BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0064.p (507 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum serope... 626 e-177 ref|YP_004751232.1| ribosomal RNA small subunit methyltransferas... 513 e-143 ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthi... 508 e-142 ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase... 503 e-140 emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiim... 497 e-138 >ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum seropedicae SmR1] Length = 424 Score = 626 bits (1615), Expect = e-177, Method: Composition-based stats. Identities = 354/407 (86%), Positives = 376/407 (92%) Query: 101 GQALPQVLAQIFARSDAPPPARGAIQDLSYRAMRSLGLSDSLLGLLANKPPQPEVLHGLL 160 G ALPQ LAQIF+RSDAP PARGAIQDLSYRAMRSLGL++SLLGLLANKPPQPEVLHGLL Sbjct: 18 GHALPQALAQIFSRSDAPAPARGAIQDLSYRAMRSLGLTESLLGLLANKPPQPEVLHGLL 77 Query: 161 VTALALLVNEEDAGYDSFTVVDQAVEAAAISQEMSFAKGVVNAILRRFLRERATLMPQAT 220 VTALALLVNEE++GYDSFTVVDQAV+AAAIS EMSFAKGVVNAILRR LRERATLMPQAT Sbjct: 78 VTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNAILRRLLRERATLMPQAT 137 Query: 221 KTPPGTWNYPTWWIDRLKGAYPEQWQAILHAGNQPPPLTLRVNRRKSNVPDSLNLLALNG 280 KTPPGTWNYPTWWIDRLK AYPEQWQAILHAGNQ PPLTLRVNRR++ V L+ L G Sbjct: 138 KTPPGTWNYPTWWIDRLKAAYPEQWQAILHAGNQAPPLTLRVNRRRTTVAQYLDTLQQAG 197 Query: 281 IGARQVGADAVRLDKPLPVSQIPGFADGLASVQDAAAQMAAPLLDVQDGMRVLDACAAPG 340 + ARQVG AVRL +P+PV Q+PGFA+G+ SVQDAAAQ+AAPLLDV DGMRVLDACAAPG Sbjct: 198 MAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAAAQLAAPLLDVADGMRVLDACAAPG 257 Query: 341 GKTGHLLELADIELQALDHDPRRLQRIAENLDRLQLKAQLITGDAREDGWWDGQGFDRIL 400 GKTGHLLELAD++LQALDHD RRLQRIAENLDRLQLKA+L TGDAR D WWDGQ FDRIL Sbjct: 258 GKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTTGDARADDWWDGQPFDRIL 317 Query: 401 ADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQILDKLWQMLRPDGKLLLVTCSLWPQ 460 ADVPCTASGIVRRHPDIRWLRRKTDTAQLATLS QILDKLWQMLRPDGKLLLVTCSLWPQ Sbjct: 318 ADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWPQ 377 Query: 461 ESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHDGLFYALFQKPGA 507 ESEQQA+AFAQK++AIRLPAPGQLLPTA ADHDGLFYALFQKPGA Sbjct: 378 ESEQQAVAFAQKHNAIRLPAPGQLLPTASETADHDGLFYALFQKPGA 424 >ref|YP_004751232.1| ribosomal RNA small subunit methyltransferase B [Collimonas fungivorans Ter331] gb|AEK60409.1| Ribosomal RNA small subunit methyltransferase B [Collimonas fungivorans Ter331] Length = 436 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 302/429 (70%), Positives = 352/429 (82%), Gaps = 4/429 (0%) Query: 80 KADSLAYQLAYAAQAVAAVRAGQALPQVLAQIFARSDAPPPARGAIQDLSYRAMRSLGLS 139 K DSLA+ L AAQA+A VR G ALPQ L Q+FA+S AP P RGAIQD++YR MR +G + Sbjct: 7 KKDSLAFSLLGAAQAIALVRDGAALPQALTQVFAQSAAPAPTRGAIQDIAYRTMRGIGRA 66 Query: 140 DSLLGLLANKPPQPEVLHGLLVTALALLVNEEDAGYDSFTVVDQAVEAAAISQEMSFAKG 199 ++LLG LA++PP+P +LH LL AL LL + +D Y++FTVV+QAV A + +M+ AKG Sbjct: 67 ETLLGNLASRPPEPTLLHCLLCAALCLLADVDDPAYENFTVVNQAVTAVSSDPQMAHAKG 126 Query: 200 VVNAILRRFLRERATLMPQATKTPPGTWNYPTWWIDRLKGAYPEQWQAILHAGNQPPPLT 259 +VNA+LRRFLRER TL+ A KTP G WNYP WWIDR+K AYP+QWQAIL AGN PPLT Sbjct: 127 MVNAVLRRFLRERETLVAAAIKTPFGLWNYPVWWIDRMKAAYPQQWQAILTAGNAAPPLT 186 Query: 260 LRVNRRKSNVPDSLNLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASVQDAAAQM 319 LRVNRRK++V L+ LA + I ARQ+G DA+RLD +PV+QIPGF DGLASVQDAAAQ+ Sbjct: 187 LRVNRRKTSVAAYLDTLASHAITARQIGPDAIRLDTAMPVAQIPGFEDGLASVQDAAAQL 246 Query: 320 AAPLLDVQDGMRVLDACAAPGGKTGHLLELADIELQALDHDPRRLQRIAENLDRLQLKAQ 379 AAPLLD+QDGMRVLDACAAPGGKTGH+LE AD+EL ALD++P+RL RI +NL RLQL+A+ Sbjct: 247 AAPLLDLQDGMRVLDACAAPGGKTGHILESADVELTALDNNPKRLLRITQNLQRLQLEAK 306 Query: 380 LITGDA----REDGWWDGQGFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQ 435 L GDA + WWDGQ FDRILADVPCTASGIVRRHPDIRWLRRKTDT QLATLSA+ Sbjct: 307 LQLGDAGTGSQGGDWWDGQLFDRILADVPCTASGIVRRHPDIRWLRRKTDTEQLATLSAK 366 Query: 436 ILDKLWQMLRPDGKLLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHD 495 ILD LWQMLRPDGKLLLVTCS+WPQESE QA AFA +N+A RLPAPGQLLPTA A DHD Sbjct: 367 ILDNLWQMLRPDGKLLLVTCSVWPQESEAQAAAFAARNNARRLPAPGQLLPTADAQHDHD 426 Query: 496 GLFYALFQK 504 GLFYALFQK Sbjct: 427 GLFYALFQK 435 >ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] Length = 437 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 289/429 (67%), Positives = 338/429 (78%), Gaps = 4/429 (0%) Query: 80 KADSLAYQLAYAAQAVAAVRAGQALPQVLAQIFARSDAPPPARGAIQDLSYRAMRSLGLS 139 K DSL++ L AAQAVAAV G ALPQ LAQIFA++ A P ARGAIQDLSY MR +G + Sbjct: 6 KPDSLSFSLHGAAQAVAAVGRGVALPQALAQIFAQTHATPQARGAIQDLSYHCMRHIGRA 65 Query: 140 DSLLGLLANKPPQPEVLHGLLVTALALLVN----EEDAGYDSFTVVDQAVEAAAISQEMS 195 ++LL + K +P +LHGLL ALAL+ + E +A Y +FTVVDQAV AAA +M+ Sbjct: 66 EALLNAMTTKQTEPAILHGLLCCALALISDPDEAESEARYSAFTVVDQAVTAAAADPDMA 125 Query: 196 FAKGVVNAILRRFLRERATLMPQATKTPPGTWNYPTWWIDRLKGAYPEQWQAILHAGNQP 255 AKG+VNA+LRRFLRER L+ A T WNYP WWIDR++ AYP+ WQAIL AGN Sbjct: 126 HAKGMVNAVLRRFLRERDALLKSAGGTQFARWNYPDWWIDRMRSAYPQNWQAILEAGNAA 185 Query: 256 PPLTLRVNRRKSNVPDSLNLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASVQDA 315 PPLTLRVNRRK+ V L LLA + A ++G DAV+L +P PV QIPGF +GL SVQDA Sbjct: 186 PPLTLRVNRRKTTVDAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDA 245 Query: 316 AAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLELADIELQALDHDPRRLQRIAENLDRLQ 375 AAQ+AA LLD++DGMRVLDACAAPGGK+GH+LE AD+EL ALD++ RR+ RIAENL+RLQ Sbjct: 246 AAQLAASLLDLRDGMRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLERLQ 305 Query: 376 LKAQLITGDAREDGWWDGQGFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQ 435 L+A L+TGDA WWDG+ FDRILADVPCTASGIVRRHPDIRWLRRK DT QLA +SA Sbjct: 306 LQATLLTGDASATDWWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAAISAT 365 Query: 436 ILDKLWQMLRPDGKLLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHD 495 ILD LWQML+PDGKLL VTCSLWPQESE QA AFA +N+A RLPAPGQLLPTA A++DHD Sbjct: 366 ILDNLWQMLQPDGKLLFVTCSLWPQESEAQAAAFAVRNNATRLPAPGQLLPTANAESDHD 425 Query: 496 GLFYALFQK 504 GLFYALFQK Sbjct: 426 GLFYALFQK 434 >ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] Length = 437 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 285/431 (66%), Positives = 335/431 (77%), Gaps = 3/431 (0%) Query: 80 KADSLAYQLAYAAQAVAAVRAGQALPQVLAQIFARSDAPPPARGAIQDLSYRAMRSLGLS 139 K DSLA+ L AA AVA VR G ALPQ L ++ +D ARGAIQD++YRAMR LG + Sbjct: 7 KPDSLAFSLRSAAHAVALVRGGTALPQALTRVQGYADTSGQARGAIQDIAYRAMRGLGRA 66 Query: 140 DSLLGLLANKPPQPEVLHGLLVTALALLVNEED---AGYDSFTVVDQAVEAAAISQEMSF 