BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0091.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773535.1| 50s ribosomal protein L11 [Herbaspirillum se...   235   2e-60
gb|EGW62338.1| ribosomal protein L11 [Dechlorosoma suillum PS]        228   2e-58
emb|CBJ36565.1| 50S ribosomal subunit protein L11, N-terminal be...   227   4e-58
ref|ZP_08274679.1| LSU ribosomal protein L11p (L12e) [Oxalobacte...   226   8e-58
ref|YP_283537.1| 50S ribosomal protein L11 [Dechloromonas aromat...   224   3e-57

>ref|YP_003773535.1| 50s ribosomal protein L11 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61627.1| 50s ribosomal subunit L11 protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  235 bits (599), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 142/143 (99%), Positives = 143/143 (100%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT
Sbjct: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMKTPPATILIKKAAGIQKGS+KPHTDKVGKITRKQAEEIATQKKPDLTAA
Sbjct: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSSKPHTDKVGKITRKQAEEIATQKKPDLTAA 120

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           DLEAAVRTIAGSARSMGITVEGL
Sbjct: 121 DLEAAVRTIAGSARSMGITVEGL 143


>gb|EGW62338.1| ribosomal protein L11 [Dechlorosoma suillum PS]
          Length = 143

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 137/143 (95%), Positives = 138/143 (96%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT
Sbjct: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITR Q E+IA  K PDLTAA
Sbjct: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRAQCEDIAKAKSPDLTAA 120

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           DLEAAVRTIAGSARSMGITVEGL
Sbjct: 121 DLEAAVRTIAGSARSMGITVEGL 143


>emb|CBJ36565.1| 50S ribosomal subunit protein L11, N-terminal believed to regulate
           RelA [Ralstonia solanacearum CMR15]
          Length = 161

 Score =  227 bits (579), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 130/143 (90%), Positives = 138/143 (96%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIGFIKLQ+PAGKANPSPP+GPALGQRGLNIMEFCKAFNAQTQG+EPGLP+PVVIT
Sbjct: 19  MAKKIIGFIKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAQTQGMEPGLPVPVVIT 78

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMK+PPAT+LIKKAAG+QKGSAKPHTDKVGKITR QAEEIA  K  DLTAA
Sbjct: 79  AFADKSFTFVMKSPPATVLIKKAAGVQKGSAKPHTDKVGKITRAQAEEIAKAKNADLTAA 138

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           DL+AAVRTIAGSARSMGITVEGL
Sbjct: 139 DLDAAVRTIAGSARSMGITVEGL 161


>ref|ZP_08274679.1| LSU ribosomal protein L11p (L12e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31850.1| LSU ribosomal protein L11p (L12e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 143

 Score =  226 bits (577), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 135/143 (94%), Positives = 139/143 (97%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT
Sbjct: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMKTPPATILIKKAAGI KGS KPHTDKVG ITRKQAEEIATQK+PDLTAA
Sbjct: 61  AFADKSFTFVMKTPPATILIKKAAGITKGSPKPHTDKVGSITRKQAEEIATQKRPDLTAA 120

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           D++AAVR IAGSARSMGITVEG+
Sbjct: 121 DMDAAVRIIAGSARSMGITVEGM 143


>ref|YP_283537.1| 50S ribosomal protein L11 [Dechloromonas aromatica RCB]
 sp|Q47JB4|RL11_DECAR RecName: Full=50S ribosomal protein L11
 gb|AAZ45067.1| LSU ribosomal protein L11P [Dechloromonas aromatica RCB]
          Length = 143

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 133/143 (93%), Positives = 137/143 (95%)

Query: 1   MAKKIIGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60
           MAKKIIG+IKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT
Sbjct: 1   MAKKIIGYIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVIT 60

Query: 61  AFADKSFTFVMKTPPATILIKKAAGIQKGSAKPHTDKVGKITRKQAEEIATQKKPDLTAA 120
           AFADKSFTFVMKTPPATILIKKAAGI+ GSAKPHTDKVGKITR Q EEIA  K PDLTAA
Sbjct: 61  AFADKSFTFVMKTPPATILIKKAAGIKSGSAKPHTDKVGKITRAQCEEIAKTKSPDLTAA 120

Query: 121 DLEAAVRTIAGSARSMGITVEGL 143
           D+EAA+RTIAGSARSMGITVEGL
Sbjct: 121 DMEAAIRTIAGSARSMGITVEGL 143