BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0058.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773504.1| drug/metabolite transporter (DMT) superfamil... 404 e-110 ref|YP_001352094.1| transporter of the DMT superfamily [Janthino... 316 3e-84 ref|YP_004752116.1| hypothetical protein CFU_1461 [Collimonas fu... 305 6e-81 ref|YP_002981902.1| hypothetical protein Rpic12D_1949 [Ralstonia... 275 1e-71 ref|YP_001899838.1| hypothetical protein Rpic_2272 [Ralstonia pi... 263 3e-68 >ref|YP_003773504.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ61596.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 230/266 (86%), Positives = 247/266 (92%) Query: 82 HASWNALLKSSHDRLASLSLMTLGAGLGAIPLVLWRPWPQAESWFYILLSGLLHTGYNLF 141 HASWNALLKSSHDRLASL+LMTLGAG+GAIPL+LWRPWP+ SWFYI+LSGLLHTGYNLF Sbjct: 16 HASWNALLKSSHDRLASLALMTLGAGIGAIPLILWRPWPEPASWFYIILSGLLHTGYNLF 75 Query: 142 LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGIYTVIGIALVSLGIVSLANLRA 201 LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLG+YTVIGI LVSLGIVSLA+LRA Sbjct: 76 LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGLYTVIGILLVSLGIVSLADLRA 135 Query: 202 MRRREHLSGPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWLFVADSIPLALLYQYKH 261 MR REHL+GPLAA ATGAFIAAYTITDGIGARLAGDA++YAGWLFV DSI LA++YQ +H Sbjct: 136 MRSREHLAGPLAAFATGAFIAAYTITDGIGARLAGDAMSYAGWLFVLDSIALAVIYQRRH 195 Query: 262 GRSPVVLSHKDTWIGLAGGVMSLLAYGIVIWAVTLAPMGMVSALRETSVLFALLIGTLFL 321 GR P+ L ++TW GL GGVMSLLAYGIVIWAVTLAPMGMVSALRETSVLFALLIG LFL Sbjct: 196 GRWPIALGRRETWTGLGGGVMSLLAYGIVIWAVTLAPMGMVSALRETSVLFALLIGALFL 255 Query: 322 GEKLTLRRVLSCAVIAAGAIVLGTHH 347 GE+LTLRRVLS VI AG IVLGTHH Sbjct: 256 GERLTLRRVLSGVVIVAGTIVLGTHH 281 >ref|YP_001352094.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] gb|ABR90615.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] Length = 298 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 189/281 (67%), Positives = 230/281 (81%), Gaps = 3/281 (1%) Query: 66 RMTLSVIALVLAAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLVLWRPWPQAESW 125 RM++ V++LVL AALLHASWNALLKSS D L +L++MT+G+GL A+PL+L+ P P ESW Sbjct: 20 RMSIFVLSLVLFAALLHASWNALLKSSADPLGALAVMTIGSGLAALPLILYLPLPLPESW 79 Query: 126 FYILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGIYTVIG 185 YI LS +LHT YNLFLIRAYRIGDF QSYPIARGSSPLLV LGAA+ GEQ+ T++G Sbjct: 80 PYIALSAVLHTAYNLFLIRAYRIGDFSQSYPIARGSSPLLVTLGAALLVGEQMSWMTLLG 139 Query: 186 IALVSLGIVSLANLRAMRRREHLSGPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWL 245 + L+S+GI+SLA+++ R HL+GP+AA TGAFIAAYTITDG+GAR+AG A++Y GWL Sbjct: 140 VILISVGIISLAHIK---NRLHLAGPIAAFTTGAFIAAYTITDGLGARVAGSALSYCGWL 196 Query: 246 FVADSIPLALLYQYKHGRSPVVLSHKDTWIGLAGGVMSLLAYGIVIWAVTLAPMGMVSAL 305 FV DS+PL L+Y H R P+ K+TW+ L GG+MSLLAYGIVIWAVTLAPMG VSAL Sbjct: 197 FVLDSVPLLLIYLRLHKRLPMAFGSKETWVALGGGLMSLLAYGIVIWAVTLAPMGTVSAL 256 Query: 306 RETSVLFALLIGTLFLGEKLTLRRVLSCAVIAAGAIVLGTH 346 RETSVLFA LIG LFLGEKL++RR+LSC +I GAI+LG H Sbjct: 257 RETSVLFAALIGWLFLGEKLSMRRILSCLLITVGAIILGLH 297 >ref|YP_004752116.1| hypothetical protein CFU_1461 [Collimonas fungivorans Ter331] gb|AEK61293.