BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0046.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC transporte... 611 e-173 ref|YP_004153369.1| nitrate/sulfonate/bicarbonate ABC transporte... 533 e-149 ref|YP_004236556.1| nitrate/sulfonate/bicarbonate ABC transporte... 510 e-142 ref|NP_891531.1| nitrate/sulfonate/bicarbonate ABC transporter s... 509 e-142 ref|NP_886535.1| putative periplasmic protein [Bordetella parape... 509 e-142 >ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61587.1| ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 319/342 (93%), Positives = 327/342 (95%) Query: 1 MTTRLSSKGRLRRLFTTTLALSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60 MT S K RLRRL T TLALSLLGAPL+ARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK Sbjct: 1 MTLFPSFKERLRRLLTATLALSLLGAPLMARAEGQLRIAEQFGIVYLLLNVAQDQQLIEK 60 Query: 61 HGKAAGVDIKVEWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTYGKQNVRGVASL 120 HGKAAGVDIKVEWLKLSGGSA+NDALLSGSVDIAGAGVGPLLTIWDRTYG+QNVRG ASL Sbjct: 61 HGKAAGVDIKVEWLKLSGGSAINDALLSGSVDIAGAGVGPLLTIWDRTYGRQNVRGAASL 120 Query: 121 GNFPYYLVSNNPKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNKLDKVS 180 GNFPYYLVSNNPKVKTIADF DKDRIA+PAVGVSVQSRVLQLASAKLWGDAQYN+LDK+S Sbjct: 121 GNFPYYLVSNNPKVKTIADFSDKDRIALPAVGVSVQSRVLQLASAKLWGDAQYNRLDKIS 180 Query: 181 IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYA 240 IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYA Sbjct: 181 IAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYA 240 Query: 241 TEKFRKDNPKTYGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQIIKNPEVQ 300 TEKFRKDNPKTY AFL AL+E A FI ANP+KAADIYLKVNKGNTDRKLLLQIIKNPEVQ Sbjct: 241 TEKFRKDNPKTYRAFLDALEETASFIRANPDKAADIYLKVNKGNTDRKLLLQIIKNPEVQ 300 Query: 301 FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDAHVQGGS 342 FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDD HVQGGS Sbjct: 301 FKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDPHVQGGS 342 >ref|YP_004153369.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Variovorax paradoxus EPS] gb|ADU35258.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Variovorax paradoxus EPS] Length = 336 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 266/331 (80%), Positives = 292/331 (88%) Query: 12 RRLFTTTLALSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGVDIKV 71 R+ L LL L A AEGQ+RIAEQFG VYLLLNVAQDQ+LIEKH KAAGVD KV Sbjct: 6 RKAAAFVTGLGLLAGSLAAHAEGQIRIAEQFGTVYLLLNVAQDQKLIEKHAKAAGVDAKV 65 Query: 72 EWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTYGKQNVRGVASLGNFPYYLVSNN 131 EW+KLSGGSAVNDALLSG+++IAGAGVGPLLT+WDRT GKQNV+GVASLGNFPYYLVSNN Sbjct: 66 EWIKLSGGSAVNDALLSGNIEIAGAGVGPLLTLWDRTKGKQNVKGVASLGNFPYYLVSNN 