BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0039.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778163.1| amino acid ABC transporter periplasmic prote... 676 0.0 ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, ... 600 e-169 ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 583 e-164 ref|YP_297571.1| extracellular ligand-binding receptor [Ralstoni... 552 e-155 ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidu... 550 e-154 >ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19671.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ66255.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 676 bits (1743), Expect = 0.0, Method: Composition-based stats. Identities = 385/402 (95%), Positives = 397/402 (98%) Query: 3 MKLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 62 MKLKAMALA+TAAAA FA+A ASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA Sbjct: 1 MKLKAMALAITAAAAVFASASASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 60 Query: 63 DMGGSINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEK 122 DMGG+INGKKIEL+VADHQNKADVAASKAREWFDQQGVD+LIGGTNSGTALASAKVAAEK Sbjct: 61 DMGGAINGKKIELLVADHQNKADVAASKAREWFDQQGVDMLIGGTNSGTALASAKVAAEK 120 Query: 123 KKVYFSVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 182 KKVY +GAG+ARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH Sbjct: 121 KKVYMQIGAGSARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 180 Query: 183 SLESDTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 242 SLESDTANVVKASGGTVVG+VKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA Sbjct: 181 SLESDTANVVKASGGTVVGAVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 240 Query: 243 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK 302 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK Sbjct: 241 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK 300 Query: 303 MPSSLQAGDYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDM 362 MPSSLQA DYSAALQYLK+VKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRV+HDM Sbjct: 301 MPSSLQAADYSAALQYLKVVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDM 360 Query: 363 YLYQVKAQADSKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 404 YLYQVKAQ++SKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK Sbjct: 361 YLYQVKAQSESKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 402 >ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK64230.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 408 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 322/404 (79%), Positives = 353/404 (87%) Query: 1 MKMKLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMA 60 M +KLK +A+AV + A ASAQISGD IKIGFITD+S VYSDIDG GGAEAIKMA Sbjct: 5 MNIKLKTLAVAVGSTLALGLATQASAQISGDTIKIGFITDMSSVYSDIDGPGGAEAIKMA 64 Query: 61 IADMGGSINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAA 120 IADMGG+INGKKIELVVADHQNKAD+A+SKAREWFDQQG+D+LIGGTNSGTALA AK+A Sbjct: 65 IADMGGAINGKKIELVVADHQNKADIASSKAREWFDQQGLDMLIGGTNSGTALAMAKIAV 124 Query: 121 EKKKVYFSVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAF 180 EKKK +F +GAG+ RLTNEEC+PYTVHYAYDT ALA GTGSAVVKQGGKSW+FLTADYAF Sbjct: 125 EKKKPFFEIGAGSTRLTNEECTPYTVHYAYDTYALAHGTGSAVVKQGGKSWYFLTADYAF 184 Query: 181 GHSLESDTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSV 240 G SLE DT VVK+SGGTV+G+VKHPL ASDFSSF+LQAQSSKAQIIGLANAGGD INSV Sbjct: 185 GASLEKDTTAVVKSSGGTVLGAVKHPLNASDFSSFMLQAQSSKAQIIGLANAGGDLINSV 244 Query: 241 KAANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVR 300 KAANEFG+TK AKLAGLLVFIND+HSLTLK T+G+YLTDSWYWD N+E+R +AKRYF Sbjct: 245 KAANEFGVTKNAKLAGLLVFINDIHSLTLKQTQGMYLTDSWYWDQNDESRKWAKRYFEKM 304 Query: 301 KKMPSSLQAGDYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVH 360 KK PSSLQAGDYSAA+QYL VK IGTDD DKVM LRKAKFNDMY KN YLRADGRVVH Sbjct: 305 KKEPSSLQAGDYSAAMQYLAAVKTIGTDDGDKVMEQLRKAKFNDMYAKNAYLRADGRVVH 364 Query: 361 DMYLYQVKAQADSKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 404 DM LYQVKA ADSKYPWDY +QTIP EQA+ +KAESKCA WK Sbjct: 365 DMTLYQVKAPADSKYPWDYLNKIQTIPGEQAFASKAESKCALWK 408 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 302/399 (75%), Positives = 348/399 (87%) Query: 6 KAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIADMG 65 K M LA++A A ASAQISGD +KIGFITDISG+YSDIDGQGG EAIKMAIAD G Sbjct: 11 KTMTLAISAVCALAFAGSASAQISGDTVKIGFITDISGLYSDIDGQGGVEAIKMAIADFG 70 Query: 66 GSINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEKKKV 125 G++NGKKIEL+ ADHQNKAD+AASKAREWFDQQGVD+LIGGTNSGT LA +KVA EKKK Sbjct: 71 GTLNGKKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAMSKVALEKKKP 130 