BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0077.p (260 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773521.1| membrane protein [Herbaspirillum seropedicae... 422 e-116 ref|YP_004754807.1| hypothetical protein CFU_4162 [Collimonas fu... 309 3e-82 ref|YP_001353493.1| hypothetical protein mma_1803 [Janthinobacte... 260 2e-67 ref|YP_001099904.1| signal peptide [Herminiimonas arsenicoxydans... 238 7e-61 ref|ZP_08275436.1| hypothetical protein IMCC9480_368 [Oxalobacte... 230 2e-58 >ref|YP_003773521.1| membrane protein [Herbaspirillum seropedicae SmR1] gb|AAZ43074.1| probable membrane protein precursor [Herbaspirillum seropedicae SmR1] gb|ADJ61613.1| membrane protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 241/262 (91%), Positives = 250/262 (95%), Gaps = 2/262 (0%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNELSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILATAIAASFVSTVARAEDAKPDNE SFNAAVVSDYRYRGLTQTRFDPALQVGADY Sbjct: 1 MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGTLTG--TDTKGDVEWDIYGGKRGDIGGGFTYDVGGLY 118 THNPTGLYAGTWLTNIKWIKDAG + +TKGD+EWDIYGGKRGDIGGGFTYDVGGLY Sbjct: 61 THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120 Query: 119 YYYPGNTLANSGAKNANTFELYGQVGYGPAYFKYSQSLTNLFGAVNSKYSQYFDLGANIE 178 YYYPGNTLA+SGAKNANTFELYGQVGYGP YFKYSQSLTNLFGA NSKYSQYFDLGANIE Sbjct: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180 Query: 179 TYYGVMLGLHVGHQSVRGNPNDFSYTDWKIGLSKTFDEAAGITLGLAYVGTDLKDGVTTT 238 TYYGV+LGLHVGHQ+VRGNPN FSYTDWKIG+SKTFD+ AGITLGLAYVGTDLKDGVTTT Sbjct: 181 TYYGVILGLHVGHQNVRGNPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTTT 240 Query: 239 PASDGAKNVGKNGFVFSISKTF 260 PASDG KNVGKNGFVFS+SKTF Sbjct: 241 PASDGLKNVGKNGFVFSLSKTF 262 >ref|YP_004754807.1| hypothetical protein CFU_4162 [Collimonas fungivorans Ter331] gb|AEK63984.1| conserved hypothetical protein, signal peptide [Collimonas fungivorans Ter331] Length = 257 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 175/262 (66%), Positives = 211/262 (80%), Gaps = 7/262 (2%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNELSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILA IAASF + +A AEDAKPDNE+S+N V+DYR+RG++QTR DPA+Q GADY Sbjct: 1 MKKLILAATIAASFSAGLAHAEDAKPDNEISYNIGAVNDYRFRGISQTRLDPAIQGGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDA--GTLTGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLY 118 T+NPTGLYAGTWL+NIKWIKDA TGT KG +EWDIY GKRG++ GGFTYDVGGLY Sbjct: 61 TNNPTGLYAGTWLSNIKWIKDAVDTANTGTGGKGSIEWDIYAGKRGELPGGFTYDVGGLY 120 Query: 119 YYYPGNTLANSGAKNANTFELYGQVGYGPAYFKYSQSLTNLFGAVNSKYSQYFDLGANIE 178 YYYP N + G +NANTFELYGQ+GYGPAYFKYS +LTNLFG V+SK S Y+D GANI+ Sbjct: 121 YYYPTNNYSQIG-RNANTFELYGQLGYGPAYFKYSHALTNLFGTVDSKGSAYYDAGANID 179 Query: 179 TYYGVMLGLHVGHQSVRGNPNDFSYTDWKIGLSKTFDEAAGITLGLAYVGTDLKDGVTTT 238 GV LGLHVGHQ+V + + +SYTDWKIG +KTF++ AG+TLGLAYVGT+ KD + Sbjct: 180 VGAGVTLGLHVGHQTVE-HASFYSYTDWKIGATKTFEQLAGVTLGLAYVGTNAKDNAYVS 238 Query: 239 PASDGAKNVGKNGFVFSISKTF 260 P G KN+G++G VFS++KTF Sbjct: 239 P---GGKNLGRDGVVFSVAKTF 257 >ref|YP_001353493.1| hypothetical protein mma_1803 [Janthinobacterium sp. Marseille] gb|ABR91138.