BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0042.p         (141 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778161.1| amino acid ABC transporter permease [Herbasp...   192   1e-47
ref|YP_004755051.1| branched-chain amino acid ABC transporter pe...   164   5e-39
ref|ZP_08272539.1| ABC-type branched-chain amino acid transport ...   161   3e-38
ref|YP_002945366.1| inner-membrane translocator [Variovorax para...   160   6e-38
ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha...   152   1e-35

>ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ66253.1| ABC-type amino acid transport system, permease component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/127 (98%), Positives = 127/127 (100%)

Query: 1   MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60
           MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA
Sbjct: 1   MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60

Query: 61  GYLCGQSLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120
           GY+CGQ+LKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA
Sbjct: 61  GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120

Query: 121 LQAPFTG 127
           LQAPFTG
Sbjct: 121 LQAPFTG 127


>ref|YP_004755051.1| branched-chain amino acid ABC transporter permease [Collimonas
           fungivorans Ter331]
 gb|AEK64228.1| ABC-type branched-chain amino acid transport system, permease
           component [Collimonas fungivorans Ter331]
          Length = 335

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/127 (78%), Positives = 111/127 (87%)

Query: 1   MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60
           +NKKIG  +LL   LAAPFGIYPVFLMK++CFALFACAFNLLIG+TGLLSFGHAAF G A
Sbjct: 12  VNKKIGYGLLLAAALAAPFGIYPVFLMKIICFALFACAFNLLIGFTGLLSFGHAAFFGGA 71

Query: 61  GYLCGQSLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120
           GY+ G +L+  GLPTE+GL+ GT TGALIGLVMG LAIRRQGIYFTMITLALAQML+FV 
Sbjct: 72  GYIAGYALQTLGLPTEVGLLAGTATGALIGLVMGSLAIRRQGIYFTMITLALAQMLYFVC 131

Query: 121 LQAPFTG 127
           LQ PFTG
Sbjct: 132 LQMPFTG 138


>ref|ZP_08272539.1| ABC-type branched-chain amino acid transport system, permease
           component [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33987.1| ABC-type branched-chain amino acid transport system, permease
           component [Oxalobacteraceae bacterium IMCC9480]
          Length = 320

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 95/127 (74%), Positives = 108/127 (85%)

Query: 1   MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60
           MNKKIG  ++L  LLAAPF +YPVFLMK+LCFALFACAFNLLIG+TGLLSFGHAAF G A
Sbjct: 1   MNKKIGYVIVLAALLAAPFWLYPVFLMKVLCFALFACAFNLLIGFTGLLSFGHAAFFGGA 60

Query: 61  GYLCGQSLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120
           GY+ G ++   GLP E+G+++GTL GALIGL MG  AIRRQGIYFTMITLALAQML+FV 
Sbjct: 61  GYVAGYAMATLGLPPEVGILLGTLAGALIGLFMGSFAIRRQGIYFTMITLALAQMLYFVF 120

Query: 121 LQAPFTG 127
           LQA FTG
Sbjct: 121 LQAKFTG 127


>ref|YP_002945366.1| inner-membrane translocator [Variovorax paradoxus S110]
 gb|ACS20100.1| inner-membrane translocator [Variovorax paradoxus S110]
          Length = 328

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 95/131 (72%), Positives = 109/131 (83%), Gaps = 1/131 (0%)

Query: 8   AVLLILLLAAPF-GIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYLCGQ 66
            VLL+ L+AAPF G YPVF+MK+LCFALFACAFNLL+GYTG+LSFGHAAFLG + YL G 
Sbjct: 10  GVLLLALIAAPFIGFYPVFVMKVLCFALFACAFNLLLGYTGMLSFGHAAFLGGSAYLTGH 69

Query: 67  SLKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFT 126
           +LKVW L  ELGLI GTL GAL+GLV G LAIRRQGIYF+MITLALAQM++FVALQAPFT
Sbjct: 70  ALKVWHLTPELGLIAGTLAGALLGLVFGWLAIRRQGIYFSMITLALAQMMYFVALQAPFT 129

Query: 127 GWSNSWNTTMR 137
           G  +   +  R
Sbjct: 130 GGEDGLQSVPR 140


>ref|YP_297569.1| inner-membrane translocator [Ralstonia eutropha JMP134]
 gb|AAZ62725.1| amino acid/amide ABC transporter membrane protein 2, HAAT family
           [Ralstonia eutropha JMP134]
          Length = 342

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/108 (76%), Positives = 96/108 (88%)

Query: 20  GIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYLCGQSLKVWGLPTELGL 79
           G YPVF++K+LCFALFACAFNLLIGYTGLLSFGHAAF G AGY+ G+++KVWG+  E+GL
Sbjct: 40  GAYPVFVLKVLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYISGEAMKVWGVTPEIGL 99

Query: 80  IIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTG 127
           I+GT  GA IG V+G LAIRRQGIYF+MITLALAQMLFF+ LQAPFTG
Sbjct: 100 ILGTAGGAAIGYVVGSLAIRRQGIYFSMITLALAQMLFFICLQAPFTG 147