BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0061.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773507.1| two component response regulator protein [He... 445 e-123 ref|YP_004751229.1| putative two-component response regulator co... 328 3e-88 ref|YP_001098494.1| putative two-component response regulator co... 321 6e-86 ref|YP_001351845.1| two-components system response regulator [Ja... 320 9e-86 ref|YP_003905373.1| Fis family two component transcriptional reg... 291 7e-77 >ref|YP_003773507.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61599.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 240/249 (96%), Positives = 243/249 (97%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 Query: 121 SREAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMGSEPLHHGTPAATPFGQV 180 SREAVRPA YRPAPVAAV NGA+D LHTPEH APVAAYAPA+G EPLHHGT A+TPFGQV Sbjct: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE Sbjct: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 Query: 241 PGKLARKNH 249 PGKLARKNH Sbjct: 241 PGKLARKNH 249 >ref|YP_004751229.1| putative two-component response regulator containing CheY-like receiver [Collimonas fungivorans Ter331] gb|AEK60406.1| putative two-component response regulator containing CheY-like receiver [Collimonas fungivorans Ter331] Length = 240 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 179/247 (72%), Positives = 195/247 (78%), Gaps = 9/247 (3%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVT AENAQQARE R GVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTAAENAQQAREFRHGGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLS Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSQ 120 Query: 121 SREAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMGSEPLHHGTPAATPFGQV 180 + R + P P AA S + + V + SE H T + Sbjct: 121 GPKTARAPTLYPQPAAA-------SGESNDTVVTAGVFNNPASSEAAHITTMPSVAVA-- 171 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 +++ + SF LPLREARDAFERAYFEYHL+RE+GSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 172 SESLFSSSFGLPLREARDAFERAYFEYHLIRESGSMTRVAEKTGLERTHLYRKLKQLGVD 231 Query: 241 PGKLARK 247 PGKL++K Sbjct: 232 PGKLSKK 238 >ref|YP_001098494.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] emb|CAL60365.1| putative two-component response regulator containing CheY-like receiver [Herminiimonas arsenicoxydans] Length = 236 Score = 321 bits (823), Expect = 6e-86, Method: Composition-based stats. Identities = 179/249 (71%), Positives = 197/249 (79%), Gaps = 16/249 (6%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQG+S Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGISR 120 Query: 121 SREAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMGSEPLHHGTPAATPFGQV 180 +E R AS PV A +H H++ ++ P G P +TP + Sbjct: 121 GQEVSRVAS---IPVRAPI------IHNDTHLSSDRSHQPLAGIS-----YPTSTPVSLM 166 Query: 181 ADNAA--NISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLG 238 + + SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLG Sbjct: 167 SADTQFFTTSFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQLG 226 Query: 239 VEPGKLARK 247 VEPGK+A+K Sbjct: 227 VEPGKIAKK 235 >ref|YP_001351845.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR91059.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 238 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 186/251 (74%), Positives = 202/251 (80%), Gaps = 19/251 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG+LTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQGL+ Sbjct: 61 VTLLKEWQRDGMLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGLTR 120 Query: 121 SREAVRPASYR-PAPVAAVANGASDSLHTPE-HVAPVAAYA--PAMGSEPLHHGTPAATP 176 +E R AS AP+A A+DS H P+ V P ++ PA+ S PL A T Sbjct: 121 GQEVTRIASMPVRAPIA-----ATDSHHLPQDKVLPASSSQMYPAIASAPL---MSADTQ 172 Query: 177 FGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQ 236 F SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQ Sbjct: 173 F-------FTASFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQ 225 Query: 237 LGVEPGKLARK 247 LGVEPGK+A+K Sbjct: 226 LGVEPGKIAKK 236 >ref|YP_003905373.1| Fis family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN56082.1| two component transcriptional regulator, Fis family [Burkholderia sp. CCGE1003] Length = 229 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 167/243 (68%), Positives = 182/243 (74%), Gaps = 18/243 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQQARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQQAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 SREAVRPASYRPAPVAAVANGASDSLHTPEHVAPVAAYAPAMGSEPLHHGTPAATPFGQV 180 AV+P A +L AA P + ++ HG+ G + Sbjct: 121 GTAAVQPG----------GAAAKSALPMNSSAVASAAALPMLSAD--GHGS------GVL 162 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 A A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 163 AAQTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVD 222 Query: 241 PGK 243 GK Sbjct: 223 LGK 225