BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0056.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspi... 466 e-129 ref|ZP_03827725.1| amino acid ABC transporter [Pectobacterium ca... 373 e-101 ref|ZP_03831783.1| amino acid ABC transporter [Pectobacterium ca... 371 e-101 ref|YP_051626.1| amino acid ABC transporter [Pectobacterium atro... 371 e-101 ref|YP_003260856.1| polar amino acid ABC transporter inner membr... 370 e-101 >ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61594.1| ABC-type glutamine transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 245/250 (98%), Positives = 248/250 (99%) Query: 1 MHSFFQWEIIGEYAPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLC 60 M+SFFQWEIIGEY PLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLC Sbjct: 1 MNSFFQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLC 60 Query: 61 YCVQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS 120 YCVQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS Sbjct: 61 YCVQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS 120 Query: 121 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLGTLRRVVLPQAFRRMLPPLG 180 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYL TLRRVVLPQAFRRMLPPLG Sbjct: 121 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLG 180 Query: 181 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALAALVRHL 240 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYW+ITLAL+ALVRHL Sbjct: 181 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHL 240 Query: 241 EARYGKGDAR 250 EARYGKGDAR Sbjct: 241 EARYGKGDAR 250 >ref|ZP_03827725.1| amino acid ABC transporter [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 254 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 188/251 (74%), Positives = 215/251 (85%), Gaps = 5/251 (1%) Query: 5 FQWEIIGEYAPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 F+WEII EYAPLF+EGTWMT+K IICVI GTCWGL LG+GRLA+A HG WKY L Y VQ Sbjct: 4 FRWEIIQEYAPLFMEGTWMTIKCTIICVILGTCWGLTLGLGRLAQAPHGPWKYILHYGVQ 63 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGL-----ILSGDLAREIRSHYGAFA 119 WP+R Y+S RGTPLFVQI+++HFAL+P+ INP GL I+S D AR +RS YGAF Sbjct: 64 WPVRIYISAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSNIMSVDFARTLRSDYGAFL 123 Query: 120 SAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLGTLRRVVLPQAFRRMLPPL 179 S ++AITLN+GAYVSEIFRAGIQSIDRGQ EASRSLGMSY T+R+V+LPQAFRRMLPPL Sbjct: 124 SCIVAITLNAGAYVSEIFRAGIQSIDRGQMEASRSLGMSYGRTMRKVILPQAFRRMLPPL 183 Query: 180 GNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALAALVRH 239 GNNAIAIVKDSSLASAIGLA+LAYAARTVSGAYA YWEPYLTIS++YWVIT L+ LVRH Sbjct: 184 GNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISIVYWVITFLLSLLVRH 243 Query: 240 LEARYGKGDAR 250 +E R+GK D+R Sbjct: 244 METRFGKSDSR 254 >ref|ZP_03831783.1| amino acid ABC transporter [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 254 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 188/251 (74%), Positives = 214/251 (85%), Gaps = 5/251 (1%) Query: 5 FQWEIIGEYAPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 F+WEII EYAPLF+EGTWMT+K IICVI GTCWGL LG+GRLA+A HG WKY L Y VQ Sbjct: 4 FRWEIIQEYAPLFMEGTWMTIKCTIICVILGTCWGLTLGLGRLAQAPHGPWKYILHYGVQ 63 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGL-----ILSGDLAREIRSHYGAFA 