BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0094.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773538.1| 50s ribosomal protein L7/L12 [Herbaspirillum...   119   2e-25
ref|ZP_04579988.1| large subunit ribosomal protein L7/L12 [Oxalo...   118   2e-25
ref|ZP_04577838.1| LSU ribosomal protein L7/L12 [Oxalobacter for...   117   7e-25
ref|YP_002006943.1| 50S ribosomal protein l7/l12 [Cupriavidus ta...   117   7e-25
ref|YP_727934.1| 50S ribosomal protein L7/L12 [Ralstonia eutroph...   117   7e-25

>ref|YP_003773538.1| 50s ribosomal protein L7/L12 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61630.1| 50s ribosomal subunit L7/L12 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 126

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 122/126 (96%), Positives = 122/126 (96%), Gaps = 1/126 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAA-EEQTEF 59
           MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGG AG  AAA EEQTEF
Sbjct: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGAAGGGAAAAEEQTEF 60

Query: 60  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 119
           TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG
Sbjct: 61  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 120

Query: 120 AKAELK 125
           AKAELK
Sbjct: 121 AKAELK 126


>ref|ZP_04579988.1| large subunit ribosomal protein L7/L12 [Oxalobacter formigenes
           OXCC13]
 gb|EEO30961.1| large subunit ribosomal protein L7/L12 [Oxalobacter formigenes
           OXCC13]
          Length = 126

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 102/126 (80%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAA-EEQTEF 59
           MA+SKEDILEAVGA+SVMELNDLVKAFEEKFGVSAAAMA     G   A  AA EEQTEF
Sbjct: 1   MAMSKEDILEAVGAMSVMELNDLVKAFEEKFGVSAAAMAVAGPAGAGAAGGAAAEEQTEF 60

Query: 60  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 119
           T+VLAE GANKV VIKAVREITGLGLKEAKD+VD APKP+KEG++KADAE AKKKLEEAG
Sbjct: 61  TIVLAEFGANKVSVIKAVREITGLGLKEAKDMVDSAPKPIKEGVSKADAEEAKKKLEEAG 120

Query: 120 AKAELK 125
           AK E+K
Sbjct: 121 AKVEIK 126


>ref|ZP_04577838.1| LSU ribosomal protein L7/L12 [Oxalobacter formigenes HOxBLS]
 gb|EEO28800.1| LSU ribosomal protein L7/L12 [Oxalobacter formigenes HOxBLS]
          Length = 126

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 105/126 (83%), Positives = 112/126 (88%), Gaps = 1/126 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAA-EEQTEF 59
           MA+SKEDILEAVGA+SVMELNDLVKAFEEKFGVSAAAMA     GGA A  AA EEQTEF
Sbjct: 1   MAMSKEDILEAVGAMSVMELNDLVKAFEEKFGVSAAAMAVAGPAGGAAAGGAAAEEQTEF 60

Query: 60  TVVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAG 119
           TVVLAE GANKV VIKAVREITGLGLKEAKD+VD APKPVKEG++KADAE AKKKLE+AG
Sbjct: 61  TVVLAEFGANKVAVIKAVREITGLGLKEAKDMVDSAPKPVKEGVSKADAEEAKKKLEDAG 120

Query: 120 AKAELK 125
           AK E+K
Sbjct: 121 AKVEIK 126


>ref|YP_002006943.1| 50S ribosomal protein l7/l12 [Cupriavidus taiwanensis LMG 19424]
 sp|B3R7T7|RL7_CUPTR RecName: Full=50S ribosomal protein L7/L12
 emb|CAQ70882.1| 50S ribosomal subunit protein L7/L12 [Cupriavidus taiwanensis LMG
           19424]
          Length = 124

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 105/125 (84%), Positives = 113/125 (90%), Gaps = 1/125 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAI+K+DILEAVGA+SVMELNDLVKAFEEKFGVSAAAMA  AA  GA  AAAAEEQTEF 
Sbjct: 1   MAITKDDILEAVGAMSVMELNDLVKAFEEKFGVSAAAMAV-AAAPGAAGAAAAEEQTEFN 59

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           V+LAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEG+ KA A  AKKKLE+AGA
Sbjct: 60  VILAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGVDKAAAAEAKKKLEDAGA 119

Query: 121 KAELK 125
           K ++K
Sbjct: 120 KVDVK 124


>ref|YP_727934.1| 50S ribosomal protein L7/L12 [Ralstonia eutropha H16]
 ref|YP_004687228.1| 50S ribosomal protein L7/L12 [Cupriavidus necator N-1]
 sp|Q0K605|RL7_RALEH RecName: Full=50S ribosomal protein L7/L12
 emb|CAJ94566.1| LSU ribosomal protein L7/L12 [Ralstonia eutropha H16]
 gb|AEI78747.1| 50S ribosomal protein L7/L12 [Cupriavidus necator N-1]
          Length = 124

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 106/125 (84%), Positives = 114/125 (91%), Gaps = 1/125 (0%)

Query: 1   MAISKEDILEAVGALSVMELNDLVKAFEEKFGVSAAAMAAPAAGGGAGAAAAAEEQTEFT 60
           MAI+K+DILEAVGA+SVMELNDLVKAFEEKFGVSAAAMA  AA  GAG AAAAEEQTEF 
Sbjct: 1   MAITKDDILEAVGAMSVMELNDLVKAFEEKFGVSAAAMAV-AAAPGAGGAAAAEEQTEFN 59

Query: 61  VVLAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGA 120
           V+LAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEG+ KA A  AKKKLE+AGA
Sbjct: 60  VILAEVGANKVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGVDKAAAAEAKKKLEDAGA 119

Query: 121 KAELK 125
           K ++K
Sbjct: 120 KVDVK 124