BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0055.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773501.1| glutamine ABC transporter periplasmic protei... 446 e-123 ref|YP_003366320.1| periplasmic solute-binding protein of ABC tr... 347 1e-93 ref|ZP_04630612.1| Amino acid-binding protein [Yersinia frederik... 346 2e-93 gb|AEJ98582.1| amino acid-binding protein [Klebsiella pneumoniae... 345 4e-93 ref|ZP_04634895.1| Amino acid-binding protein [Yersinia intermed... 342 2e-92 >ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61593.1| ABC-type glutamine transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 243/259 (93%), Positives = 250/259 (96%) Query: 1 MSLKKLVLLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKA 60 MSLKKL+ A S LALS A +A AADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKA Sbjct: 1 MSLKKLLTTAASALALSCAAGTALAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKA 60 Query: 61 ISQASNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIIT 120 ISQASNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIIT Sbjct: 61 ISQASNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIIT 120 Query: 121 NADAKIASLADLKKTQVAVVNSTAGDIVVSEELGKSSTAIHRFDNTVLMLEELYRGGVDA 180 NADAKI SL+DLKKTQVAVVNSTAGDIVVSEELGK+STAIHRFDNTVLMLEELYRGGVDA Sbjct: 121 NADAKITSLSDLKKTQVAVVNSTAGDIVVSEELGKASTAIHRFDNTVLMLEELYRGGVDA 180 Query: 181 AVGDVGVIKFYIKSHPEKKFKVVGDTKFVRQYFGIAVKKGNKELLDKINAGLKQIVADGT 240 AVGDVGVIKFYIKSHPEKKFKVVGD+KFVRQYFGIAVKKGNKELLDKINAGLK+IVADGT Sbjct: 181 AVGDVGVIKFYIKSHPEKKFKVVGDSKFVRQYFGIAVKKGNKELLDKINAGLKKIVADGT 240 Query: 241 YAKIYKTWFDGEVPTLPLK 259 YAKIYKTWFDG+VPTLPLK Sbjct: 241 YAKIYKTWFDGDVPTLPLK 259 >ref|YP_003366320.1| periplasmic solute-binding protein of ABC transporter [Citrobacter rodentium ICC168] emb|CBG89534.1| putative periplasmic solute-binding protein of ABC transporter [Citrobacter rodentium ICC168] Length = 255 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 176/249 (70%), Positives = 205/249 (82%), Gaps = 1/249 (0%) Query: 9 LAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKAISQASNFK 68 + L ++LT +A AA +TYVVGAGGTYRPFEFE +K+L GFDID+IKAI++A NF+ Sbjct: 6 MKAGCLMMALTG-AAMAAQETYVVGAGGTYRPFEFENSQKQLEGFDIDIIKAIAKAENFE 64 Query: 69 IQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIITNADAKIAS 128 ++LV+TPWEGIFATLG GDRDIIISGITITDKR QMVDFS PYFPAEQ I+ A + + S Sbjct: 65 VKLVNTPWEGIFATLGSGDRDIIISGITITDKRKQMVDFSHPYFPAEQSIVVPAGSTVTS 124 Query: 129 LADLKKTQVAVVNSTAGDIVVSEELGKSSTAIHRFDNTVLMLEELYRGGVDAAVGDVGVI 188 L LK +V VVNS+ GDIVVS LGK+STAI RFDNT LML+EL+ GV AAVGDVGV+ Sbjct: 125 LDSLKNEKVGVVNSSTGDIVVSGVLGKNSTAIKRFDNTPLMLQELFEDGVSAAVGDVGVV 184 Query: 189 KFYIKSHPEKKFKVVGDTKFVRQYFGIAVKKGNKELLDKINAGLKQIVADGTYAKIYKTW 248 K+YI+ HPEK+FK+V D KF RQYFGIAV KGN ELL KINAGLK+I+ADGTY KIYKTW Sbjct: 185 KYYIRQHPEKQFKLVPDAKFERQYFGIAVAKGNTELLQKINAGLKKIIADGTYDKIYKTW 244 Query: 249 FDGEVPTLP 257 FD EVPTLP Sbjct: 245 FDSEVPTLP 253 >ref|ZP_04630612.1| Amino acid-binding protein [Yersinia frederiksenii ATCC 33641] gb|EEQ16818.1| Amino acid-binding protein [Yersinia frederiksenii ATCC 33641] Length = 262 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 174/253 (68%), Positives = 209/253 (82%) Query: 5 KLVLLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKAISQA 64 K ++L G+ LA L+A SA AA+ TYVVG+GGTYRPFE+E +K+L GFDID+IKAI +A Sbjct: 3 KRLMLVGTCLAAVLSASSAMAAEPTYVVGSGGTYRPFEYENSQKQLEGFDIDIIKAIGKA 62 Query: 65 SNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIITNADA 124 F+++LV+TPWEGIFATLG GDRDIIISGITITDKR QMVDFS PYFPAEQ I+ D+ Sbjct: 63 EGFQVKLVNTPWEGIFATLGSGDRDIIISGITITDKRKQMVDFSDPYFPAEQTIVVPKDS 122 Query: 125 KIASLADLKKTQVAVVNSTAGDIVVSEELGKSSTAIHRFDNTVLMLEELYRGGVDAAVGD 184 K+ S+A LK V VVNS+ GDIVVS+ LGK+STAI RFDNT LML+ELY G+ AAVGD Sbjct: 123 KVDSIAALKNLNVGVVNSSTGDIVVSDVLGKNSTAIKRFDNTPLMLQELYEDGIAAAVGD 182 Query: 185 VGVIKFYIKSHPEKKFKVVGDTKFVRQYFGIAVKKGNKELLDKINAGLKQIVADGTYAKI 244 VGV KFY+K+HPEK F++V D KF RQYFGIAV KGN+EL +KIN+GL++IVADGTYA I Sbjct: 183 VGVAKFYLKTHPEKAFQLVSDDKFERQYFGIAVAKGNEELRNKINSGLQKIVADGTYANI 242 Query: 245 YKTWFDGEVPTLP 257 Y+ WFD +VPTLP Sbjct: 243 YEKWFDTQVPTLP 255 >gb|AEJ98582.1| amino acid-binding protein [Klebsiella pneumoniae KCTC 2242] Length = 255 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 178/250 (71%), Positives = 205/250 (82%), Gaps = 1/250 (0%) Query: 8 LLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKAISQASNF 67 LL + +LTAV QAA +TY VG+GGTYRPFEFE +K+L GFDID+IKAI++A F Sbjct: 5 LLKACCMIAALTAV-GQAAAETYTVGSGGTYRPFEFENSQKQLEGFDIDIIKAIAKAEGF 63 Query: 68 KIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIITNADAKIA 127 ++LV+TPWEGIFATL GDRDIIISGITITDKR QMVDFS PYFPAEQ I+ D+++ Sbjct: 64 DVKLVNTPWEGIFATLNTGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVAQDSQVD 123 Query: 128 SLADLKKTQVAVVNSTAGDIVVSEELGKSSTAIHRFDNTVLMLEELYRGGVDAAVGDVGV 187 SLA LK +V VVNS+ GDIVVSE LGK+STAI RFDNT LML+EL+ GV AAVGDVGV Sbjct: 124 SLAALKNEKVGVVNSSTGDIVVSEVLGKNSTAIKRFDNTPLMLQELFEDGVSAAVGDVGV 183 Query: 188 IKFYIKSHPEKKFKVVGDTKFVRQYFGIAVKKGNKELLDKINAGLKQIVADGTYAKIYKT 247 +K+YIK HPEK+FK+V D KF RQYFGIAV KGN ELL KINAGL++IVADGTYAKIYKT Sbjct: 184 VKYYIKQHPEKQFKLVPDAKFERQYFGIAVAKGNSELLGKINAGLQKIVADGTYAKIYKT 243 Query: 248 WFDGEVPTLP 257 WFD VPTLP Sbjct: 244 WFDDNVPTLP 253 >ref|ZP_04634895.1| Amino acid-binding protein [Yersinia intermedia ATCC 29909] gb|EEQ20904.1| Amino acid-binding protein [Yersinia intermedia ATCC 29909] Length = 262 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 173/253 (68%), Positives = 208/253 (82%) Query: 5 KLVLLAGSVLALSLTAVSAQAADQTYVVGAGGTYRPFEFETPKKELVGFDIDLIKAISQA 64 K ++L G+ LA L+A SA A + TYVVG+GGTYRPFE+E +K+L GFDID+IKAI +A Sbjct: 3 KRLMLVGTCLAAVLSAGSAMAVEPTYVVGSGGTYRPFEYENSQKQLEGFDIDIIKAIGKA 62 Query: 65 SNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDFSLPYFPAEQVIITNADA 124 F+++LV+TPWEGIFATLG GDRDIIISGITITDKR QMVDFS PYFPAEQ I+ + Sbjct: 63 EGFQVKLVNTPWEGIFATLGSGDRDIIISGITITDKRKQMVDFSDPYFPAEQTIVVAKGS 122 Query: 125 KIASLADLKKTQVAVVNSTAGDIVVSEELGKSSTAIHRFDNTVLMLEELYRGGVDAAVGD 184 K+ S+A LK V VVNS+ GDIVVS+ LGK+STAI RFDNT LML+ELY G+ AAVGD Sbjct: 123 KVNSIAALKDLNVGVVNSSTGDIVVSDVLGKNSTAIKRFDNTPLMLQELYEDGIAAAVGD 182 Query: 185 VGVIKFYIKSHPEKKFKVVGDTKFVRQYFGIAVKKGNKELLDKINAGLKQIVADGTYAKI 244 VGV KFY+K+HPEK F++V DTKF RQYFGIAV KGN+EL KIN+GL++I+ADGTYAKI Sbjct: 183 VGVAKFYLKTHPEKAFELVSDTKFERQYFGIAVAKGNEELRTKINSGLQKIIADGTYAKI 242 Query: 245 YKTWFDGEVPTLP 257 Y+ WFD +VPTLP Sbjct: 243 YEKWFDAQVPTLP 255