BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0087.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773531.1| muropeptide permease of the major facilitato... 675 0.0 ref|YP_004754796.1| AmpG-like permease [Collimonas fungivorans T... 594 e-167 ref|ZP_04577537.1| conserved hypothetical protein [Oxalobacter f... 516 e-144 ref|ZP_04579690.1| major facilitator transporter [Oxalobacter fo... 504 e-140 ref|ZP_02361186.1| transporter, major facilitator family protein... 495 e-138 >ref|YP_003773531.1| muropeptide permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ61623.1| muropeptide permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 382/388 (98%), Positives = 386/388 (99%) Query: 11 MTAPAASWQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 70 MTAPAASW QYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP Sbjct: 1 MTAPAASWHQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 60 Query: 71 YTWKFVWSPLMDRFHFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLTDVSTIAFMASVVA 130 YTWKFVWSPLMDRFHFG +GRRRGWMVFTQLLLFL+IGGMGMLDPLTDVSTIAFMASVVA Sbjct: 61 YTWKFVWSPLMDRFHFGGMGRRRGWMVFTQLLLFLSIGGMGMLDPLTDVSTIAFMASVVA 120 Query: 131 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 190 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI Sbjct: 121 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 180 Query: 191 TAAFMLPGLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 250 TAAFMLPGLLCSL+VKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL Sbjct: 181 TAAFMLPGLLCSLLVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 240 Query: 251 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 310 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV Sbjct: 241 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 300 Query: 311 LQAVPILGFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 370 LQAVPILGFAWLAHVGA+LPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF Sbjct: 301 LQAVPILGFAWLAHVGANLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 360 Query: 371 TSLMAVPRTFVNSSVGYIVADTGWLNFF 398 TSLMAVPRTFVNSSVGYIVADTGWLNFF Sbjct: 361 TSLMAVPRTFVNSSVGYIVADTGWLNFF 388 >ref|YP_004754796.1| AmpG-like permease [Collimonas fungivorans Ter331] gb|AEK63973.1| AmpG-like permease [Collimonas fungivorans Ter331] Length = 418 Score = 594 bits (1531), Expect = e-167, Method: Composition-based stats. Identities = 319/411 (77%), Positives = 367/411 (89%) Query: 11 MTAPAASWQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 70 MT+ + W YLNRRMLIC FLGF+SGLPLFILLSLLQAWL+KSGL+VK LGLFALVMFP Sbjct: 1 MTSDSNPWHHYLNRRMLICAFLGFSSGLPLFILLSLLQAWLSKSGLDVKALGLFALVMFP 60 Query: 71 YTWKFVWSPLMDRFHFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLTDVSTIAFMASVVA 130 YTWKF+WSPLMDRFHFG++GRRR WM+ TQ LF+AIGGMGML+P T V+TIAFMAS+VA Sbjct: 61 YTWKFLWSPLMDRFHFGKLGRRRSWMMLTQASLFVAIGGMGMLNPHTQVATIAFMASLVA 120 Query: 131 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 190 FLSASQDI IDAYRREILP+ E GLG+AI+VNAYK++GMVPGALSL LAD M W VFWI Sbjct: 121 FLSASQDIVIDAYRREILPDNEQGLGAAINVNAYKVAGMVPGALSLFLADHMSWQAVFWI 