196 D+L+ LL ++ P+P LHGLL AL L+ +E A Y+ FTVV+QAVEAA+ M+ Sbjct: 67 DALVTLLTSRAPEPAALHGLLCCALTLIDRDESDLPAPYEIFTVVNQAVEAASADPAMAH 126 Query: 197 AKGVVNAILRRFLRERATLMPQATKTPPGTWNYPTWWIDRLKGAYPEQWQAILHAGNQPP 256 AKG+VNA+LRRFLRERATL+ + + P WNYP WWID ++ AYP+QWQAILHAGN P Sbjct: 127 AKGMVNAVLRRFLRERATLLAEVLRQPVAEWNYPGWWIDTMRNAYPQQWQAILHAGNAAP 186 Query: 257 PLTLRVNRRKSNVPDSLNLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASVQDAA 316 PL LRVN+R++ L LLA I ARQVG DA+RL++P+PV QIPGF +GL SVQDAA Sbjct: 187 PLILRVNQRRTTPDAYLALLADQQILARQVGPDAIRLERPVPVLQIPGFMEGLVSVQDAA 246 Query: 317 AQMAAPLLDVQDGMRVLDACAAPGGKTGHLLELADIELQALDHDPRRLQRIAENLDRLQL 376 AQ+AAPLLD +DGMRVLDACAAPGGKTGHLLE A ++L ALD DPRRL+RI ENL RLQL Sbjct: 247 AQLAAPLLDARDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQRLQL 306 Query: 377 KAQLITGDAREDGWWDGQGFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQI 436 A+L+ GDA WWDG+ FDRILADVPCTASGI+RRHPDIRWLRRK DTAQLA LS++I Sbjct: 307 TARLVAGDAAATDWWDGKPFDRILADVPCTASGILRRHPDIRWLRRKADTAQLAALSSRI 366 Query: 437 LDKLWQMLRPDGKLLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHDG 496 LD LW+ML PDGKLL VTCSLWPQESE QA AFA +N A RLPAPGQLLP A ++ DHDG Sbjct: 367 LDNLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQAERLPAPGQLLPMATSNEDHDG 426 Query: 497 LFYALFQKPGA 507 LFYALF+KP Sbjct: 427 LFYALFRKPAG 437 >emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas arsenicoxydans] Length = 453 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 291/431 (67%), Positives = 335/431 (77%), Gaps = 4/431 (0%) Query: 80 KADSLAYQLAYAAQAVAAVRAGQALPQVLAQIFARSDAPPPARGAIQDLSYRAMRSLGLS 139 K DSL++ L AAQAVA V G ALPQ LA+IFA+++A P ARGAIQD+SY MR +G + Sbjct: 22 KPDSLSFTLHGAAQAVADVGRGIALPQSLARIFAQTNATPQARGAIQDISYHCMRHIGRA 81 Query: 140 DSLLGLLANKPPQPEVLHGLLVTALALLVNEEDA----GYDSFTVVDQAVEAAAISQEMS 195 ++LL + K +P +LHGLL ALAL+ + E+A Y +FTVVDQAV AAA +M+ Sbjct: 82 EALLNAMTTKQTEPPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAAADTDMA 141 Query: 196 FAKGVVNAILRRFLRERATLMPQATKTPPGTWNYPTWWIDRLKGAYPEQWQAILHAGNQP 255 AKG+VNAILRRFLRER LM A T WNYP WWIDR++ AYP WQAIL AGN Sbjct: 142 HAKGMVNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDWQAILEAGNAA 201 Query: 256 PPLTLRVNRRKSNVPDSLNLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASVQDA 315 PPLTLRVN+RK +V D L LLA GI A +G AVRL +P PV+QIPGF+DGL SVQDA Sbjct: 202 PPLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDA 261 Query: 316 AAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLELADIELQALDHDPRRLQRIAENLDRLQ 375 AAQ+AAPLLD++DGMRVLDACAAPGGK+GH+LE A +EL ALD D RRL RI ENL RLQ Sbjct: 262 AAQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQ 321 Query: 376 LKAQLITGDAREDGWWDGQGFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSAQ 435 L A L+ GDA + WWDG+ F+RILADVPCTASGIVRRHPDIRWLRRK+D QLA +SAQ Sbjct: 322 LNASLLVGDATGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQ 381 Query: 436 ILDKLWQMLRPDGKLLLVTCSLWPQESEQQAIAFAQKNHAIRLPAPGQLLPTAGADADHD 495 ILD LWQML+ DGKLL VTCSLWPQESE QA AFA +N AIRLPAPGQLLPTA A+ DHD Sbjct: 382 ILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNRAIRLPAPGQLLPTANAEDDHD 441 Query: 496 GLFYALFQKPG 506 GLFYALFQK G Sbjct: 442 GLFYALFQKSG 452