGERQRCNDFSIGIELEGCD 132 Query: 133 FEPFTEAQYETLVQLSQALVTRYGLTAVAGHEHIAPVRKTDPGPFFDWDGY--------- 183 EPF +AQY L QLS+AL + L AV GHEHIAP RKTDPG FDW GY Sbjct: 133 TEPFADAQYTRLCQLSRALQQAHPLLAVTGHEHIAPGRKTDPGACFDWLGYRTLWAADVP 192 Query: 184 ---HNKMVKIVNAAQLRFP 199 HN + V AQ P Sbjct: 193 SSAHNALPPFVTVAQKTQP 211