180 Query: 191 TAAFMLPGLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 250 TA FMLPGL+C+L++KEP VYG PPK+L +AVVLPF+EFIAR GW +ALWVL FIFLYKL Sbjct: 181 TAGFMLPGLVCTLMIKEPAVYGAPPKNLRQAVVLPFQEFIARDGWRSALWVLAFIFLYKL 240 Query: 251 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 310 GDSMATALAT+FYIDLGFS+T+IGV+SKTTSLWAS+ GG++GGIWM+++GINR LW+FGV Sbjct: 241 GDSMATALATRFYIDLGFSLTQIGVISKTTSLWASLVGGLVGGIWMMQIGINRALWIFGV 300 Query: 311 LQAVPILGFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 370 +QAV ILGFAWLA G VLA+VIG EAFGVGLGT AFVAYI R TDPRYTATQ+ALF Sbjct: 301 VQAVTILGFAWLAQTGPDPLVLAIVIGGEAFGVGLGTAAFVAYIARTTDPRYTATQYALF 360 Query: 371 TSLMAVPRTFVNSSVGYIVADTGWLNFFLICFVLALPGMLMLPRIAPWNEK 421 TSL AVPRTF+NSSVGYIVA+TGW +FF++CFVLALPGML+L ++APWNEK Sbjct: 361 TSLAAVPRTFINSSVGYIVAETGWFHFFILCFVLALPGMLILFKVAPWNEK 411 >ref|ZP_04577537.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO28499.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 412 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 279/409 (68%), Positives = 341/409 (83%) Query: 13 APAASWQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFPYT 72 A + W+ + R+LICVFLGF+SGLPLFILL+LLQAWL KSGLNV+ LGLFALVMFPYT Sbjct: 2 ALSKKWKAMFDPRLLICVFLGFSSGLPLFILLTLLQAWLTKSGLNVQALGLFALVMFPYT 61 Query: 73 WKFVWSPLMDRFHFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLTDVSTIAFMASVVAFL 132 WKF+W+PLMDR+ F +GRRRGWM TQ+ LF++IG +GMLDP + + + + +AFL Sbjct: 62 WKFLWAPLMDRYAFRWLGRRRGWMALTQVGLFVSIGLLGMLDPREQLVLVGLLTTFIAFL 121 Query: 133 SASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWITA 192 S+SQDI +DAYRRE+LP+ E GLGSAIHVNAY++SGMVPGALSL+LAD M W VFWITA Sbjct: 122 SSSQDIVVDAYRRELLPDEEQGLGSAIHVNAYRVSGMVPGALSLILADMMSWQAVFWITA 181 Query: 193 AFMLPGLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKLGD 252 AFMLPGL+C+LV++EP ++G PPK++ EAVVLPF EFI R GW +AL +L FIFLYKLGD Sbjct: 182 AFMLPGLVCTLVIREPVIHGAPPKTIREAVVLPFTEFIGRAGWKSALLILTFIFLYKLGD 241 Query: 253 SMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGVLQ 312 S+ATALATKFY+DLGF+MT+IGV++KTT WAS+ GG++GG+W++ LGINR LWVFG +Q Sbjct: 242 SLATALATKFYLDLGFTMTQIGVIAKTTGFWASLIGGLLGGVWIIGLGINRALWVFGAVQ 301 Query: 313 AVPILGFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALFTS 372 A+ ILGF+WL+ A +LA VIG EAFGVGLGT AFVAYI + TD RYTATQFALFTS Sbjct: 302 ALAILGFSWLSMGKADPVLLAFVIGFEAFGVGLGTAAFVAYIAKTTDERYTATQFALFTS 361 Query: 373 LMAVPRTFVNSSVGYIVADTGWLNFFLICFVLALPGMLMLPRIAPWNEK 421 L AVPRTF+N+S GYIV TGW FF +CF+LALPGML+LP+IAPW +K Sbjct: 362 LAAVPRTFINASAGYIVDMTGWFMFFNLCFILALPGMLLLPKIAPWRQK 410 >ref|ZP_04579690.1| major facilitator transporter [Oxalobacter formigenes OXCC13] gb|EEO30663.1| major facilitator transporter [Oxalobacter formigenes OXCC13] Length = 417 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 280/411 (68%), Positives = 348/411 (84%) Query: 18 WQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFPYTWKFVW 77 W+ L+ R+LICVFLGF+SGLPLFILL+LLQAWL KSGL++K+LGLFALVMFPYTWKF+W Sbjct: 7 WKAILDPRLLICVFLGFSSGLPLFILLTLLQAWLTKSGLSIKSLGLFALVMFPYTWKFLW 66 Query: 78 SPLMDRFHFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLTDVSTIAFMASVVAFLSASQD 137 +PLMDR+ F +GRRRGWM TQ+LLF IG +G LDP+T+++ +A + +V+AFLS+SQD Sbjct: 67 APLMDRYSFPLLGRRRGWMALTQILLFFCIGFLGWLDPVTELTMVAILTTVIAFLSSSQD 126 Query: 138 IAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWITAAFMLP 197 I +DA+RRE+LP+ E GLGSAIHVNAY++SGMVPGALSL+LAD M W VFW+TAAFMLP Sbjct: 127 IVVDAFRRELLPDEEQGLGSAIHVNAYRVSGMVPGALSLILADMMSWSGVFWVTAAFMLP 186 Query: 198 GLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKLGDSMATA 257 GL+C+LV+ EPK++G PPK++ EAVVLPF EFI R GW +AL++L FIFLYKLGDS+ATA Sbjct: 187 GLICTLVISEPKIHGAPPKTIREAVVLPFTEFIGRAGWKSALFILSFIFLYKLGDSLATA 246 Query: 258 LATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGVLQAVPIL 317 LATKFY+DLGF+MT+IGV++KTT WAS+ GG++GGIW++ LGINR LWVFG +QA+ IL Sbjct: 247 LATKFYLDLGFTMTQIGVIAKTTGFWASLIGGLLGGIWIIGLGINRALWVFGAVQALAIL 306 Query: 318 GFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALFTSLMAVP 377 GF+W++ G + +LA VIG EAFGV LGT AFVAYI TD RYTATQFALFTSL AVP Sbjct: 307 GFSWMSLEGPNPMLLAAVIGFEAFGVSLGTAAFVAYIATTTDERYTATQFALFTSLAAVP 366 Query: 378 RTFVNSSVGYIVADTGWLNFFLICFVLALPGMLMLPRIAPWNEKPVESQTQ 428 RTF+N+S GYIV TGW FF +CF+LALPGM++LP+IAPW +K +Q Q Sbjct: 367 RTFINASAGYIVDQTGWFMFFNLCFILALPGMMLLPKIAPWRQKRHLAQEQ 417 >ref|ZP_02361186.1| transporter, major facilitator family protein [Burkholderia oklahomensis C6786] Length = 437 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 258/433 (59%), Positives = 328/433 (75%), Gaps = 11/433 (2%) Query: 9 PPMTAPAAS-------WQQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTL 61 PP APA + W+ YLN MLICVFLGFTSGLPLF L+ L+QAWL G+N+K + Sbjct: 4 PPHDAPALNAHEDHPGWRAYLNTHMLICVFLGFTSGLPLFTLVYLVQAWLRSEGVNLKEI 63 Query: 62 GLFALVMFPYTWKFVWSPLMDRF----HFGRIGRRRGWMVFTQLLLFLAIGGMGMLDPLT 117 GLFAL+ FPYTWKF+W+PLMDRF R GRRRGWM+ TQLL+ AI +G + P Sbjct: 64 GLFALIQFPYTWKFLWAPLMDRFIPRLPGWRPGRRRGWMLVTQLLVACAIAALGFVSPRE 123 Query: 118 DVSTIAFMASVVAFLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLV 177 + T+A + ++VAF AS DI IDAYRRE+L + E GLG+A+HVNAYK++ ++PG+LSL+ Sbjct: 124 SIWTVAALTTLVAFFGASADIVIDAYRRELLRDTEQGLGNAVHVNAYKIAALIPGSLSLI 183 Query: 178 LADQMPWPTVFWITAAFMLPGLLCSLVVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGN 237 L+D +PW VF +TAAFMLPG++ +LVV+EP+V+G PP+SLTEAVVLPFREFI R GW Sbjct: 184 LSDHLPWDVVFALTAAFMLPGIVMTLVVREPEVHGVPPRSLTEAVVLPFREFIGRDGWRG 243 Query: 238 ALWVLGFIFLYKLGDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMV 297 AL VLGFIFLYKLGD+MAT L+T F++DLGF+ T+IGV++KTT+ WAS+AGGIIGG+W+V Sbjct: 244 ALLVLGFIFLYKLGDTMATTLSTSFFLDLGFNKTQIGVIAKTTAFWASLAGGIIGGVWLV 303 Query: 298 RLGINRGLWVFGVLQAVPILGFAWLAHVGASLPVLAVVIGLEAFGVGLGTTAFVAYIMRE 357 ++GI RGLW+FGVLQ V LGFAWLA G ++A + G E F GL AF AYI Sbjct: 304 KIGIARGLWIFGVLQIVSTLGFAWLAKAGPDAVLMAAIYGFETFSTGLTLAAFTAYIAST 363 Query: 358 TDPRYTATQFALFTSLMAVPRTFVNSSVGYIVADTGWLNFFLICFVLALPGMLMLPRIAP 417 TDPRYTATQFALFTSL +VPRT ++S G+IV+ GW ++FL+C L +PGMLML +IAP Sbjct: 364 TDPRYTATQFALFTSLASVPRTLASASSGFIVSQIGWFDYFLVCAALGIPGMLMLLKIAP 423 Query: 418 WNEKPVESQTQKA 430 WN ++ +A Sbjct: 424 WNGSTTGNEAARA 436