BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0078.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773522.1| nitrogen regulatory PII-like protein [Herbas...   189   1e-46
ref|ZP_08275437.1| Nitrogen regulatory protein P-II [Oxalobacter...   180   7e-44
ref|YP_001098507.1| nitrogen regulatory protein P-II 2 [Herminii...   179   1e-43
ref|YP_001351859.1| nitrogen regulatory protein PII [Janthinobac...   177   4e-43
ref|YP_004754806.1| nitrogen regulatory protein P-II [Collimonas...   177   4e-43

>ref|YP_003773522.1| nitrogen regulatory PII-like protein [Herbaspirillum seropedicae
           SmR1]
 gb|AAZ43075.1| GlnK [Herbaspirillum seropedicae SmR1]
 gb|ADJ61614.1| nitrogen regulatory PII-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 112

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL
Sbjct: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112


>ref|ZP_08275437.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31102.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 112

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 105/112 (93%), Positives = 109/112 (97%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIV+RA+EAIETAARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQHVVRIRTGETGKEAL 112


>ref|YP_001098507.1| nitrogen regulatory protein P-II 2 [Herminiimonas arsenicoxydans]
 emb|CAL60378.1| Nitrogen regulatory protein P-II 2 [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/112 (93%), Positives = 109/112 (97%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIV+RA+EAIETAARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>ref|YP_001351859.1| nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
 gb|ABR90055.1| Nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/112 (92%), Positives = 108/112 (96%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDAIV+R +EAIETAARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRVIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>ref|YP_004754806.1| nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
 gb|AEK63983.1| Nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
          Length = 112

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 103/112 (91%), Positives = 109/112 (97%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDD+I+E+A+EAIE AARTGKIGDGKIFV DL +VIRIRTGETGKDA+
Sbjct: 61  IEAAVDDSILEQAVEAIENAARTGKIGDGKIFVFDLQEVIRIRTGETGKDAI 112