125 Query: 132 PKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNKLDKVSIAVPHPDATAA 191 P VKTIADF +KDRIA+PAVGVSVQSRVLQ ASAKLWGD ++N+LDK+S+A+PHPDA AA Sbjct: 126 PNVKTIADFTEKDRIALPAVGVSVQSRVLQFASAKLWGDKEFNRLDKISVAIPHPDAAAA 185 Query: 192 IISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKT 251 II GGTEITGHFGNPPFQEQELAGNPNAHIVL SY VLGGP+SATVLYATEKFR +NPKT Sbjct: 186 IIKGGTEITGHFGNPPFQEQELAGNPNAHIVLNSYQVLGGPASATVLYATEKFRNENPKT 245 Query: 252 YGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGL 311 Y AF+ ALDEAAKF++ANPEKAADIYLKV+ DR+LLL+IIKNPEVQFK PQNTY L Sbjct: 246 YKAFVDALDEAAKFVTANPEKAADIYLKVSNAKLDRELLLKIIKNPEVQFKTTPQNTYAL 305 Query: 312 AEFMHRVGAIKNKPASVKDYFFDDAHVQGGS 342 AEFMHRVGAIKNKPASVKDYFFDDA G+ Sbjct: 306 AEFMHRVGAIKNKPASVKDYFFDDAQNASGN 336 >ref|YP_004236556.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47989.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 353 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 255/320 (79%), Positives = 288/320 (90%), Gaps = 1/320 (0%) Query: 24 LGAPLVARAE-GQLRIAEQFGIVYLLLNVAQDQQLIEKHGKAAGVDIKVEWLKLSGGSAV 82 L AP +A+AE G+LRIA+QFGIVYLLLNVAQDQ+LIEKHGKAAGVDI+VE+L+LSGGSAV Sbjct: 34 LVAPGIAQAEEGRLRIAQQFGIVYLLLNVAQDQKLIEKHGKAAGVDIQVEFLQLSGGSAV 93 Query: 83 NDALLSGSVDIAGAGVGPLLTIWDRTYGKQNVRGVASLGNFPYYLVSNNPKVKTIADFGD 142 NDALLSG +DIAGAGVGPL T+WDRT G+QNV+GVASLGNFPYYLVSNNP VKTIADF D Sbjct: 94 NDALLSGGIDIAGAGVGPLFTLWDRTRGRQNVKGVASLGNFPYYLVSNNPAVKTIADFTD 153 Query: 143 KDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNKLDKVSIAVPHPDATAAIISGGTEITGH 202 KDRIA+PAVGVSVQSRVLQ ASAKLWGD ++N+LDK+ +AVPHPDA AAII GGTEITGH Sbjct: 154 KDRIALPAVGVSVQSRVLQFASAKLWGDKEFNRLDKIQVAVPHPDAAAAIIKGGTEITGH 213 Query: 203 FGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYGAFLGALDEA 262 FGNPPFQEQELAGNPNA IVL SYDVLGGP+SATVLYATEKFRK++PKTY AFL L +A Sbjct: 214 FGNPPFQEQELAGNPNARIVLNSYDVLGGPASATVLYATEKFRKESPKTYQAFLAGLHDA 273 Query: 263 AKFISANPEKAADIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIK 322 A+F++ANPEKAADIYLKV TDR LLL+II+NPEVQFK+ P+NT GL +F+HRVGAIK Sbjct: 274 AQFVAANPEKAADIYLKVTGAKTDRALLLKIIRNPEVQFKVQPENTLGLGQFLHRVGAIK 333 Query: 323 NKPASVKDYFFDDAHVQGGS 342 NKP ++KDYFFDDA GS Sbjct: 334 NKPEALKDYFFDDALTARGS 353 >ref|NP_891531.1| nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE35361.1| putative periplasmic protein [Bordetella bronchiseptica RB50] Length = 347 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 254/347 (73%), Positives = 294/347 (84%), Gaps = 5/347 (1%) Query: 1 MTTRLSSKGRLRRLFTTTL-----ALSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQ 55 M + + + RL R + +L A+ L +P A AEG++RIAEQ+GIVYLLLNVA+DQ Sbjct: 1 MRSHETVRQRLARYVSASLLGAFIAVLALASPTPALAEGRIRIAEQYGIVYLLLNVARDQ 