BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0092.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773536.1| 50s ribosomal protein L1 [Herbaspirillum ser... 355 2e-96 ref|ZP_08274678.1| LSU ribosomal protein L1p (L10Ae) [Oxalobacte... 350 1e-94 ref|YP_004751051.1| 50S ribosomal protein L1p (L10Ae) [Collimona... 344 5e-93 ref|YP_001101406.1| 50S ribosomal protein L1 [Herminiimonas arse... 343 1e-92 ref|ZP_04579986.1| large subunit ribosomal protein L1 [Oxalobact... 335 2e-90 >ref|YP_003773536.1| 50s ribosomal protein L1 [Herbaspirillum seropedicae SmR1] gb|ADJ61628.1| 50s ribosomal subunit L1 protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR Sbjct: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 Query: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT Sbjct: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF Sbjct: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 Query: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA Sbjct: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231 >ref|ZP_08274678.1| LSU ribosomal protein L1p (L10Ae) [Oxalobacteraceae bacterium IMCC9480] gb|EGF31849.1| LSU ribosomal protein L1p (L10Ae) [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 207/231 (89%), Positives = 222/231 (96%) Query: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 MAK+SKR+KA+K KVDRTKAYPFDNAVSLIKE ATAKFNESIDVSVQLGVDAKKSDQVVR Sbjct: 1 MAKLSKRIKAIKAKVDRTKAYPFDNAVSLIKELATAKFNESIDVSVQLGVDAKKSDQVVR 60 Query: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 GSVVLPAGTGK+VRVAVFA+G+KAE AKAAGAD+VGMEDLAE++KAG+MPFDIVIASPDT Sbjct: 61 GSVVLPAGTGKSVRVAVFATGEKAEQAKAAGADIVGMEDLAEQIKAGNMPFDIVIASPDT 120 Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDK GIIHATIGRKSF Sbjct: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKGGIIHATIGRKSF 180 Query: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231 +D LK+NL+ALIDALNKAKP SSKGVYLRK++LSSTMGAGVRVD ASLA Sbjct: 181 TDEALKSNLVALIDALNKAKPTSSKGVYLRKVSLSSTMGAGVRVDHASLAG 231 >ref|YP_004751051.1| 50S ribosomal protein L1p (L10Ae) [Collimonas fungivorans Ter331] gb|AEK60228.1| LSU ribosomal protein L1p (L10Ae) [Collimonas fungivorans Ter331] Length = 231 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 208/231 (90%), Positives = 225/231 (97%) Query: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 MAK++KR KA+K KVDRTKAYPFDNAV+LIKE ATAKFNESIDVSVQLGVDAKKSDQVVR Sbjct: 1 MAKLTKRAKAIKAKVDRTKAYPFDNAVALIKECATAKFNESIDVSVQLGVDAKKSDQVVR 60 Query: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 GSVVLPAGTGKTVRVAVFASG+KAE AKAAGAD+VGMEDLAE++KAG+MPFDIVIASPDT Sbjct: 61 GSVVLPAGTGKTVRVAVFASGEKAEQAKAAGADIVGMEDLAEQIKAGNMPFDIVIASPDT 120 Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 MRIVGTLGQILGPRGLMPNPKVGTVT DVATAVKNAKAGQVQYRTDK+GI+HATIGRKSF Sbjct: 121 MRIVGTLGQILGPRGLMPNPKVGTVTADVATAVKNAKAGQVQYRTDKAGIVHATIGRKSF 180 Query: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231 SDA+LK+NLLALIDAL+KAKPA+SKGVYLRKI+LSSTMGAGVRVDQ +LAA Sbjct: 181 SDAELKSNLLALIDALSKAKPATSKGVYLRKISLSSTMGAGVRVDQTTLAA 231 >ref|YP_001101406.1| 50S ribosomal protein L1 [Herminiimonas arsenicoxydans] sp|A4G9U8|RL1_HERAR RecName: Full=50S ribosomal protein L1 emb|CAL63285.1| 50S ribosomal subunit protein L1 [Herminiimonas arsenicoxydans] Length = 231 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 203/231 (87%), Positives = 221/231 (95%) Query: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 MAK+SKRVKA K KVDRTKAYPFDNA++LIKE A+AKFNESIDVSVQLGVDAKKSDQVVR Sbjct: 1 MAKLSKRVKAFKAKVDRTKAYPFDNALALIKECASAKFNESIDVSVQLGVDAKKSDQVVR 60 Query: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 GSVVLPAGTGK VRVAVFA+G+KAE AKAAGAD+VGMEDLAE +KAG+MPFDIVIASPDT Sbjct: 61 GSVVLPAGTGKDVRVAVFATGEKAEQAKAAGADIVGMEDLAESIKAGNMPFDIVIASPDT 120 Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 MRIVGTLGQILGPRG+MPNPKVGTVTPDVATAVKNAKAGQVQYRTDK+GIIHATIGRKSF Sbjct: 121 MRIVGTLGQILGPRGMMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKAGIIHATIGRKSF 180 Query: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLAA 231 +D LK+NLLALIDAL KAKPA+SKGVYLRK++LSSTMGAGVR+DQ +LAA Sbjct: 181 TDEALKSNLLALIDALTKAKPATSKGVYLRKVSLSSTMGAGVRIDQTTLAA 231 >ref|ZP_04579986.1| large subunit ribosomal protein L1 [Oxalobacter formigenes OXCC13] gb|EEO30959.1| large subunit ribosomal protein L1 [Oxalobacter formigenes OXCC13] Length = 231 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 195/230 (84%), Positives = 218/230 (94%) Query: 1 MAKVSKRVKAMKEKVDRTKAYPFDNAVSLIKEFATAKFNESIDVSVQLGVDAKKSDQVVR 60 MAK SKRV+A +EK+D TK YP D+A++L+KEFATAKFNESIDV+VQLGVD KKSDQVVR Sbjct: 1 MAKASKRVRAFQEKLDSTKVYPIDDALALLKEFATAKFNESIDVAVQLGVDPKKSDQVVR 60 Query: 61 GSVVLPAGTGKTVRVAVFASGDKAEAAKAAGADVVGMEDLAERVKAGDMPFDIVIASPDT 120 GSVVLPAGTGKTVRVAVFASG+KA+ AKAAGAD+VGME+LA ++K GDMPFDIVIASPDT Sbjct: 61 GSVVLPAGTGKTVRVAVFASGEKADQAKAAGADIVGMEELAAQIKGGDMPFDIVIASPDT 120 Query: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDKSGIIHATIGRKSF 180 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTD++GIIHATIGRKSF Sbjct: 121 MRIVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRTDRAGIIHATIGRKSF 180 Query: 181 SDADLKANLLALIDALNKAKPASSKGVYLRKIALSSTMGAGVRVDQASLA 230 SDADLK+NL +LIDALNKAKP SSKG Y+RKI++SSTMGAGVRVDQA++A Sbjct: 181 SDADLKSNLSSLIDALNKAKPVSSKGTYIRKISISSTMGAGVRVDQATIA 230