BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0035.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778166.1| choline dehydrogenase [Herbaspirillum serope... 1070 0.0 ref|YP_004755056.1| glucose-methanol-choline oxidoreductase [Col... 850 0.0 ref|ZP_08635286.1| glucose-methanol-choline oxidoreductase [Halo... 733 0.0 ref|YP_004687387.1| choline dehydrogenase BetA [Cupriavidus neca... 733 0.0 gb|EFV86570.1| glucose-methanol-choline oxidoreductase:FAD depen... 731 0.0 >ref|YP_003778166.1| choline dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ66258.1| choline dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 1070 bits (2766), Expect = 0.0, Method: Composition-based stats. Identities = 516/539 (95%), Positives = 525/539 (97%) Query: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRQTGKKVLLLEAGAKDDYIWIHIPVGYLYCINNP 60 MQSAGQYDYIIIGAGTAGCVMANRLSR+TGKKVLL+EAGAKDDYIWIHIPVGYLYCINNP Sbjct: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGKKVLLIEAGAKDDYIWIHIPVGYLYCINNP 60 Query: 61 RTDWMFRTEADPGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVTGDDSWRW 120 RTDWMFRTEAD GLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWA+VTGDDSWRW Sbjct: 61 RTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWADVTGDDSWRW 120 Query: 121 QNVLPLFKKSEDYHLGASQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG 180 QNVLPLFKKSEDYHLGA QFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG Sbjct: 121 QNVLPLFKKSEDYHLGAGQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG 180 Query: 181 DNEGSGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVE 240 DNEG GYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVE Sbjct: 181 DNEGCGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVE 240 Query: 241 FTGGGSAWFAEAKETILCAGAIGSPHILQMSGIADPVLLQQHQIPVVHALPGVGENLQDH 300 FTGGGSAWFAEAKETILCAGAIGSPHILQMSGIADP LLQQHQIPVVHALPGVGENLQDH Sbjct: 241 FTGGGSAWFAEAKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQDH 300 Query: 301 LQMRMVFKVDGARTLNAMASTLVGKMKIGLEYLLLQSGPMSMAPSQLGAFARSDAQQASA 360 LQMRMVFKV+GA+TLNAMASTLVGKM+IGL+YL QSGPMSMAPSQLGAFA+SDAQQASA Sbjct: 301 LQMRMVFKVNGAKTLNAMASTLVGKMQIGLQYLFTQSGPMSMAPSQLGAFAKSDAQQASA 360 Query: 361 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLGSTDHALAPRITTNYLSTE 420 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRL S DHALAPRITTNYLSTE Sbjct: 361 