BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0043.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporte...   169   1e-40
gb|ABC26887.1| ABC-type nitrate/sulfonate/bicarbonate transport ...   164   5e-39
ref|YP_586274.1| ABC transporter ATP-binding protein [Cupriavidu...   147   6e-34
ref|YP_004153370.1| ABC transporter [Variovorax paradoxus EPS] >...   139   1e-31
ref|YP_841730.1| ABC transporter ATPase [Ralstonia eutropha H16]...   138   3e-31

>ref|YP_003773494.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ61586.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/104 (79%), Positives = 90/104 (86%)

Query: 1   MHNPAAETASVSAAASLQPLLQVDRVSLQYRTATAVVQATHDVSFDVHTADRFVLIGPCG 60
           MH    E  S++A     PLLQVDRVSLQYR+ATAVVQATH+VSFDV+ ADRFVL+GP G
Sbjct: 1   MHVSTHEITSLAAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG 60

Query: 61  CGKSSLLKSVAGFLPPAGGEIRLDGQVVHQPGPDRIVVFQEFDQ 104
           CGKSSLLKSVAGFLPPA GEIRLDGQV+HQPGPDRIVVFQEFDQ
Sbjct: 61  CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQ 104


>gb|ABC26887.1| ABC-type nitrate/sulfonate/bicarbonate transport system ATPase
           component [Herbaspirillum seropedicae]
          Length = 138

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 83/104 (79%), Positives = 90/104 (86%)

Query: 1   MHNPAAETASVSAAASLQPLLQVDRVSLQYRTATAVVQATHDVSFDVHTADRFVLIGPCG 60
           MH    E  S++A     PLLQVDRVSLQYR+ATAVVQATH+VSFDV+ ADRFVL+GP G
Sbjct: 1   MHVSTHEITSLAAQDLPAPLLQVDRVSLQYRSATAVVQATHEVSFDVYPADRFVLLGPSG 60

Query: 61  CGKSSLLKSVAGFLPPAGGEIRLDGQVVHQPGPDRIVVFQEFDQ 104
           CGKSSLLKSVAGFLPPA GEIRLDGQV+HQPGPDRIVVFQEFDQ
Sbjct: 61  CGKSSLLKSVAGFLPPAAGEIRLDGQVLHQPGPDRIVVFQEFDQ 104


>ref|YP_586274.1| ABC transporter ATP-binding protein [Cupriavidus metallidurans
           CH34]
 gb|ABF11005.1| ABC transporter (ATP-binding component) [Cupriavidus metallidurans
           CH34]
          Length = 279

 Score =  147 bits (371), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 72/97 (74%), Positives = 82/97 (84%)

Query: 8   TASVSAAASLQPLLQVDRVSLQYRTATAVVQATHDVSFDVHTADRFVLIGPCGCGKSSLL 67
           +A +   AS +PLLQVD VSL+YRTA  VV+ATH VSFDVH  DRFVL+GP GCGKS+LL
Sbjct: 6   SAHLRVVASHEPLLQVDGVSLEYRTAQRVVRATHRVSFDVHATDRFVLLGPSGCGKSTLL 65

Query: 68  KSVAGFLPPAGGEIRLDGQVVHQPGPDRIVVFQEFDQ 104
           K+VAGF+PPA GEIRLDGQ V +PGPDRIVVFQEFDQ
Sbjct: 66  KAVAGFVPPAEGEIRLDGQRVQKPGPDRIVVFQEFDQ 102


>ref|YP_004153370.1| ABC transporter [Variovorax paradoxus EPS]
 gb|ADU35259.1| ABC transporter related protein [Variovorax paradoxus EPS]
          Length = 290

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/88 (77%), Positives = 74/88 (84%)

Query: 17  LQPLLQVDRVSLQYRTATAVVQATHDVSFDVHTADRFVLIGPCGCGKSSLLKSVAGFLPP 76
           L PLLQVD VSL+YRT   VV+ATH VSFDVH ADRFVL+GP GCGKS+LLK+V GF+ P
Sbjct: 32  LAPLLQVDGVSLEYRTPERVVRATHRVSFDVHAADRFVLLGPSGCGKSTLLKAVGGFIAP 91

Query: 77  AGGEIRLDGQVVHQPGPDRIVVFQEFDQ 104
             GEIRLDGQ V QPGPDRIVVFQEFDQ
Sbjct: 92  VEGEIRLDGQRVTQPGPDRIVVFQEFDQ 119


>ref|YP_841730.1| ABC transporter ATPase [Ralstonia eutropha H16]
 emb|CAJ97000.1| ABC-type transporter, ATPase component: NitT family [Ralstonia
           eutropha H16]
          Length = 278

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/86 (75%), Positives = 75/86 (87%)

Query: 19  PLLQVDRVSLQYRTATAVVQATHDVSFDVHTADRFVLIGPCGCGKSSLLKSVAGFLPPAG 78
           PLLQVD VSL+YRT   +V+ATH VSFDVH  DRFVL+GP GCGKS+LLK+VAGF+PP+ 
Sbjct: 15  PLLQVDGVSLEYRTPERIVRATHRVSFDVHAGDRFVLLGPSGCGKSTLLKAVAGFVPPSE 74

Query: 79  GEIRLDGQVVHQPGPDRIVVFQEFDQ 104
           GEIRL+G+ V QPGPDRIVVFQEFDQ
Sbjct: 75  GEIRLEGRRVLQPGPDRIVVFQEFDQ 100