60 Query: 56 QLIEKHGKAAGVDIKVEWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTYGKQNVR 115 QLIEKHG+ AGVDI V+W +LSGG+AVNDALLSG++DIAGAGVGPLLTIWDRT G+QNVR Sbjct: 61 QLIEKHGRQAGVDIDVQWTRLSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTLGRQNVR 120 Query: 116 GVASLGNFPYYLVSNNPKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNK 175 GVASLGNFPYYLVSNNP+VKTIADF DKDRIA+PAVGVSVQ+RVLQLASAKLWGD YN+ Sbjct: 121 GVASLGNFPYYLVSNNPRVKTIADFTDKDRIALPAVGVSVQARVLQLASAKLWGDEHYNR 180 Query: 176 LDKVSIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSA 235 LD +S+A+PHPDA AAIISGGTEITGHFGNPPFQEQELAGN NA IVLKSYDVLGGP S+ Sbjct: 181 LDAISVALPHPDAAAAIISGGTEITGHFGNPPFQEQELAGNANARIVLKSYDVLGGPGSS 240 Query: 236 TVLYATEKFRKDNPKTYGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQIIK 295 TVL+ATEKFR++NPKTY AF AL EAA+F SA+PE+AADIY+++ DR L++II Sbjct: 241 TVLFATEKFRRENPKTYAAFQAALQEAAQFASAHPEQAADIYIRLAGAKIDRDFLIRIIS 300 Query: 296 NPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDAHVQGGS 342 NPEVQFK+APQNTY LA FMH+VGAIKNKP S +DYFFDDA GS Sbjct: 301 NPEVQFKVAPQNTYALAAFMHKVGAIKNKPQSWRDYFFDDAATAQGS 347 >ref|NP_886535.1| putative periplasmic protein [Bordetella parapertussis 12822] emb|CAE39688.1| putative periplasmic protein [Bordetella parapertussis] Length = 347 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 254/347 (73%), Positives = 294/347 (84%), Gaps = 5/347 (1%) Query: 1 MTTRLSSKGRLRRLFTTTL-----ALSLLGAPLVARAEGQLRIAEQFGIVYLLLNVAQDQ 55 M + + + RL R + +L A+ L +P A AEG++RIAEQ+GIVYLLLNVA+DQ Sbjct: 1 MRSHETVRQRLARYVSASLLGAFIAVLALASPTPALAEGRIRIAEQYGIVYLLLNVARDQ 60 Query: 56 QLIEKHGKAAGVDIKVEWLKLSGGSAVNDALLSGSVDIAGAGVGPLLTIWDRTYGKQNVR 115 QLIEKHG+ AGVDI V+W +LSGG+AVNDALLSG++DIAGAGVGPLLTIWDRT G+QNVR Sbjct: 61 QLIEKHGRQAGVDIDVQWTRLSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTLGRQNVR 120 Query: 116 GVASLGNFPYYLVSNNPKVKTIADFGDKDRIAVPAVGVSVQSRVLQLASAKLWGDAQYNK 175 GVASLGNFPYYLVSNNP+VKTIADF DKDRIA+PAVGVSVQ+RVLQLASAKLWGD YN+ Sbjct: 121 GVASLGNFPYYLVSNNPRVKTIADFTDKDRIALPAVGVSVQARVLQLASAKLWGDEHYNR 180 Query: 176 LDKVSIAVPHPDATAAIISGGTEITGHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSA 235 LD +S+A+PHPDA AAIISGGTEITGHFGNPPFQEQELAGN NA IVLKSYDVLGGP S+ Sbjct: 181 LDAISVALPHPDAAAAIISGGTEITGHFGNPPFQEQELAGNANARIVLKSYDVLGGPGSS 240 Query: 236 TVLYATEKFRKDNPKTYGAFLGALDEAAKFISANPEKAADIYLKVNKGNTDRKLLLQIIK 295 TVL+ATEKFR++NPKTY AF AL EAA+F SA+PE+AADIY+++ DR L++II Sbjct: 241 TVLFATEKFRRENPKTYAAFQAALQEAAQFASAHPEQAADIYIRLAGAKIDRDFLIRIIS 300 Query: 296 NPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFDDAHVQGGS 342 NPEVQFK+APQNTY LA FMH+VGAIKNKP S +DYFFDDA GS Sbjct: 301 NPEVQFKVAPQNTYALAVFMHKVGAIKNKPQSWRDYFFDDAATAQGS 347