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLASGDHALAPRITTNYLSTE 420 Query: 421 EDLKVAANALRLTRRIAASPALSRYRPEEYKPGTQYESEADLYRAAGEVGTTIFHPVGTC 480 EDLKVAANALRLTRRIAASPALSRYRPEEYKPG YE+E DLYRAAGEVGTTIFHPVGTC Sbjct: 421 EDLKVAANALRLTRRIAASPALSRYRPEEYKPGAHYETEEDLYRAAGEVGTTIFHPVGTC 480 Query: 481 RMGRDDDAMAVVDAQCRVRGVSGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 RMGR DDAMAVVDAQ RVRGV GLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA Sbjct: 481 RMGRSDDAMAVVDAQGRVRGVGGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 >ref|YP_004755056.1| glucose-methanol-choline oxidoreductase [Collimonas fungivorans Ter331] gb|AEK64233.1| glucose-methanol-choline oxidoreductase [Collimonas fungivorans Ter331] Length = 556 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 409/537 (76%), Positives = 464/537 (86%), Gaps = 5/537 (0%) Query: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRQTGKKVLLLEAGAKDDYIWIHIPVGYLYCINNP 60 M+SAG+YDYIIIGAGTAGCV+ANRL++ + KVLL+EAGAKDDYIWIHIPVGYLYCINNP Sbjct: 11 MESAGKYDYIIIGAGTAGCVLANRLTQDSSVKVLLIEAGAKDDYIWIHIPVGYLYCINNP 70 Query: 61 RTDWMFRTEADPGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVTGDDSWRW 120 RTDWM+RTE D GLNGRSLIYPRGKVLGG SSINGMIYMRGQARDYD WA++TGD +WRW Sbjct: 71 RTDWMYRTEPDAGLNGRSLIYPRGKVLGGSSSINGMIYMRGQARDYDQWAQLTGDPAWRW 130 Query: 121 QNVLPLFKKSEDYHLGASQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCG 180 + VLPLFKKSED++ GA +FHGAGGEWRVEKQRL W ILDAFRDAAAE GIPKV+DFN G Sbjct: 131 EQVLPLFKKSEDHYNGADEFHGAGGEWRVEKQRLSWKILDAFRDAAAEVGIPKVDDFNRG 190 Query: 181 DNEGSGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGE----QGPVC 236 DNEG YFDVNQKRG+RWNA+KAFLR A GNLTIMTG V RL +E+ E QG VC Sbjct: 191 DNEGCSYFDVNQKRGIRWNAAKAFLRSASGRGNLTIMTGCQVKRLLLERSEEDQRQGLVC 250 Query: 237 TGVEFTGGGSAWFAEA-KETILCAGAIGSPHILQMSGIADPVLLQQHQIPVVHALPGVGE 295 GVEF+GGG W AEA +ET+L AGA+GSPHILQ+SGI LLQQHQIPV+ PGVGE Sbjct: 251 KGVEFSGGGKEWRAEASRETLLSAGAVGSPHILQLSGIGPAALLQQHQIPVMQDTPGVGE 310 Query: 296 NLQDHLQMRMVFKVDGARTLNAMASTLVGKMKIGLEYLLLQSGPMSMAPSQLGAFARSDA 355 NLQDHLQ+RM FKV+G +TLNAM+S+ +GK +IGLEYLL+QSGPMSMAPSQLGAFA+SDA Sbjct: 311 NLQDHLQIRMAFKVNGVKTLNAMSSSWLGKARIGLEYLLMQSGPMSMAPSQLGAFAKSDA 370 Query: 356 QQASANLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLGSTDHALAPRITTN 415 QA+ANL+YHVQPLSLEKFGDPLHAFPAFTASVCNLRP+SRGHV++ S AP+IT N Sbjct: 371 GQATANLEYHVQPLSLEKFGDPLHAFPAFTASVCNLRPSSRGHVQIASGLAEGAPKITLN 