119 WP+R Y+S RGTPLFVQI+++HFAL+P+ INP GL I+S D AR +RS YGAF Sbjct: 64 WPVRIYISAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSNIMSVDFARTLRSDYGAFL 123 Query: 120 SAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLGTLRRVVLPQAFRRMLPPL 179 S V+AITLN+GAYVSEIFRAGIQSID GQ EASRSLGMSY T+R+V+LPQAFRRMLPPL Sbjct: 124 SCVVAITLNAGAYVSEIFRAGIQSIDHGQMEASRSLGMSYGRTMRKVILPQAFRRMLPPL 183 Query: 180 GNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALAALVRH 239 GNNAIAIVKDSSLASAIGLA+LAYAARTVSGAYA YWEPYLTIS++YWVIT L+ LVRH Sbjct: 184 GNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISIVYWVITFLLSLLVRH 243 Query: 240 LEARYGKGDAR 250 +E R+GK D+R Sbjct: 244 MEMRFGKSDSR 254 >ref|YP_051626.1| amino acid ABC transporter [Pectobacterium atrosepticum SCRI1043] emb|CAG76436.1| amino acid ABC transporter [Pectobacterium atrosepticum SCRI1043] Length = 254 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 188/251 (74%), Positives = 215/251 (85%), Gaps = 5/251 (1%) Query: 5 FQWEIIGEYAPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 F+WEII EYAPLF+EGTWMT+K IICVI GTCWGL LG+GRLA+A HG WKY L Y +Q Sbjct: 4 FRWEIIQEYAPLFMEGTWMTIKCTIICVILGTCWGLTLGLGRLAQAPHGPWKYILHYGIQ 63 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGL-----ILSGDLAREIRSHYGAFA 119 WP+R Y+S RGTPLFVQI+++HFAL+P+LINP GL I+S D AR +RS YGAF Sbjct: 64 WPVRIYISAFRGTPLFVQIMVVHFALVPLLINPRDGLLVTSNIMSVDFARTLRSDYGAFL 123 Query: 120 SAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLGTLRRVVLPQAFRRMLPPL 179 S V+AITLN+GAYVSEIFRAGIQSIDRGQ EASRSLGMSY T+R+V+LPQAFRRMLPPL Sbjct: 124 SCVVAITLNAGAYVSEIFRAGIQSIDRGQMEASRSLGMSYGRTMRKVILPQAFRRMLPPL 183 Query: 180 GNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALAALVRH 239 GNNAIAIVKDSSLASAIGLA+LAYAARTVSGAYA YWEPYL IS++YWVIT L+ LVRH Sbjct: 184 GNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLAISIVYWVITFLLSLLVRH 243 Query: 240 LEARYGKGDAR 250 +E R+GK D+R Sbjct: 244 MEMRFGKSDSR 254 >ref|YP_003260856.1| polar amino acid ABC transporter inner membrane protein [Pectobacterium wasabiae WPP163] gb|ACX89249.1| polar amino acid ABC transporter, inner membrane subunit [Pectobacterium wasabiae WPP163] Length = 254 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 188/251 (74%), Positives = 214/251 (85%), Gaps = 5/251 (1%) Query: 5 FQWEIIGEYAPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 F+WEII EYAPLF+EGTWMT+K IICVI GTCWGL LG+GRLA+A HG WKY L Y VQ Sbjct: 4 FRWEIIQEYAPLFMEGTWMTIKCTIICVILGTCWGLTLGLGRLAQAPHGPWKYILHYGVQ 63 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGL-----ILSGDLAREIRSHYGAFA 119 WP+R Y+S RGTPLFVQI+++HFAL+P+ INP GL I+S D AR +RS YGAF Sbjct: 64 WPVRIYISAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSNIMSVDFARTLRSDYGAFL 123 Query: 120 SAVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLGTLRRVVLPQAFRRMLPPL 179 S V+AITLN+GAYVSEIFRAGIQSIDRGQ EASRSLGMSY T+R+V+LPQAFRRMLPPL Sbjct: 124 SCVVAITLNAGAYVSEIFRAGIQSIDRGQMEASRSLGMSYGRTMRKVILPQAFRRMLPPL 183 Query: 180 GNNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALAALVRH 239 GNNAIAIVKDSSLASAIGLA+LAYAARTVSGAYA YWEPYL IS++YWVIT L+ LVRH Sbjct: 184 GNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLAISIVYWVITFLLSLLVRH 243 Query: 240 LEARYGKGDAR 250 +E R+GK D+R Sbjct: 244 MEMRFGKSDSR 254