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 286 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 184/284 (64%), Positives = 222/284 (78%), Gaps = 7/284 (2%) Query: 67 MTLSVIALVLAAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLVLWRPWPQAESWF 126 MT VIALVL AALLHASWNA+LKSS DRL +++LMT+G+ + +IP+VLW P P SW Sbjct: 1 MTAGVIALVLCAALLHASWNAMLKSSGDRLWAITLMTIGSAVASIPIVLWAPLPALASWP 60 Query: 127 YILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGIYTVIGI 186 YIL+S +LH GYNLFL+RAYR GDFGQSYPIARGSSPLLV+LGAA+FAGEQLGI T+ G+ Sbjct: 61 YILMSVVLHAGYNLFLVRAYRAGDFGQSYPIARGSSPLLVSLGAALFAGEQLGILTLAGV 120 Query: 187 ALVSLGIVSLANLRAMRRREHLSG------PLAALATGAFIAAYTITDGIGARLAGDAIA 240 L+S GI+SLA ++ RR ++G PL+A TG FIA YTI DG+G+RLAG A + Sbjct: 121 VLISAGIISLAQIK-FRRGSSVAGSRQWDAPLSAFTTGVFIAGYTIVDGLGSRLAGSAAS 179 Query: 241 YAGWLFVADSIPLALLYQYKHGRSPVVLSHKDTWIGLAGGVMSLLAYGIVIWAVTLAPMG 300 YAGW+F+ D +PL ++Y HG + L + TW L GG MSLLAYGIVIWA+TLAPMG Sbjct: 180 YAGWMFLLDGLPLLMIYLSMHGSLRIALRERATWNALGGGAMSLLAYGIVIWAITLAPMG 239 Query: 301 MVSALRETSVLFALLIGTLFLGEKLTLRRVLSCAVIAAGAIVLG 344 VSALRETSVLFA LI +FLGE LTLRR+LSCAVIA GA++LG Sbjct: 240 PVSALRETSVLFAALIARMFLGEALTLRRLLSCAVIALGAVMLG 283 >ref|YP_002981902.1| hypothetical protein Rpic12D_1949 [Ralstonia pickettii 12D] gb|ACS63230.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12D] Length = 277 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 167/278 (60%), Positives = 204/278 (73%), Gaps = 4/278 (1%) Query: 67 MTLSVIALVLAAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLVLWRPWPQAESWF 126 MT +VIALVL AALLHASWNALLKS DRL +++LMTL +G+ A+P+ + P P +W Sbjct: 1 MTPAVIALVLCAALLHASWNALLKSGADRLRAITLMTLASGVAALPMAIALPLPAPAAWP 60 Query: 127 YILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGIYTVIGI 186 Y+ LS +LH GYN+FL RAYR G+FGQ YPIARGSSPLLV +GAA+FAGE G+ + G+ Sbjct: 61 YVALSAVLHVGYNVFLARAYRFGEFGQVYPIARGSSPLLVTVGAALFAGEMPGVIALTGV 120 Query: 187 ALVSLGIVSLANLRAMRRREHLSGPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWLF 246 LVS GI+SLA R+ L LAAL TG FIA YT+ DGIGAR+AG+A AY+ WLF Sbjct: 121 VLVSGGILSLAR----GRKADLGSTLAALTTGVFIACYTVCDGIGARVAGNANAYSAWLF 176 Query: 247 VADSIPLALLYQYKHGRSPVVLSHKDTWIGLAGGVMSLLAYGIVIWAVTLAPMGMVSALR 306 + D +P+ LLY+ G + L +T GGV+SL+AYGIVIWAVTLAPMG VSALR Sbjct: 177 MLDGLPMVLLYRVWKGPLNIGLRDVNTLKTFGGGVVSLVAYGIVIWAVTLAPMGPVSALR 236 Query: 307 ETSVLFALLIGTLFLGEKLTLRRVLSCAVIAAGAIVLG 344 ETSV+FA L+G LFL E LT RRV +C+VIA GA LG Sbjct: 237 ETSVVFAALLGRLFLKESLTARRVSACSVIAFGAYCLG 274 >ref|YP_001899838.1| hypothetical protein Rpic_2272 [Ralstonia pickettii 12J] ref|ZP_07676528.1| integral membrane protein DUF6 [Ralstonia sp. 5_7_47FAA] gb|ACD27406.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12J] gb|EFP65100.1| integral membrane protein DUF6 [Ralstonia sp. 5_7_47FAA] Length = 277 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 166/278 (59%), Positives = 204/278 (73%), Gaps = 4/278 (1%) Query: 67 MTLSVIALVLAAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLVLWRPWPQAESWF 126 MT +VIALVL AALLHASWNALLKS DRL +++LMTL +G+ A+P+ + P P +W Sbjct: 1 MTPAVIALVLCAALLHASWNALLKSGSDRLRAITLMTLASGVAALPMAIALPLPAPAAWP 60 Query: 127 YILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGIYTVIGI 186 Y+ LS +LH GYN+FL RAYR G+FGQ YPIARGSSPLLV +GA++FAGE G+ T+ G+ Sbjct: 61 YVALSAVLHVGYNVFLARAYRFGEFGQVYPIARGSSPLLVTVGASLFAGEMPGVITLAGV 120 Query: 187 ALVSLGIVSLANLRAMRRREHLSGPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWLF 246 LVS GI+SLA R+ L LAAL TG FIA YT+ DGIGAR AG+A AY+ WLF Sbjct: 121 VLVSGGILSLAR----GRKADLGSTLAALTTGVFIACYTVCDGIGARAAGNANAYSAWLF 176 Query: 247 VADSIPLALLYQYKHGRSPVVLSHKDTWIGLAGGVMSLLAYGIVIWAVTLAPMGMVSALR 306 + D +P+ LLY+ G + L +T GGV+SL+AYGIVIWAVTLAPMG VSALR Sbjct: 177 MLDGLPMVLLYRVWKGPLNIDLRDANTLKTFGGGVVSLIAYGIVIWAVTLAPMGPVSALR 236 Query: 307 ETSVLFALLIGTLFLGEKLTLRRVLSCAVIAAGAIVLG 344 ETSV+FA L+G LFL E LT RR+ +C+VIA GA LG Sbjct: 237 ETSVVFAALLGRLFLKESLTARRLSACSVIAFGAYCLG 274