430 Query: 416 YLSTEEDLKVAANALRLTRRIAASPALSRYRPEEYKPGTQYESEADLYRAAGEVGTTIFH 475 YL TEED KVAA +L LTRRIAA+PAL +Y PEE+KPG QY +E +L +AAGE+GTTIFH Sbjct: 431 YLDTEEDRKVAAASLLLTRRIAAAPALRKYAPEEFKPGPQYRTEEELIKAAGEIGTTIFH 490 Query: 476 PVGTCRMGRDDDAMAVVDAQCRVRGVSGLSVADASVMPSITSGNTNSPTVMIAEKVA 532 PVGTC+MGR DD MAVVD+Q RV+GV+GL V DASVMP+ITSGNTNSPT+MIAE A Sbjct: 491 PVGTCKMGRGDDPMAVVDSQLRVKGVAGLRVVDASVMPTITSGNTNSPTLMIAEMAA 547 >ref|ZP_08635286.1| glucose-methanol-choline oxidoreductase [Halomonas sp. TD01] gb|EGP21509.1| glucose-methanol-choline oxidoreductase [Halomonas sp. TD01] Length = 555 Score = 733 bits (1893), Expect = 0.0, Method: Composition-based stats. Identities = 350/541 (64%), Positives = 417/541 (77%), Gaps = 10/541 (1%) Query: 7 YDYIIIGAGTAGCVMANRLSRQTGKKVLLLEAGAKDDYIWIHIPVGYLYCINNPRTDWMF 66 +DYI+IGAGTAGC+MANRLS KVLL+EAG D+Y WIHIPVGYLYCINNPRTDW+F Sbjct: 9 FDYIVIGAGTAGCLMANRLSANPNNKVLLIEAGGPDNYHWIHIPVGYLYCINNPRTDWLF 68 Query: 67 RTEADPGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVTGDDSWRWQNVLPL 126 RTE D GLNGRSLIYPRGK LGGCSSINGM+Y+RGQARDYDHWAE+TGDD+WRW N LP Sbjct: 69 RTEPDKGLNGRSLIYPRGKTLGGCSSINGMLYLRGQARDYDHWAELTGDDAWRWDNCLPD 128 Query: 127 FKKSEDYH---------LGASQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDF 177 F K ED+H ++HG GGEWR+EKQRL W +LD F +AA + GIP+ +DF Sbjct: 129 FMKHEDHHRLDEGGDGDAEHRRYHGHGGEWRIEKQRLSWQVLDDFAEAAVQAGIPRTDDF 188 Query: 178 NCGDNEGSGYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCT 237 N GDNEG YF+VNQ++G RWN SKAFLRP + NLT+ +HV+RL EQ E P C Sbjct: 189 NRGDNEGVNYFEVNQRKGWRWNTSKAFLRPIKERSNLTLWHSTHVNRLLFEQQEGKPRCV 248 Query: 238 GVEFTGGGSAWFAEA-KETILCAGAIGSPHILQMSGIADPVLLQQHQIPVVHALPGVGEN 296 G E G A KE +L AGAIGSP ILQ+SGI LL++H I +V LPGVGEN Sbjct: 249 GAELLREGKTLSVGANKEVVLSAGAIGSPQILQLSGIGPAELLERHGIELVAVLPGVGEN 308 Query: 297 LQDHLQMRMVFKVDGARTLNAMASTLVGKMKIGLEYLLLQSGPMSMAPSQLGAFARSDAQ 356 LQDHLQ+R V+KV GA+TLN MASTL+GK KIGLEY+L +SGPMSMAPSQL F RS + Sbjct: 309 LQDHLQIRSVYKVKGAKTLNTMASTLLGKAKIGLEYVLKRSGPMSMAPSQLCIFTRSSDE 368 Query: 357 QASANLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLGSTDHALAPRITTNY 416 AN++YHVQPLSL+ FG PLH FPA TASVCNL PTSRG VR+ + D AP I NY Sbjct: 369 YQHANIEYHVQPLSLDAFGQPLHGFPAITASVCNLNPTSRGSVRIKNRDPQTAPAIEPNY 428 Query: 417 LSTEEDLKVAANALRLTRRIAASPALSRYRPEEYKPGTQYESEADLYRAAGEVGTTIFHP 476 LSTEED KVAA++LR+TRRIA A ++Y+PEE+KPG +Y+S+ DL + AG++GTTIFHP Sbjct: 429 LSTEEDRKVAADSLRVTRRIAEQQAFAKYQPEEFKPGLEYQSDDDLAKLAGDIGTTIFHP 488 Query: 477 VGTCRMGRDDDAMAVVDAQCRVRGVSGLSVADASVMPSITSGNTNSPTVMIAEKVASSLL 536 VGT +MG DDD MAVVD++ RV+GV+GL V DAS+MP+ITSGNTNSPT+MIAEK A ++ Sbjct: 489 VGTTKMGHDDDPMAVVDSKLRVKGVTGLRVVDASIMPTITSGNTNSPTLMIAEKAAGWMM 548 Query: 537 S 537 + Sbjct: 549 A 549 >ref|YP_004687387.1| choline dehydrogenase BetA [Cupriavidus necator N-1] gb|AEI78906.1| choline dehydrogenase BetA [Cupriavidus necator N-1] Length = 561 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 361/531 (67%), Positives = 420/531 (79%), Gaps = 6/531 (1%) Query: 7 YDYIIIGAGTAGCVMANRLSRQTGKKVLLLEAGAKDDYIWIHIPVGYLYCINNPRTDWMF 66 +DYII+GAG+AGCV+ANRL++ VLLLEAG KDDY WIHIPVGYLYCI NPRTDW++ Sbjct: 10 FDYIIVGAGSAGCVLANRLTQDADVNVLLLEAGGKDDYHWIHIPVGYLYCIGNPRTDWLY 69 Query: 67 RTEADPGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVTGDDSWRWQNVLPL 126 RTEA+ GLNGRSL YPRG+VLGGCSSINGMIYMRGQ DYD WA +TGDD WRW NVLPL Sbjct: 70 RTEAEAGLNGRSLGYPRGRVLGGCSSINGMIYMRGQREDYDAWARLTGDDGWRWDNVLPL 129 Query: 127 FKKSEDYHLGASQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCGDNEGSG 186 FK+SED+H G S+FHGAGGEWRVE QRLRWDIL+ F DAA E GIP+ EDFN GDN G G Sbjct: 130 FKRSEDHHRGPSEFHGAGGEWRVEGQRLRWDILERFADAAEEAGIPRTEDFNRGDNFGVG 189 Query: 187 YFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVEFTGGGS 246 YF+VNQ+RG+RWN +KAFLR A + NLTI+TG+ VS L + G CTGV + GGG Sbjct: 190 YFEVNQRRGIRWNTAKAFLRRASERPNLTIVTGAQVSGLTFD----GRRCTGVNYIGGGR 245 Query: 247 AWFAEAK-ETILCAGAIGSPHILQMSGIADPVLLQQHQIPVVHALPGVGENLQDHLQMRM 305 A A A+ E IL AGA+ +P +L++SGI LQ IPV HALPGVGENLQDHLQ+R Sbjct: 246 AQTAVARQEVILAAGAVNTPQLLELSGIGQAERLQALGIPVRHALPGVGENLQDHLQLRS 305 Query: 306 VFKVDGARTLNAMASTLVGKMKIGLEYLLLQSGPMSMAPSQLGAFARSDAQQASANLQYH 365 V KV G RTLN A++L GK IG++Y QSGPMSMAPSQLGAFARSD QA N++YH Sbjct: 306 VVKVSGVRTLNTRAASLWGKFCIGVQYAFNQSGPMSMAPSQLGAFARSDLAQARPNVEYH 365 Query: 366 VQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLGSTDHALAPRITTNYLSTEEDLKV 425 VQPLSL+KFGDPLHAF AFTAS CNLRPTSRG V +GS D AP I NYL+T+ED KV Sbjct: 366 VQPLSLDKFGDPLHAFNAFTASACNLRPTSRGSVHIGSADFRQAPVIAPNYLATDEDRKV 425 Query: 426 AANALRLTRRIAASPALSRYRPEEYKPGTQYESEADLYRAAGEVGTTIFHPVGTCRMGRD 485 AA+++RLTRRI ASPAL+ Y+PEE+ PG ++++ L AAG +GTTIFHPVGTC+MGR Sbjct: 426 AADSIRLTRRIVASPALAPYQPEEWLPGPAFQTDEQLAEAAGNIGTTIFHPVGTCKMGRA 485 Query: 486 