BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0041.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778162.1| branched-chain amino acid ABC transporter pe... 434 e-119 ref|ZP_01914817.1| ABC-type transporter, permease component [Lim... 421 e-116 ref|YP_004755052.1| ABC branched chain amino acid family transpo... 416 e-114 ref|ZP_08272538.1| ABC branched-chain amino acid family transpor... 411 e-113 ref|YP_560959.1| branched chain amino acid ABC transporter inner... 397 e-109 >ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ66254.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 289/294 (98%), Positives = 293/294 (99%) Query: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG Sbjct: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 Query: 61 LTYLGLNYWVMLIVAPILVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 L+YLGLNYWVMLIVAPILVG FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI Sbjct: 61 LSYLGLNYWVMLIVAPILVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 Query: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVICFATWFVIEKTRLGAYLRAGT 180 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASL++CFATWFVIEKTRLGAYLRAGT Sbjct: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGT 180 Query: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG Sbjct: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 Query: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIVMAIVLMVRPAGLFGKEK 294 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFI+MAIVLMVRPAGLFGKEK Sbjct: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294 >ref|ZP_01914817.1| ABC-type transporter, permease component [Limnobacter sp. MED105] gb|EDM84133.1| ABC-type transporter, permease component [Limnobacter sp. MED105] Length = 294 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 262/294 (89%), Positives = 282/294 (95%) Query: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 ME+FGIPLQA L QLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHG LYM+GAF AWMG Sbjct: 1 MEIFGIPLQAFLGQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALYMMGAFFAWMG 60 Query: 61 LTYLGLNYWVMLIVAPILVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 + Y LNYWVML++AP+LVG FGI+IEKTMLRWLYKLDHLYGLLLTFGITLM+EGIFRSI Sbjct: 61 MAYFNLNYWVMLLLAPLLVGAFGILIEKTMLRWLYKLDHLYGLLLTFGITLMLEGIFRSI 120 Query: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVICFATWFVIEKTRLGAYLRAGT 180 YGVSGQPYSVP+ LQGATNLGFM+LPNYRAWVVVASLV+CFATW +IEKT+LGA LRAGT Sbjct: 121 YGVSGQPYSVPEALQGATNLGFMILPNYRAWVVVASLVVCFATWIMIEKTKLGALLRAGT 180 Query: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 ENP+LVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQ+SPLMGSNLIITVFAVVVIG Sbjct: 181 ENPRLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQISPLMGSNLIITVFAVVVIG 240 Query: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIVMAIVLMVRPAGLFGKEK 294 GMGSILGSIITGL LG++EGLTRVFYPELSATVVFI+MAIVLM+RPAGLFG+EK Sbjct: 241 GMGSILGSIITGLTLGIVEGLTRVFYPELSATVVFIIMAIVLMIRPAGLFGREK 294 >ref|YP_004755052.1| ABC branched chain amino acid family transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK64229.1| ABC branched chain amino acid family transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 294 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 265/294 (90%), Positives = 283/294 (96%) Query: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 ME+FGIP QAL+SQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHG LYM+GAFLAW+G Sbjct: 1 MEIFGIPFQALMSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALYMMGAFLAWIG 60 Query: 61 LTYLGLNYWVMLIVAPILVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 LTY LNYWVML +AP+LVGLFGIVIE+TMLRWLYKLDHLYGLLLTFGITLM+EGIFRS Sbjct: 61 LTYFNLNYWVMLALAPLLVGLFGIVIERTMLRWLYKLDHLYGLLLTFGITLMVEGIFRSF 120 Query: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVICFATWFVIEKTRLGAYLRAGT 180 YGVSGQP+SVP+LL GAT+LGFMVLPNYRAWVV+ASL +CFATWFVIEKT+LGAYLRAGT Sbjct: 121 YGVSGQPFSVPELLSGATDLGFMVLPNYRAWVVLASLTVCFATWFVIEKTKLGAYLRAGT 180 Query: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 ENPKLVEAFG+NVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLII VFAVVVIG Sbjct: 181 ENPKLVEAFGVNVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIIVVFAVVVIG 240 Query: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIVMAIVLMVRPAGLFGKEK 294 GMGSI+GSIITGL LG+IEGLTRVFYPE SATVVFIVMAIVLM+RPAGLFGKEK Sbjct: 241 GMGSIMGSIITGLGLGVIEGLTRVFYPEASATVVFIVMAIVLMIRPAGLFGKEK 294 >ref|ZP_08272538.1| ABC branched-chain amino acid family transporter, inner membrane subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33986.1| ABC branched-chain amino acid family transporter, inner membrane subunit [Oxalobacteraceae bacterium IMCC9480] Length = 294 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 258/294 (87%), Positives = 279/294 (94%) Query: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 ME+FG+PLQA++SQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHG LYMLGAF AW+G Sbjct: 1 MEIFGVPLQAMMSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALYMLGAFSAWIG 60 Query: 61 LTYLGLNYWVMLIVAPILVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 LTY GLNYW MLIV P++VGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITL++EG+ RSI Sbjct: 61 LTYFGLNYWTMLIVGPLVVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLVVEGVLRSI 120 Query: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVICFATWFVIEKTRLGAYLRAGT 180 YGVSGQ Y P+ L GAT+LGFM+LPNYRAW+VVASL +CFATWFVIEKTRLGAYLRAGT Sbjct: 121 YGVSGQSYPAPEALSGATDLGFMILPNYRAWIVVASLAVCFATWFVIEKTRLGAYLRAGT 180 Query: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLII VFAVVVIG Sbjct: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIIVVFAVVVIG 240 Query: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIVMAIVLMVRPAGLFGKEK 294 GMGSILGSI+TGL LG+IEG+TRVFYPE SATVVF++MAIVLM+RPAGLFGKEK Sbjct: 241 GMGSILGSILTGLSLGVIEGMTRVFYPEASATVVFVIMAIVLMIRPAGLFGKEK 294 >ref|YP_560959.1| branched chain amino acid ABC transporter inner membrane protein [Burkholderia xenovorans LB400] gb|ABE32907.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Burkholderia xenovorans LB400] Length = 294 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 251/294 (85%), Positives = 279/294 (94%) Query: 1 MELFGIPLQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMG 60 ME+FG+PL A+LSQLLLGLVNGSFYA+LSLGLAVIFGLLNVINFAHG L+MLGA LAWMG Sbjct: 1 MEIFGVPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLAWMG 60 Query: 61 LTYLGLNYWVMLIVAPILVGLFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSI 120 L+Y GL YWVML++AP++VGLFG+ IE++MLRWLYKLDHLYGLLLTFG+TL++EG+FRSI Sbjct: 61 LSYFGLPYWVMLVLAPLIVGLFGMAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSI 120 Query: 121 YGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVICFATWFVIEKTRLGAYLRAGT 180 YG SGQPY VP L GATNLGFM LPNYRAWVVVASLV+CFATWFVIEKTRLGAYLRAGT Sbjct: 121 YGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRAGT 180 Query: 181 ENPKLVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIG 240 ENPKLVEAFGINVPLM+TLTYGFGVALAAFAGVLAAPVIQVSPLMG +IITVFAVVVIG Sbjct: 181 ENPKLVEAFGINVPLMITLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG 240 Query: 241 GMGSILGSIITGLVLGLIEGLTRVFYPELSATVVFIVMAIVLMVRPAGLFGKEK 294 GMGSI+GSI+TGL+LG+IEGLTRVFYPE SATVVF++MA+VL+VRPAGLFGKEK Sbjct: 241 GMGSIMGSILTGLMLGVIEGLTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK 294