BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0099.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773814.1| transmembrane ribonucleoside reductase small... 733 0.0 ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobi... 723 0.0 ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit... 702 0.0 ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit... 701 0.0 ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic... 679 0.0 >ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 363/399 (90%), Positives = 368/399 (92%), Gaps = 14/399 (3%) Query: 1 MLSWDDEVKA-TPAPSAPHASQTPQPQLQSAAVNARPQF--SDVALNPALVTKDEAPVDV 57 MLSWDDE K AP P+ QPQLQ P F S+ ALNPAL+ + VD Sbjct: 1 MLSWDDEAKQPAQAPRTPNL----QPQLQ-------PAFGQSNAALNPALMAGNSEQVDT 49 Query: 58 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 117 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG Sbjct: 50 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 109 Query: 118 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 177 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY Sbjct: 110 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 169 Query: 178 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 237 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA Sbjct: 170 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 229 Query: 238 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 297 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW Sbjct: 230 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 289 Query: 298 TPEFRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGLDPLF 357 TPEFR+EIKSLFLRAVELEYRYAEDTMPRGVLGLNA MFK YLRFIANRRAQQIGLDPLF Sbjct: 290 TPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLF 349 Query: 358 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE Sbjct: 350 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388 >ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Collimonas fungivorans Ter331] gb|AEK63701.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Collimonas fungivorans Ter331] Length = 389 Score = 723 bits (1867), Expect = 0.0, Method: Composition-based stats. Identities = 353/400 (88%), Positives = 365/400 (91%), Gaps = 15/400 (3%) Query: 1 MLSWDDEVKATP--APSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAP--VD 56 MLSWD+E + P P+ P + A + RPQ SD ALNPALV + A VD Sbjct: 1 MLSWDEEKSSAPRTVPAQP-----------AFAPSGRPQMSDTALNPALVGQAAAAPAVD 49 Query: 57 VTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 116 VT RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN Sbjct: 50 VTHRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 109 Query: 117 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 176 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ Sbjct: 110 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 169 Query: 177 YIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVF 236 YIVESLGLDEAEIFNAYHEV SIRDKDEFLIPFI+TLTDPEFKTGT ENDQKLL+SLIVF Sbjct: 170 YIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPEFKTGTTENDQKLLRSLIVF 229 Query: 237 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHL 296 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+KMENPHL Sbjct: 230 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENPHL 289 Query: 297 WTPEFRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGLDPL 356 WTPEFRDEIK+LFL AVELEYRYAEDTMPRGVLGLNA MFKGYLRFIANRRAQQIGLDP+ Sbjct: 290 WTPEFRDEIKALFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPM 349 Query: 357 FAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 F QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE Sbjct: 350 FPQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 389 >ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 702 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 342/399 (85%), Positives = 362/399 (90%), Gaps = 7/399 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSA--AVNARPQFSDVALNPALVT-KDEAPVDV 57 MLSWD+E K P+AP A T QP LQ A R Q DVAL+PA++ K A VD Sbjct: 1 MLSWDEEAK----PAAPQAQPTLQPALQQVRDAAAQRVQAQDVALDPAVMAGKPAATVDP 56 Query: 58 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 117 TRR++AADKRIING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG Sbjct: 57 TRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 116 Query: 118 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 177 LT+DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY Sbjct: 117 LTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 176 Query: 178 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 237 IVESLGLDE EIFNAY+E+ SIRDKD+FLIPFID LTDP F TGT ENDQ LL+SLIVFA Sbjct: 177 IVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVFA 236 Query: 238 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 297 C+MEGLFFYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHLW Sbjct: 237 CLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLW 296 Query: 298 TPEFRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGLDPLF 357 TP+FRDEIK+LFLRAVELEYRYAEDTMPRGVLGLNA MFKGYLRFIANRRAQQIGL+P+F Sbjct: 297 TPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMF 356 Query: 358 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE Sbjct: 357 EQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395 >ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 343/396 (86%), Positives = 365/396 (92%), Gaps = 4/396 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTRR 60 MLSWD+EVK + A Q Q++ AA R Q DVAL+PALV KD A VD TRR Sbjct: 1 MLSWDEEVKPA---APAPALQPALQQVRDAAAQ-RLQTQDVALDPALVAKDAAAVDPTRR 56 Query: 61 VNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTE 120 ++AADKR+ING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLT+ Sbjct: 57 MDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTD 116 Query: 121 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 180 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE Sbjct: 117 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 176 Query: 181 SLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIM 240 SLGLDE EIFNAY+EV SIRDKD+FLIPFI+TLTDPEFKTGT ENDQKLL+SLIVFAC+M Sbjct: 177 SLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFACLM 236 Query: 241 EGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPE 300 EGLFFYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHLWTP+ Sbjct: 237 EGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLWTPQ 296 Query: 301 FRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGLDPLFAQE 360 FR+EIK+LFLRAVELEYRYAEDTMPRGVLGLNA MFKGYLRFIANRRAQQIGL+P+F QE Sbjct: 297 FREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFEQE 356 Query: 361 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE Sbjct: 357 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392 >ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 335/396 (84%), Positives = 355/396 (89%), Gaps = 6/396 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTRR 60 MLSWD+EV P+ +A L +A A +DVAL+P+LV + E D RR Sbjct: 27 MLSWDEEVTPAVNPAIRNAV------LPTAVTAATTAAADVALDPSLVPQAEPKADPARR 80 Query: 61 VNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTE 120 +NAADKRIING+TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PNGLT+ Sbjct: 81 MNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKSPNGLTD 140 Query: 121 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 180 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI E Sbjct: 141 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYITE 200 Query: 181 SLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACIM 240 SLGLDEAEIFNAYHEV SIRDKDEFLIPFID LTDP F TGT NDQKLLKSLIVF+C+M Sbjct: 201 SLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSLIVFSCLM 260 Query: 241 EGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPE 300 EGLFFYVGF QILALGRQNKM+GAAEQYQYILRDESMHCNFGIDL+NT+KMENPHLWTPE Sbjct: 261 EGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKMENPHLWTPE 320 Query: 301 FRDEIKSLFLRAVELEYRYAEDTMPRGVLGLNATMFKGYLRFIANRRAQQIGLDPLFAQE 360 FRDEIK+LFL AVELEYRYAEDTMPRGVLGLNA MFKGYLRFIANRRAQQIGL+P+F E Sbjct: 321 FRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFENE 380 Query: 361 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE Sbjct: 381 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416