BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0053.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773499.1| ornithine cyclodeaminase [Herbaspirillum ser... 526 e-147 emb|CCA81736.1| ornithine cyclodeaminase (OCD) [blood disease ba... 429 e-118 ref|YP_003749407.1| ornithine cyclodeaminase (ocd) [Ralstonia so... 426 e-117 ref|YP_001668130.1| ornithine cyclodeaminase [Pseudomonas putida... 422 e-116 ref|YP_002257364.1| ornithine cyclodeaminase protein [Ralstonia ... 422 e-116 >ref|YP_003773499.1| ornithine cyclodeaminase [Herbaspirillum seropedicae SmR1] gb|ADJ61591.1| ornithine cyclodeaminase protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 268/347 (77%), Positives = 299/347 (86%) Query: 1 MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60 MVKYIGT DLQAYLATHPLP+V GGM+ YL D+LRW +FDK+ARVASHSA+GVIELMPI Sbjct: 1 MVKYIGTRDLQAYLATHPLPQVIGGMLAYLHHDYLRWREFDKTARVASHSAQGVIELMPI 60 Query: 61 SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120 SDGR Y FKYVNGHPANTAQGLLTVTAFGVLA+VASGYPRLLSELTLTTALRTAATSVLA Sbjct: 61 SDGRLYCFKYVNGHPANTAQGLLTVTAFGVLADVASGYPRLLSELTLTTALRTAATSVLA 120 Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180 A +AR +SR MA+IGNGAQSEFQ +AFH Q+GI +RL+D DPAAT +LMRNLR L Sbjct: 121 ARQMARSDSRVMAVIGNGAQSEFQILAFHHQMGIEVVRLYDTDPAATARLMRNLRACSGL 180 Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240 +LI S AEAV GADIVTT+TADKRRA I+ P M+EAGMHLNAVGGDCPGKTELH VL Sbjct: 181 QLIPCASAAEAVRGADIVTTLTADKRRACIISPAMLEAGMHLNAVGGDCPGKTELHADVL 240 Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300 + ARVVVEFAPQSRIEGEVQQMP DF VTELW+VLAG A GR A EVTVFDSVGFALED Sbjct: 241 KAARVVVEFAPQSRIEGEVQQMPADFPVTELWQVLAGHAPGRSSAAEVTVFDSVGFALED 300 Query: 301 FSALRYLDDHIDAHHAQQIDLVPVLDNPKDLYGLAIPVLPYKEQANA 347 F+ALRYLD+ +DA +Q+DL+P +D+PKDLYGLA+P +KEQANA Sbjct: 301 FAALRYLDEQVDARFTRQLDLIPAMDDPKDLYGLAVPATLWKEQANA 347 >emb|CCA81736.1| ornithine cyclodeaminase (OCD) [blood disease bacterium R229] Length = 349 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 209/333 (62%), Positives = 261/333 (78%), Gaps = 1/333 (0%) Query: 1 MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60 M +++ S + + L + G + +++ DF+RWP+FDK ARVA+HS GVIELMP+ Sbjct: 1 MTRFVDVSTMSRLVQEIGLTRLIGELADFIQSDFIRWPEFDKCARVANHSEIGVIELMPV 60 Query: 61 SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120 S+ + YAFKYVNGHP NT QGL TV AFGVLAEV +GYP LLSELTL TALRT ATS++A Sbjct: 61 SNAKNYAFKYVNGHPNNTRQGLYTVMAFGVLAEVETGYPVLLSELTLATALRTCATSLMA 120 Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180 A LARP+SR MALIGNGAQSEFQA+AFH LGI E+ ++D+DP AT+KL+RNL WP+L Sbjct: 121 ARALARPDSRRMALIGNGAQSEFQALAFHHHLGIEEIAVYDIDPLATEKLVRNLSAWPSL 180 Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240 +++RARSTAEAV GADIVTTVTADK A I+ PDMIE+GMH+N VGGDCPGKTELH VL Sbjct: 181 KIVRARSTAEAVRGADIVTTVTADKAYATIITPDMIESGMHINGVGGDCPGKTELHADVL 240 Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300 ARV VE+ PQ+RIEG++QQ+P DF V +LW VLAG+ GR+ A +VTVFDSVGFALED Sbjct: 241 RGARVFVEYEPQTRIEGDIQQLPADFPVVDLWRVLAGEVEGRQSAGQVTVFDSVGFALED 300 Query: 301 FSALRYLDDHIDAHH-AQQIDLVPVLDNPKDLY 332 +S LRY+ + + H+ + + LVP D+PKDL+ Sbjct: 301 YSMLRYVLEQAERHNLGETVQLVPWADDPKDLF 333 >ref|YP_003749407.1| ornithine cyclodeaminase (ocd) [Ralstonia solanacearum PSI07] emb|CBJ34765.1| Ornithine cyclodeaminase (OCD) [Ralstonia solanacearum PSI07] Length = 349 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 209/333 (62%), Positives = 260/333 (78%), Gaps = 1/333 (0%) Query: 1 MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60 M +++ S + + L + G + +++ DF+RWP+FDK ARVA+HS GVIELMP+ Sbjct: 1 MTRFVDVSTMSRLVQEIGLTRLIGELADFIQSDFIRWPEFDKCARVANHSEIGVIELMPV 60 Query: 61 SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120 S+ + YAFKYVNGHP NT QGL TV AFGVLAEV +GYP LLSELTL TALRT ATS++A Sbjct: 61 SNAKNYAFKYVNGHPNNTRQGLYTVMAFGVLAEVETGYPVLLSELTLATALRTCATSLMA 120 Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180 A LARP+SR MALIGNGAQSEFQA+AFH LGI E+ ++D+DP AT+KL+RNL WP+L Sbjct: 121 ARALARPDSRRMALIGNGAQSEFQALAFHHHLGIEEIAVYDIDPLATEKLVRNLSAWPSL 180 Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240 +++RARSTAEAV GADIVTTVTADK A I+ PDMIE GMH+N VGGDCPGKTELH VL Sbjct: 181 KIVRARSTAEAVRGADIVTTVTADKAYATIITPDMIEPGMHINGVGGDCPGKTELHADVL 240 Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300 ARV VE+ PQ+RIEG++QQ+P DF V +LW VLAG+ GR+ A +VTVFDSVGFALED Sbjct: 241 RGARVFVEYEPQTRIEGDIQQLPADFPVVDLWRVLAGEVEGRQSAGQVTVFDSVGFALED 300 Query: 301 FSALRYLDDHIDAHH-AQQIDLVPVLDNPKDLY 332 +S LRY+ + + H+ + + LVP D+PKDL+ Sbjct: 301 YSMLRYVLEQAERHNLGETVQLVPWADDPKDLF 333 >ref|YP_001668130.1| ornithine cyclodeaminase [Pseudomonas putida GB-1] gb|ABY97794.1| Ornithine cyclodeaminase [Pseudomonas putida GB-1] Length = 354 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 218/338 (64%), Positives = 261/338 (77%), Gaps = 1/338 (0%) Query: 1 MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60 M ++I DL + LP M +Y+R+D+LRWP F+K ARVA+H A