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 269 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 151/265 (56%), Positives = 185/265 (69%), Gaps = 20/265 (7%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNELSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MK+LIL AIAA+F +++A AED+KPDNE+SFNAAVVSDYRYRG++QTR PALQ GADY Sbjct: 20 MKQLILVVAIAAAFTASIAHAEDSKPDNEISFNAAVVSDYRYRGISQTRLQPALQGGADY 79 Query: 61 THNPTGLYAGTWLTNIKWIKDAGTLTGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLYYY 120 HNP+G YAGTWL+ IKW+KD G GDVE D+YGGKRG++G TYD+G L Y Sbjct: 80 VHNPSGFYAGTWLSTIKWVKDGG------GSGDVEVDVYGGKRGELGKNVTYDLGVLTYV 133 Query: 121 YPGNTLANSGAKNANTFELYGQVGYGPAYFKYSQSLTNLFGAVNSKYSQYFDLGANIETY 180 YP N L NANT E+YGQ+GYGPAY KYS S+TNLFG V+SK S Y D+GAN++ Sbjct: 134 YPSNGL----NPNANTTEVYGQLGYGPAYIKYSHSVTNLFGFVDSKNSGYLDIGANLDIS 189 Query: 181 YGVMLGLHVGHQSVRGN----PND-FSYTDWKIGLSKTFDEAAGITLGLAYVGTDLKDGV 235 G +L LH GHQ V G+ ND SYTDWK+G+SK F G LAY+GTD Sbjct: 190 NGYILNLHAGHQKVAGDNAGVSNDRLSYTDWKVGVSKDFGLFTG---ALAYIGTDADKSA 246 Query: 236 TTTPASDGAKNVGKNGFVFSISKTF 260 +P + K +GK+ + +ISKTF Sbjct: 247 YASPVN--GKFMGKDALILTISKTF 269 >ref|YP_001099904.1| signal peptide [Herminiimonas arsenicoxydans] emb|CAL61779.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 250 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 144/265 (54%), Positives = 176/265 (66%), Gaps = 20/265 (7%) Query: 1 MKKLILATAIAASFVSTVARAEDAKPDNELSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60 MKKLILA AI F +A AE+ KP+ E+SFNAAV SDYRYRG++QTR ALQ GADY Sbjct: 1 MKKLILAAAITTVFAGNLAHAEEQKPEQEVSFNAAVTSDYRYRGISQTRLQAALQGGADY 60 Query: 61 THNPTGLYAGTWLTNIKWIKDAGTLTGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLYYY 120 HNP+G YAGTWL+ +K++KDAG GDVE DIYGGKRG I +YDVG L Y Sbjct: 61 VHNPSGFYAGTWLSTLKFVKDAG------GNGDVEVDIYGGKRGAITSDVSYDVGALSYV 114 Query: 121 YPGNTLANSGAKNANTFELYGQVGYGPAYFKYSQSLTNLFGAVNSKYSQYFDLGANIETY 180 YP N L S NT E+YGQ+GYGPAY KYS S+TNLFG ++SK S Y D+GAN++ Sbjct: 115 YPSNGLNPS----TNTTEIYGQLGYGPAYIKYSHSVTNLFGYLDSKNSAYLDIGANLDLV 170 Query: 181 YGVMLGLHVGHQSVRG-----NPNDFSYTDWKIGLSKTFDEAAGITLGLAYVGTDLKDGV 235 G +L LH GHQ V G + + F+YTDWK+G++K F G LA VGTD Sbjct: 171 DGYILNLHAGHQKVSGTNGGVSNSRFNYTDWKVGVTKDFGIVTG---ALAVVGTDADKSA 227 Query: 236 TTTPASDGAKNVGKNGFVFSISKTF 260 +PA+ AK +GK G V ++SKTF Sbjct: 228 YASPAN--AKFMGKTGLVLTVSKTF 250 >ref|ZP_08275436.1| hypothetical protein IMCC9480_368 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31101.1| hypothetical protein IMCC9480_368 [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 139/242 (57%), Positives = 167/242 (69%), Gaps = 17/242 (7%) Query: 19 ARAEDAKPDNELSFNAAVVSDYRYRGLTQTRFDPALQVGADYTHNPTGLYAGTWLTNIKW 78 A AEDAKPDNELSFNAA+ SDYRYRG++Q+R PA+ GAD+ +NPTG Y GTW ++IKW Sbjct: 5 AHAEDAKPDNELSFNAALSSDYRYRGISQSRLKPAISAGADFVNNPTGFYVGTWASSIKW 64 Query: 79 IKDAGTLTGTDTKGDVEWDIYGGKRGDIGGGFTYDVGGLYYYYPGNTLANSGAKNANTFE 138 IKDAG KGD+E DIYGGKRG+I +YDVG L Y YP N L S ANT E Sbjct: 65 IKDAG------GKGDIELDIYGGKRGEIVKDVSYDVGVLTYVYPSNNLGTS----ANTTE 114 Query: 139 LYGQVGYGPAYFKYSQSLTNLFGAVNSKYSQYFDLGANIETYYGVMLGLHVGHQSVRGNP 198 +YGQVGYGP Y KYS S+TNLFG +SK S Y D+GANI+ G +L LHVGHQSV+ N Sbjct: 115 IYGQVGYGPGYVKYSHSVTNLFGFADSKNSGYLDIGANIDVAEGTVLNLHVGHQSVKNNS 174 Query: 199 NDFSYTDWKIGLSKTFDEAAGITLGLAYVGTDLKDGVTTTPASDGAKNVGKNGFVFSISK 258 SYTD+K+G++K F +G LA +GTD K G TP+ K+ GK V +ISK Sbjct: 175 YS-SYTDYKVGVTKDFGFLSG---SLAVIGTDAKTGAYPTPS---GKDNGKTALVVAISK 227 Query: 259 TF 260 TF Sbjct: 228 TF 229