Query: 126 YFSVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLE 185 + S+GAGTARLTNEEC+PYT+HYAYDTVALAKGTG+AVVKQGGKSWFFLTADYAFG SLE Sbjct: 131 FISIGAGTARLTNEECTPYTLHYAYDTVALAKGTGAAVVKQGGKSWFFLTADYAFGASLE 190 Query: 186 SDTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKAANE 245 +DT +VVKA+GGTV GSV+HPL ASDFSSFLLQAQ+SKAQI+GLANAGGD +N++KAANE Sbjct: 191 NDTTSVVKANGGTVSGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTVNAIKAANE 250 Query: 246 FGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPS 305 FG+ KT KLAGLL+FINDVHSLT K T+G+YLTDSWYWD N+E+R +++RYF KKMPS Sbjct: 251 FGVNKTMKLAGLLMFINDVHSLTPKLTQGMYLTDSWYWDQNDESRKWSRRYFEKMKKMPS 310 Query: 306 SLQAGDYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDMYLY 365 SLQA DYSA L YL VK G+DD+DKVMA +RK K NDMY KNG +R DG ++HDMYL Sbjct: 311 SLQAADYSATLTYLNAVKATGSDDTDKVMAQMRKTKINDMYAKNGMIRDDGSMIHDMYLM 370 Query: 366 QVKAQADSKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 404 QVK+ +SKYPWDYYK++QTIP EQA+TTKAE+KCA+WK Sbjct: 371 QVKSPTESKYPWDYYKVIQTIPGEQAFTTKAETKCASWK 409 >ref|YP_297571.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ62727.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Ralstonia eutropha JMP134] Length = 402 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 301/402 (74%), Positives = 337/402 (83%), Gaps = 1/402 (0%) Query: 3 MKLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 62 MK +A A+ A + A+AQ+SGD +KIGFITD+SG+Y+DIDGQGG EAIKMAI Sbjct: 1 MKKTRLAAAMAAIVMGAVSFNAAAQVSGDTVKIGFITDLSGLYADIDGQGGVEAIKMAIE 60 Query: 63 DMGGSINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEK 122 D GG + GK IELV ADHQNKAD+AASKAREW DQQG+DVLIGGTNSGTALA KVAAEK Sbjct: 61 DAGGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDVLIGGTNSGTALAMNKVAAEK 120 Query: 123 KKVYFSVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 182 K+VY + GAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH Sbjct: 121 KRVYINNGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 180 Query: 183 SLESDTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 242 SLESDTA VVKA+GGTV+GSV+HPL ASDFSSFLLQAQ+SKAQI+GLANAGGD INS+KA Sbjct: 181 SLESDTAAVVKANGGTVLGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKA 240 Query: 243 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK 302 A EFGITKT K+AGLL+FIND+HSL LKNTEGL +TDSWYWD N++TR FA RYF+ KK Sbjct: 241 AKEFGITKTMKIAGLLMFINDIHSLGLKNTEGLLMTDSWYWDMNDDTRKFANRYFSKMKK 300 Query: 303 MPSSLQAGDYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDM 362 MPSSLQA DYSA YLK V TDD DKVMA L+K K ND Y K GY+R DGR +HDM Sbjct: 301 MPSSLQAADYSAVSTYLKAVAAAKTDDPDKVMAELKKTKINDFYTK-GYIRQDGRGIHDM 359 Query: 363 YLYQVKAQADSKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 404 YL QVK+ A+SK PWDY K+V TIP +QA+TT AESKC+ K Sbjct: 360 YLMQVKSPAESKKPWDYLKIVATIPGDQAFTTVAESKCSMMK 401 >ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF10390.1| ABC-type transporter, periplasmic component [Cupriavidus metallidurans CH34] Length = 402 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 295/402 (73%), Positives = 334/402 (83%), Gaps = 1/402 (0%) Query: 3 MKLKAMALAVTAAAAAFATAPASAQISGDVIKIGFITDISGVYSDIDGQGGAEAIKMAIA 62 MK+ +A+AV A ASAQ+SGD +KIG+ITD+SG+Y+DIDG GG EA+KMAI Sbjct: 1 MKMTRLAVAVAATVLGAFAGGASAQVSGDTVKIGYITDMSGLYADIDGPGGLEAVKMAIE 60 Query: 63 DMGGSINGKKIELVVADHQNKADVAASKAREWFDQQGVDVLIGGTNSGTALASAKVAAEK 122 D GG + GK IELV ADHQNKAD+AASKAREW DQQG+D+L+GGTNS T LA KVA EK Sbjct: 61 DHGGKVLGKPIELVSADHQNKADIAASKAREWMDQQGLDMLLGGTNSATGLAMNKVAQEK 120 Query: 123 KKVYFSVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGH 182 K+VYF+VGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGK WFFLTADYAFGH Sbjct: 121 KRVYFNVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKKWFFLTADYAFGH 180 Query: 183 SLESDTANVVKASGGTVVGSVKHPLGASDFSSFLLQAQSSKAQIIGLANAGGDFINSVKA 242 SLE+DTA VVKA+GGTVVGSV+HPL ASDFSSFLLQAQSSKA I+GLANAGGD IN++KA Sbjct: 181 SLENDTAAVVKANGGTVVGSVRHPLSASDFSSFLLQAQSSKADILGLANAGGDTINAIKA 240 Query: 243 ANEFGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKK 302 A EFGITK K+AGLL+FIND+HSL LKNTEGL +TDSWYWD N++TR FA R+F KK Sbjct: 241 AKEFGITKNMKIAGLLMFINDIHSLGLKNTEGLLMTDSWYWDMNDDTRKFANRFFGKMKK 300 Query: 303 MPSSLQAGDYSAALQYLKIVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVVHDM 362 MPSSLQA DYSA YLK V+ TDD DKVMA L+K K +D Y K+ Y+RADGR +HDM Sbjct: 301 MPSSLQAADYSAISTYLKAVEAAKTDDPDKVMAELKKMKISDFYNKS-YIRADGRNIHDM 359 Query: 363 YLYQVKAQADSKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 404 YL QVKA ADSK PWDY K+V TIP +QA+TT AESKCA K Sbjct: 360 YLMQVKAPADSKKPWDYLKIVTTIPGDQAFTTPAESKCALLK 401