BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0090.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773534.1| transcription antitermination protein [Herba... 362 2e-98 ref|YP_004751049.1| transcription antitermination protein [Colli... 308 3e-82 emb|CAL63287.2| Transcription antitermination protein NusG [Herm... 301 3e-80 ref|YP_001355115.1| transcription antitermination protein NusG [... 301 4e-80 ref|YP_004028678.1| transcription antitermination protein nusG [... 300 5e-80 >ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 362 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 192/196 (97%), Positives = 192/196 (97%) Query: 1 MSDSTQDSAPIGAQSVSSAGNKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 MSDSTQDSAPIGAQSVS AG KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP Sbjct: 1 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 Query: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPQ 120 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLP Sbjct: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120 Query: 121 REVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 EVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF Sbjct: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 Query: 181 GRATPVELEFGQLEKV 196 GRATPVELEFGQLEKV Sbjct: 181 GRATPVELEFGQLEKV 196 >ref|YP_004751049.1| transcription antitermination protein [Collimonas fungivorans Ter331] gb|AEK60226.1| Transcription antitermination protein [Collimonas fungivorans Ter331] Length = 199 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 164/199 (82%), Positives = 182/199 (91%), Gaps = 3/199 (1%) Query: 1 MSDSTQDSAP---IGAQSVSSAGNKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQI 57 MSDSTQD A A ++AG KRWYVVHAYSGMEKSVQRALTERI+RAGMQEQFGQI Sbjct: 1 MSDSTQDDAQGTPAAATPSAAAGKKRWYVVHAYSGMEKSVQRALTERIDRAGMQEQFGQI 60 Query: 58 LVPTEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTP 117 LVPTEEV+++KNG K+VTERRFFPGYVLVEMEMTDETWHLVKNT KVTGFIGGKSN+PTP Sbjct: 61 LVPTEEVIEVKNGQKAVTERRFFPGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTP 120 Query: 118 LPQREVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSV 177 +PQ EVD +++QMQ+G+EKPRPKVLYEVGE+VRIKEG FTDFNGNVEEVNYEKSRVRV+V Sbjct: 121 IPQHEVDKIMQQMQDGIEKPRPKVLYEVGELVRIKEGAFTDFNGNVEEVNYEKSRVRVTV 180 Query: 178 TIFGRATPVELEFGQLEKV 196 TIFGRATPVELEF ++EKV Sbjct: 181 TIFGRATPVELEFDKVEKV 199 >emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas arsenicoxydans] Length = 192 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 155/175 (88%), Positives = 169/175 (96%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSV RALTERI RAGMQ+QFGQILVPTEEV+++KNG KSV+ERRFFP Sbjct: 18 KRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFFP 77 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPQREVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNT+KVTGFIGGKSN+PTP+P EVD +++QMQEGVEKPRPKV Sbjct: 78 GYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPKV 137 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 LYEVGEMVRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 138 LYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192 >ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp. Marseille] gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille] Length = 199 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 152/179 (84%), Positives = 169/179 (94%) Query: 18 SAGNKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTER 77 S KRWYVVHAYSGMEKSVQRAL ER RAGM+++FGQILVPTEEV+++KNGHKSV+ER Sbjct: 21 STSKKRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSER 80 Query: 78 RFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPQREVDSLLRQMQEGVEKP 137 RFFPGYVLVEMEMTDETWHLVKNT KVTGFIGGKSN+PTP+P EVD +++QMQ+GVEKP Sbjct: 81 RFFPGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKP 140 Query: 138 RPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 RPKVLYEVGE+VRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 141 RPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199 >ref|YP_004028678.1| transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] emb|CBW74534.1| Transcription antitermination protein nusG [Burkholderia rhizoxinica HKI 454] Length = 185 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 155/184 (84%), Positives = 172/184 (93%) Query: 13 AQSVSSAGNKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHK 72 + S +S+G KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK Sbjct: 2 SDSAASSGGKRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHK 61 Query: 73 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPQREVDSLLRQMQE 132 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ QREVD ++ QMQE Sbjct: 62 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQE 121 Query: 133 GVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 192 GVEKPRPK L+EVGE+VR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ Sbjct: 122 GVEKPRPKTLFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 181 Query: 193 LEKV 196 +EKV Sbjct: 182 VEKV 185