GVIELMP+ Sbjct: 1 MTRFIDVQDLARLVNRKGLPTCLLEMAEYIRQDYLRWPAFEKCARVANHCADGVIELMPV 60 Query: 61 SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120 +D YAFKYVNGHP NT GL TV AFG LA + +G P LLSE+TLTTA+RTAATS LA Sbjct: 61 ADASRYAFKYVNGHPKNTRHGLPTVMAFGALASIDTGAPLLLSEMTLTTAIRTAATSALA 120 Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180 A +LAR +SRSMALIGNG+QSEFQAIAF+T LGI E+RLFD+DPAA+ KL+ NL + P L Sbjct: 121 ARYLAREDSRSMALIGNGSQSEFQAIAFNTLLGIDEIRLFDIDPAASAKLVANLANRPGL 180 Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240 +L ARS A+AV GADIVTTVTADK A I+ P+MIE GMHLNAVGGDCPGKTELHR ++ Sbjct: 181 KLTIARSVADAVRGADIVTTVTADKAYATILTPEMIEPGMHLNAVGGDCPGKTELHRAIV 240 Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300 E+ARV+VE+ PQSR+EGE+QQMP D VTE W V+AG+A GR A +VT+FDSVGFALED Sbjct: 241 ERARVIVEYEPQSRVEGEIQQMPADSPVTEFWRVVAGEAKGREHAEQVTLFDSVGFALED 300 Query: 301 FSALRYLDDHIDAHH-AQQIDLVPVLDNPKDLYGLAIP 337 FSALRY+ D A + I LVPVL++PKDLY L P Sbjct: 301 FSALRYVLDTAQALGIGKDIGLVPVLEDPKDLYALLQP 338 >ref|YP_002257364.1| ornithine cyclodeaminase protein [Ralstonia solanacearum IPO1609] emb|CAQ59248.1| ornithine cyclodeaminase protein [Ralstonia solanacearum IPO1609] Length = 349 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 208/333 (62%), Positives = 258/333 (77%), Gaps = 1/333 (0%) Query: 1 MVKYIGTSDLQAYLATHPLPEVTGGMVQYLREDFLRWPQFDKSARVASHSARGVIELMPI 60 M +++ S + + LP++ G + ++ DF+ WP+FDK ARVA+HS GVIELMP+ Sbjct: 1 MTRFVDVSTMSRLVQEIGLPQLIGELADCIQSDFIHWPEFDKCARVANHSEIGVIELMPV 60 Query: 61 SDGRWYAFKYVNGHPANTAQGLLTVTAFGVLAEVASGYPRLLSELTLTTALRTAATSVLA 120 S+ + YAFKYVNGHP NT QGL TV AFGVLAEV +GYP LLSELTL TALRT ATS++A Sbjct: 61 SNAKNYAFKYVNGHPNNTRQGLYTVMAFGVLAEVETGYPVLLSELTLATALRTCATSLMA 120 Query: 121 AHHLARPNSRSMALIGNGAQSEFQAIAFHTQLGITELRLFDVDPAATDKLMRNLRDWPAL 180 A LARP++R MALIGNGAQSEFQA+AFH LGI E+ ++D+DP AT+KL+RNL WP+L Sbjct: 121 ARALARPDARRMALIGNGAQSEFQALAFHHHLGIEEIAVYDIDPLATEKLVRNLSAWPSL 180 Query: 181 RLIRARSTAEAVAGADIVTTVTADKRRAVIVHPDMIEAGMHLNAVGGDCPGKTELHRGVL 240 R++ ARSTAEAV GADIVTTVTADK A I+ PDMIE GMH+N VGGDCPGKTELH VL Sbjct: 181 RIVCARSTAEAVRGADIVTTVTADKAYATIITPDMIEPGMHINGVGGDCPGKTELHADVL 240 Query: 241 EKARVVVEFAPQSRIEGEVQQMPPDFAVTELWEVLAGKAAGRRDAHEVTVFDSVGFALED 300 ARV VE+ PQ+RIEG++QQ+P DF V +LW VLAG+ AGR+ A +VTVFDSVGFALED Sbjct: 241 RGARVFVEYEPQTRIEGDIQQLPADFPVVDLWRVLAGEVAGRQSAGQVTVFDSVGFALED 300 Query: 301 FSALRYLDDHIDAHH-AQQIDLVPVLDNPKDLY 332 +S LRY+ + + + + LVP D+PKDL+ Sbjct: 301 YSMLRYVLEQAGRRNLGETVQLVPWADDPKDLF 333