BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0089.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773533.1| preprotein translocase SecE subunit transmem...   189   1e-46
ref|ZP_08274681.1| Preprotein translocase subunit SecE [Oxalobac...   170   5e-41
ref|YP_001355116.1| preprotein translocase SecE subunit [Janthin...   163   1e-38
ref|YP_001101409.1| preprotein translocase membrane subunit [Her...   158   2e-37
ref|YP_004751048.1| preprotein translocase subunit SecE [Collimo...   154   5e-36

>ref|YP_003773533.1| preprotein translocase SecE subunit transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ61625.1| preprotein translocase SecE subunit transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 126

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60
           MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT
Sbjct: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60

Query: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120
           SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD
Sbjct: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120

Query: 121 VILGWK 126
           VILGWK
Sbjct: 121 VILGWK 126


>ref|ZP_08274681.1| Preprotein translocase subunit SecE [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31852.1| Preprotein translocase subunit SecE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 127

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/126 (75%), Positives = 115/126 (91%)

Query: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60
           MS+QPVQTV+TS+DK+K+ALA+ AV+AGVV F+VL+D+S+ VRA ALV GL+VAV FAWT
Sbjct: 1   MSNQPVQTVSTSSDKLKVALAVCAVIAGVVAFYVLADKSSIVRASALVFGLIVAVGFAWT 60

Query: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120
           S QG+ F+ FA E+VRETKKVVWPTRKEAMQITA+VF FVL+MA+FLWGTDKLLEF+LYD
Sbjct: 61  STQGKEFLNFASEAVRETKKVVWPTRKEAMQITAIVFCFVLVMALFLWGTDKLLEFILYD 120

Query: 121 VILGWK 126
           +ILGWK
Sbjct: 121 LILGWK 126


>ref|YP_001355116.1| preprotein translocase SecE subunit [Janthinobacterium sp.
           Marseille]
 gb|ABR88845.1| preprotein translocase SecE subunit [Janthinobacterium sp.
           Marseille]
          Length = 127

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/126 (72%), Positives = 111/126 (88%)

Query: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60
           M++QPV+TV  S DKIKI LAI+A +AGVVGF+ LSD++T VRA ALV GL+VA+A AWT
Sbjct: 1   MANQPVETVGASGDKIKIVLAILAAIAGVVGFYFLSDKATAVRAAALVGGLVVAIAIAWT 60

Query: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120
           SA GR F+ F+KE+VRETKKVVWPTRKEA+Q+TA+VF FVL+MA+FLWGTDKLLE +LYD
Sbjct: 61  SAAGRDFLNFSKEAVRETKKVVWPTRKEALQMTAIVFGFVLVMALFLWGTDKLLEVVLYD 120

Query: 121 VILGWK 126
           +ILGWK
Sbjct: 121 LILGWK 126


>ref|YP_001101409.1| preprotein translocase membrane subunit [Herminiimonas
           arsenicoxydans]
 emb|CAL63288.1| Preprotein translocase subunit SecE [Herminiimonas arsenicoxydans]
          Length = 127

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/126 (69%), Positives = 107/126 (84%)

Query: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60
           MS+ PVQTV  S DK+KI LA++  +AGVVGF+ LSD++T VR  ALV GLL+A+A AWT
Sbjct: 1   MSNHPVQTVGASGDKVKIVLAVLVAIAGVVGFYFLSDKATIVRIAALVGGLLIAIAIAWT 60

Query: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120
           SA GR FV FAKE+VRETKKVVWPTRKE +Q+TA+VF FVL+MA+FL+GTDKLLE +LYD
Sbjct: 61  SASGRDFVNFAKEAVRETKKVVWPTRKETLQMTAIVFGFVLVMALFLFGTDKLLEVVLYD 120

Query: 121 VILGWK 126
           +ILGWK
Sbjct: 121 LILGWK 126


>ref|YP_004751048.1| preprotein translocase subunit SecE [Collimonas fungivorans Ter331]
 gb|AEK60225.1| Preprotein translocase subunit SecE [Collimonas fungivorans Ter331]
          Length = 127

 Score =  154 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 99/126 (78%), Positives = 111/126 (88%)

Query: 1   MSSQPVQTVNTSNDKIKIALAIVAVVAGVVGFFVLSDQSTPVRAVALVAGLLVAVAFAWT 60
           MS+ PVQTV  S  K+K+ LA++AVVAGVVGF+ LS QS  VRA ALVAGL+VA+AFAWT
Sbjct: 1   MSNHPVQTVGESGSKLKVILAVLAVVAGVVGFYFLSGQSGLVRAGALVAGLVVAIAFAWT 60

Query: 61  SAQGRGFVGFAKESVRETKKVVWPTRKEAMQITAVVFAFVLIMAIFLWGTDKLLEFLLYD 120
           S QGR F+GFAKE+VRETKKVVWPTRKEAMQITA+VFAFVL+MAIFLWG DKLLE LLYD
Sbjct: 61  STQGREFLGFAKEAVRETKKVVWPTRKEAMQITAIVFAFVLVMAIFLWGIDKLLEVLLYD 120

Query: 121 VILGWK 126
           VILGWK
Sbjct: 121 VILGWK 126