BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0037.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspir... 457 e-127 ref|YP_004755054.1| putative ABC transporter [Collimonas fungivo... 383 e-104 ref|ZP_01914819.1| ABC transporter related protein [Limnobacter ... 380 e-103 ref|YP_297572.1| ABC transporter related [Ralstonia eutropha JMP... 372 e-101 ref|YP_004680664.1| high-affinity branched-chain amino acid tran... 372 e-101 >ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ66256.1| ABC-type amino acid transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 242 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 241/242 (99%), Positives = 242/242 (100%) Query: 11 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 70 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL Sbjct: 1 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 60 Query: 71 VGTRKGSIKINGQETINLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM 130 VGTRKGSIKINGQETINLATHKIAH+GVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM Sbjct: 61 VGTRKGSIKINGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGM 120 Query: 131 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA 190 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA Sbjct: 121 SIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQA 180 Query: 191 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL 250 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL Sbjct: 181 LARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELL 240 Query: 251 GV 252 GV Sbjct: 241 GV 242 >ref|YP_004755054.1| putative ABC transporter [Collimonas fungivorans Ter331] gb|AEK64231.1| putative ABC transporter [Collimonas fungivorans Ter331] Length = 253 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 201/252 (79%), Positives = 220/252 (87%) Query: 1 MSTATMNAAAMTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGR 60 MS + ++ + L I +LQ+WYGESHILHNVNL+V++GEVVTLLGRNGAGR Sbjct: 2 MSAVQSPSIGAVAQGTAGTVALSIENLQAWYGESHILHNVNLSVNKGEVVTLLGRNGAGR 61 Query: 61 TTTLRSIMGLVGTRKGSIKINGQETINLATHKIAHYGVGYCPEERGIFSSLSAEENLMLP 120 TTT+R+IMGL G RKGSIKI G ETI L T+KIAH+GVGYCPEERGIFSSLS EENL+LP Sbjct: 62 TTTMRAIMGLTGVRKGSIKIGGVETIGLPTYKIAHHGVGYCPEERGIFSSLSTEENLLLP 121 Query: 121 PFVSKTDKGMSIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEIS 180 P +S T+KGMS++EIY+MFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEIS Sbjct: 122 PSLSTTEKGMSVEEIYDMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEIS 181 Query: 181 EGLAPVIVQALARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLE 240 EGLAPVIVQ LARMITTLKAKGYTIVMVEQNF FAAPLADRFYVMEHGQIVESFASSQLE Sbjct: 182 EGLAPVIVQTLARMITTLKAKGYTIVMVEQNFCFAAPLADRFYVMEHGQIVESFASSQLE 241 Query: 241 AKMQTLNELLGV 252 KM LN LLGV Sbjct: 242 QKMPVLNALLGV 253 >ref|ZP_01914819.1| ABC transporter related protein [Limnobacter sp. MED105] gb|EDM84135.1| ABC transporter related protein [Limnobacter sp. MED105] Length = 235 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 195/231 (84%), Positives = 212/231 (91%) Query: 22 LQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKIN 81 L+I+ L +WYGESHILHN+NL V GEVVTLLGRNGAGRT+TLR+IMGL G RKGSIKIN Sbjct: 5 LEITGLNAWYGESHILHNLNLTVKTGEVVTLLGRNGAGRTSTLRAIMGLTGARKGSIKIN 64 Query: 82 GQETINLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMFPN 141 G E I + THKIAH GVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMS+ EIYEMFPN Sbjct: 65 GTEAIGMPTHKIAHLGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSVAEIYEMFPN 124 Query: 142 LKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLKAK 201 L ER+ SQGTRLSGGEQQMLAVARILRTGA+LLLLDEISEGLAPVIVQALA+MITTLK+K Sbjct: 125 LAERKKSQGTRLSGGEQQMLAVARILRTGAKLLLLDEISEGLAPVIVQALAKMITTLKSK 184 Query: 202 GYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 252 GYTIVMVEQNFRFAAPLADRFYV+EHGQIVE+FASS+L+ KM L+ LLGV Sbjct: 185 GYTIVMVEQNFRFAAPLADRFYVVEHGQIVEAFASSELDEKMPVLHSLLGV 235 >ref|YP_297572.1| ABC transporter related [Ralstonia eutropha JMP134] gb|AAZ62728.1| amino acid/amide ABC transporter ATP-binding protein 2, HAAT family [Ralstonia eutropha JMP134] Length = 241 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 195/244 (79%), Positives = 210/244 (86%), Gaps = 5/244 (2%) Query: 11 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 70 MTTS+ A L+I DL +WYGESHILH V+L V++GEVVTLLGRNGAGRTTTLR+IMGL Sbjct: 1 MTTSNVPA---LEIKDLHAWYGESHILHGVDLTVNRGEVVTLLGRNGAGRTTTLRAIMGL 57 Query: 71 VGTRKGSIKINGQETINLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTD--K 128 G RKGSIK+NG ETI L THKIAHYG+GYCPEER IFSSLS EENLMLPP + D K Sbjct: 58 TGARKGSIKVNGHETIGLPTHKIAHYGIGYCPEERAIFSSLSCEENLMLPPVLKGADSSK 117 Query: 129 GMSIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIV 188 GMS EIY+MFPNLKERR SQGTRLSGGEQQMLAV RILRTGA LLLLDEISEGLAPVIV Sbjct: 118 GMSEAEIYDMFPNLKERRQSQGTRLSGGEQQMLAVGRILRTGANLLLLDEISEGLAPVIV 177 Query: 189 QALARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNE 248 QALARMI LK KGYT+VMVEQNFRFAAPLADRFYVMEHG IVE FA+S+L+AKM LNE Sbjct: 178 QALARMILMLKKKGYTVVMVEQNFRFAAPLADRFYVMEHGGIVERFAASELQAKMPVLNE 237 Query: 249 LLGV 252 LLGV Sbjct: 238 LLGV 241 >ref|YP_004680664.1| high-affinity branched-chain amino acid transport ATP-binding protein LivF [Cupriavidus necator N-1] ref|YP_004687385.1| high-affinity branched-chain amino acid transport ATP-binding protein LivF [Cupriavidus necator N-1] gb|AEI78904.1| high-affinity branched-chain amino acid transport ATP-binding protein LivF [Cupriavidus necator N-1] gb|AEI79432.1| high-affinity branched-chain amino acid transport ATP-binding protein LivF [Cupriavidus necator N-1] Length = 241 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 194/244 (79%), Positives = 214/244 (87%), Gaps = 5/244 (2%) Query: 11 MTTSSSSAPLVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGL 70 MTTS++ A L+I DL +WYGESHILH V+L V++GEVVTLLGRNGAGRTTTLR+IMGL Sbjct: 1 MTTSNTPA---LEIRDLHAWYGESHILHGVDLTVNRGEVVTLLGRNGAGRTTTLRAIMGL 57 Query: 71 VGTRKGSIKINGQETINLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFV--SKTDK 128 GTRKGSIK+NG ETI+L THKIAHYG+GYCPEER IFSSLS EENLMLPP + + T K Sbjct: 58 TGTRKGSIKVNGHETISLPTHKIAHYGIGYCPEERAIFSSLSCEENLMLPPVLKGADTSK 117 Query: 129 GMSIDEIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIV 188 GMS +IYEMFPNLKERR SQGTRLSGGEQQMLAV RILRTGA LLLLDEISEGLAPVIV Sbjct: 118 GMSETDIYEMFPNLKERRQSQGTRLSGGEQQMLAVGRILRTGANLLLLDEISEGLAPVIV 177 Query: 189 QALARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNE 248 QALARMI LK KGYT+VMVEQNFRFAAPLADRFYVMEHG IVE FA+++L+AKM L+E Sbjct: 178 QALARMILMLKQKGYTVVMVEQNFRFAAPLADRFYVMEHGSIVERFAANELQAKMPVLHE 237 Query: 249 LLGV 252 LLGV Sbjct: 238 LLGV 241