DDAMAVVDAQCRVRGVSGLSVADASVMPSITSGNTNSPTVMIAEKVASSLL 536 DD MAVVD + RV G+ GL V DASVMP ITSGNTNSPT+MIAE+ AS L+ Sbjct: 486 DDPMAVVDHRLRVLGIDGLRVVDASVMPLITSGNTNSPTIMIAER-ASDLI 535 >gb|EFV86570.1| glucose-methanol-choline oxidoreductase:FAD dependent oxidoreductase:GMC oxidoreductase [Achromobacter xylosoxidans C54] Length = 547 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 357/534 (66%), Positives = 420/534 (78%), Gaps = 5/534 (0%) Query: 7 YDYIIIGAGTAGCVMANRLSRQTGKKVLLLEAGAKDDYIWIHIPVGYLYCINNPRTDWMF 66 YDYII+GAG+AGCV+ANRLSR +VLLLEAG +D+Y WIHIPVGYLYCI NPRTDWM+ Sbjct: 4 YDYIIVGAGSAGCVLANRLSRDPTVRVLLLEAGGRDNYHWIHIPVGYLYCIGNPRTDWMY 63 Query: 67 RTEADPGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVTGDDSWRWQNVLPL 126 RT A+PGL GRSLIYPRG+VLGGCSSINGMIYMRGQ +DYD WAE+ GD SWRW VLP+ Sbjct: 64 RTGAEPGLGGRSLIYPRGRVLGGCSSINGMIYMRGQRQDYDQWAEIAGDPSWRWDQVLPV 123 Query: 127 FKKSEDYHLGASQFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIPKVEDFNCGDNEGSG 186 FK+SED+H GA +FHGAGGEWRVE QRLRWDILDAF AA + GIP+V DFN GDN G G Sbjct: 124 FKRSEDHHRGADEFHGAGGEWRVEAQRLRWDILDAFASAAEQEGIPRVADFNRGDNFGVG 183 Query: 187 YFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEQGPVCTGVEFT-GGG 245 YFDVNQ+RG RWN +KAFLRP + NL +MTG+H RL E G C GV+ G Sbjct: 184 YFDVNQRRGWRWNTAKAFLRPVRERANLQVMTGAHAERLLFE----GTRCVGVQVRRDGQ 239 Query: 246 SAWFAEAKETILCAGAIGSPHILQMSGIADPVLLQQHQIPVVHALPGVGENLQDHLQMRM 305 SA A+E +L AGA+ +P +L++SGI +P L++ I + HALPGVGENLQDHLQ+R+ Sbjct: 240 SASVRAAREVVLAAGAVNTPQLLELSGIGEPARLRESGIALHHALPGVGENLQDHLQLRV 299 Query: 306 VFKVDGARTLNAMASTLVGKMKIGLEYLLLQSGPMSMAPSQLGAFARSDAQQASANLQYH 365 + KV G +TLN +AST GK IGLEYLL +SGPMSMAPSQLGAFA+SD QA ANL++H Sbjct: 300 ILKVRGVKTLNRIASTWWGKAGIGLEYLLNRSGPMSMAPSQLGAFAKSDPGQARANLEFH 359 Query: 366 VQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLGSTDHALAPRITTNYLSTEEDLKV 425 VQPLSL FG+PLH F AFTASVCNLRP SRG V D +L P IT NYL E+DLKV Sbjct: 360 VQPLSLGAFGEPLHGFDAFTASVCNLRPVSRGSVHAQGADGSLPPVITPNYLKEEQDLKV 419 Query: 426 AANALRLTRRIAASPALSRYRPEEYKPGTQYESEADLYRAAGEVGTTIFHPVGTCRMGRD 485 AA+A+RL RRI+A+PAL RY+PEE+ PG Y+SEA+L AAG++GTTIFHPVGTC MGR Sbjct: 420 AADAIRLVRRISAAPALQRYQPEEWLPGPAYQSEAELREAAGKIGTTIFHPVGTCAMGRR 479 Query: 486 DDAMAVVDAQCRVRGVSGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 D AVVDA+ RV G+ GL VADAS+MP+ITSGNTNSPT+MIAE+ A +L A Sbjct: 480 ADDGAVVDARLRVHGLQGLRVADASIMPTITSGNTNSPTIMIAERAAQMILEDA 533